Clone Name | rbastl45g05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0082M15.22), mRNA Length = 3246 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 3217 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3168
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 137342 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 137293
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 20927049 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20927098
>dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L07, full insert sequence Length = 3864 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 3659 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3610
>dbj|AK066542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069N05, full insert sequence Length = 2734 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 2564 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 2515
>dbj|AK062557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H02, full insert sequence Length = 2018 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 1673 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 1624
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 249 tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298 |||||||||| ||||||||||||||| ||||||||||||| | ||||||| Sbjct: 20938313 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20938362
>emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in linkage group 6, complete sequence Length = 190610 Score = 46.1 bits (23), Expect = 0.065 Identities = 23/23 (100%) Strand = Plus / Plus Query: 63 tagagggaaatgttagaaagaaa 85 ||||||||||||||||||||||| Sbjct: 47056 tagagggaaatgttagaaagaaa 47078
>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence Length = 190325 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tcatgggctcatagcaaagag 144 ||||||||||||||||||||| Sbjct: 119632 tcatgggctcatagcaaagag 119612
>emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in linkage group 25, complete sequence Length = 181165 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 agaaagaaactatgtttacaacaac 101 ||||||||||||||||| ||||||| Sbjct: 133438 agaaagaaactatgtttgcaacaac 133462
>emb|CR605890.1| full-length cDNA clone CS0DA012YP15 of Neuroblastoma of Homo sapiens (human) Length = 1941 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 agctgcagcaaggccttccag 253 ||||||||||||||||||||| Sbjct: 1896 agctgcagcaaggccttccag 1876
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 agctgcagcaaggccttccag 253 ||||||||||||||||||||| Sbjct: 43298 agctgcagcaaggccttccag 43318
>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region, complete sequence Length = 235395 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 agctgcagcaaggccttccag 253 ||||||||||||||||||||| Sbjct: 234827 agctgcagcaaggccttccag 234847
>gb|AF133300.2|AF133300 Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta3, and MOR 3'Beta4 genes, complete cds; Cbx3 pseudogene, complete sequence; and MOR 3'Beta5 and MOR 3'Beta6 genes, complete cds Length = 92000 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 tcatgggctcatagcaaagag 144 ||||||||||||||||||||| Sbjct: 7 tcatgggctcatagcaaagag 27
>emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, complete sequence Length = 175586 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 agaaagaaactatgtttacaacaac 101 ||||||||||||||||| ||||||| Sbjct: 171350 agaaagaaactatgtttgcaacaac 171374
>gb|AC013255.5| Drosophila melanogaster clone BACR27A22, complete sequence Length = 148414 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaaagaaactatgtttacaa 97 |||||||||||||||||||| Sbjct: 15140 gaaagaaactatgtttacaa 15159
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 gaaagaaactatgtttacaa 97 |||||||||||||||||||| Sbjct: 34994 gaaagaaactatgtttacaa 34975
>ref|XM_610880.2| PREDICTED: Bos taurus similar to ADAM metallopeptidase domain 21 preproprotein (LOC532366), mRNA Length = 2157 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 actatgtttacaacaacaaataca 108 |||||||| ||||||||||||||| Sbjct: 719 actatgttgacaacaacaaataca 696
>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete sequence Length = 189613 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 atgttagaaagaaactatgt 91 |||||||||||||||||||| Sbjct: 75553 atgttagaaagaaactatgt 75572
>gb|AC125201.4| Mus musculus BAC clone RP23-224O3 from 14, complete sequence Length = 189542 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 cgccctcaaaagccacgccc 302 |||||||||||||||||||| Sbjct: 125422 cgccctcaaaagccacgccc 125441
>gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosome 13, complete sequence Length = 190521 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaatgttagaaagaaactat 89 |||||||||||||||||||| Sbjct: 73636 aaatgttagaaagaaactat 73655
>gb|AE014176.1| Mus musculus piebald deletion region section 4 of 11 of the complete sequence Length = 395229 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 cgccctcaaaagccacgccc 302 |||||||||||||||||||| Sbjct: 209536 cgccctcaaaagccacgccc 209555
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 actatgtttacaacaacaaataca 108 ||||||||| |||||||||||||| Sbjct: 1191266 actatgttttcaacaacaaataca 1191289
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 tagaaagaaactatgtttacaaca 99 ||||||||||||||||||| |||| Sbjct: 352492 tagaaagaaactatgtttaaaaca 352515
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agggaaatgttagaaagaaa 85 |||||||||||||||||||| Sbjct: 3567612 agggaaatgttagaaagaaa 3567631
>ref|NM_001015470.1| Drosophila melanogaster CG40298-PA.3 (CG40298), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaaagaaactatgtttacaa 97 |||||||||||||||||||| Sbjct: 274 gaaagaaactatgtttacaa 293
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agggaaatgttagaaagaaa 85 |||||||||||||||||||| Sbjct: 135680 agggaaatgttagaaagaaa 135699
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 tagaaagaaactatgtttacaaca 99 ||||||||||||||||||| |||| Sbjct: 62445 tagaaagaaactatgtttaaaaca 62468
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaaagaaactatgtttacaa 97 |||||||||||||||||||| Sbjct: 386094 gaaagaaactatgtttacaa 386113
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 actatgtttacaacaacaaataca 108 ||||||||| |||||||||||||| Sbjct: 567125 actatgttttcaacaacaaataca 567148
>emb|CT030156.9| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete sequence Length = 189564 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aaatgttagaaagaaactat 89 |||||||||||||||||||| Sbjct: 86968 aaatgttagaaagaaactat 86949 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,381,825 Number of Sequences: 3902068 Number of extensions: 2381825 Number of successful extensions: 38545 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38467 Number of HSP's gapped (non-prelim): 78 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)