ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185143.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
3emb|CR658694.2|CNS0F77W Tetraodon nigroviridis full-length cDNA 40 5.1
4gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, com... 40 5.1
5gb|AF526207.1| Argopecten irradians isolate iolsaicl19ct37cn42 r... 40 5.1
6emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in ... 40 5.1
7gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 40 5.1
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
9gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, comp... 40 5.1
10gb|AC108719.3| Homo sapiens 3 BAC RP11-247J22 (Roswell Park Canc... 40 5.1
11gb|AC131008.4| Homo sapiens 3 BAC RP11-113N7 (Roswell Park Cance... 40 5.1
12gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genom... 40 5.1
13dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.1
14emb|AL442639.2|HS5P15 Homo sapiens chromosome 9 BAC RP11-5P15, c... 40 5.1
15emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in ... 40 5.1
16emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chr... 40 5.1

>ref|NM_185143.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 acatcttttgatctactgct 167
           ||||||||||||||||||||
Sbjct: 167 acatcttttgatctactgct 148



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 148      acatcttttgatctactgct 167
                ||||||||||||||||||||
Sbjct: 34346547 acatcttttgatctactgct 34346566



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 3        aaatgtggagctttatttgt 22
                ||||||||||||||||||||
Sbjct: 18444867 aaatgtggagctttatttgt 18444848



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>emb|CR658694.2|CNS0F77W Tetraodon nigroviridis full-length cDNA
          Length = 1048

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 agccaatgcaatatatgctg 362
           ||||||||||||||||||||
Sbjct: 254 agccaatgcaatatatgctg 273



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>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence
          Length = 175861

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 304    tgaaagcatcctccgaagccttcacttc 331
              ||||||||||||| || |||||||||||
Sbjct: 139624 tgaaagcatcctcagaggccttcacttc 139597



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>gb|AF526207.1| Argopecten irradians isolate iolsaicl19ct37cn42 ribosomal protein
           L4 mRNA, partial cds
          Length = 910

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 118 ggattaccagaaaaagaatgaagc 141
           ||||||||||||| ||||||||||
Sbjct: 667 ggattaccagaaatagaatgaagc 690



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>emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in linkage group 2, complete
              sequence
          Length = 233488

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    atgcaatatatgctgacagt 367
              ||||||||||||||||||||
Sbjct: 131765 atgcaatatatgctgacagt 131784



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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
              sequence
          Length = 115393

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    acatcttttgatctactgct 167
              ||||||||||||||||||||
Sbjct: 103147 acatcttttgatctactgct 103128



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 148      acatcttttgatctactgct 167
                ||||||||||||||||||||
Sbjct: 34437019 acatcttttgatctactgct 34437038



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 3        aaatgtggagctttatttgt 22
                ||||||||||||||||||||
Sbjct: 18438908 aaatgtggagctttatttgt 18438889



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>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence
          Length = 192347

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 304   tgaaagcatcctccgaagccttcacttc 331
             ||||||||||||| || |||||||||||
Sbjct: 30696 tgaaagcatcctcagaggccttcacttc 30669



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>gb|AC108719.3| Homo sapiens 3 BAC RP11-247J22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 43088

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   atgctcttgaaagcatcctc 316
             ||||||||||||||||||||
Sbjct: 42554 atgctcttgaaagcatcctc 42535



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>gb|AC131008.4| Homo sapiens 3 BAC RP11-113N7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 6835

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  atgctcttgaaagcatcctc 316
            ||||||||||||||||||||
Sbjct: 1470 atgctcttgaaagcatcctc 1451



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>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete
             sequence
          Length = 90673

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaatgtggagctttatttgt 22
             ||||||||||||||||||||
Sbjct: 36348 aaatgtggagctttatttgt 36367



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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 16      tatttgttgcagcatccaca 35
               ||||||||||||||||||||
Sbjct: 3189506 tatttgttgcagcatccaca 3189525



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>emb|AL442639.2|HS5P15 Homo sapiens chromosome 9 BAC RP11-5P15, complete sequence
          Length = 165299

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    catatctatttgctcctctc 231
              ||||||||||||||||||||
Sbjct: 106748 catatctatttgctcctctc 106767



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>emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in linkage group 20,
              complete sequence
          Length = 173570

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tgttgcagcatccacaacag 39
              ||||||||||||||||||||
Sbjct: 104095 tgttgcagcatccacaacag 104076



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>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete
              sequence
          Length = 196812

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     accaaaggtgcatctcggtt 77
              ||||||||||||||||||||
Sbjct: 158967 accaaaggtgcatctcggtt 158948


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,459,809
Number of Sequences: 3902068
Number of extensions: 3459809
Number of successful extensions: 59063
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58901
Number of HSP's gapped (non-prelim): 162
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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