>RL34_TOBAC (P41098) 60S ribosomal protein L34|
          Length = 120

 Score = 72.0 bits (175), Expect = 3e-13
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           PTEYKRSRLSRNRRTVNR YGGVLSG+AVRERIIRAF
Sbjct: 59  PTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

>RL34_PEA (P40590) 60S ribosomal protein L34|
          Length = 120

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           PTEYKRSRLSRNRRTVNR YGGVLSG AVRERIIRAF
Sbjct: 59  PTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95

>RL34_ARATH (Q42351) 60S ribosomal protein L34|
          Length = 120

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P+EYKRSRLSRNRRTVNR YGGVLSG+AVRERIIRAF
Sbjct: 59  PSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

>RL34A_SCHPO (O42846) 60S ribosomal protein L34-A|
          Length = 112

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P E+  +RLS N++TV R YGG LS  AV++RI+RAF
Sbjct: 59  PREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93

>RL34B_SCHPO (Q9URT8) 60S ribosomal protein L34-B (60S ribosomal protein L34-2)|
          Length = 111

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P E+  +RLS N++ V R YGG LS  AV++RI+RAF
Sbjct: 59  PREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93

>RL34_ENCCU (Q8SSA2) 60S ribosomal protein L34|
          Length = 110

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P E+ R ++S  R  VNRPYG    G  VRE+II AF
Sbjct: 58  PAEFSRQKVSARR--VNRPYGATTCGRCVREKIISAF 92

>RL34_AEDTR (Q9NB34) 60S ribosomal protein L34|
          Length = 138

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 368 KRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           +R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct: 60  ERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 92

>RL34_AEDAL (P45842) 60S ribosomal protein L34 (L31)|
          Length = 129

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 368 KRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           +R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct: 60  ERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 92

>RL34A_YEAST (P87262) 60S ribosomal protein L34-A|
          Length = 121

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P +Y  + +S+  +TV+R YGG      V+ERIIRAF
Sbjct: 59  PRQY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93

>RL34B_YEAST (P40525) 60S ribosomal protein L34-B|
          Length = 121

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 380 PTEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           P +Y  + +S+  +TV+R YGG      V+ERI+RAF
Sbjct: 59  PRQY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAF 93

>RL34_ICTPU (Q90YT5) 60S ribosomal protein L34|
          Length = 116

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 359 RLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           RLS+ ++ V+R YGG +    VR+RI RAF
Sbjct: 65  RLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 94

>RL34_HUMAN (P49207) 60S ribosomal protein L34|
          Length = 116

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 359 RLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           RLS+ ++ V+R YGG +    VR+RI RAF
Sbjct: 65  RLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 94

>RL34_BRARE (Q7ZWJ7) 60S ribosomal protein L34|
          Length = 116

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 359 RLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           RLS+ ++ V+R YGG +    VR+RI RAF
Sbjct: 65  RLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 94

>RL34_MOUSE (Q9D1R9) 60S ribosomal protein L34|
          Length = 116

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 359 RLSRNRRTVNRPYGGVLSGTAVRERIIRAF 270
           RLS+ ++ V+R YGG +    VR+RI RAF
Sbjct: 65  RLSKTQKHVSRAYGGSMCAKCVRDRIKRAF 94

>RL34_AERPE (P58026) 50S ribosomal protein L34e|
          Length = 95

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 359 RLSRNRRTVNRPYGGVLSGTAVRERIIRA 273
           RLS+  +   RPYGGVL  T + E I  A
Sbjct: 62  RLSKTAKRPERPYGGVLCSTCLAEMIFEA 90

>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 109  TKPLIITTNKNIFLVYRIPSHFALPFQTDYFEVVLSL 219
            T PL +TT+K+  L YR PS  A P   D   + LSL
Sbjct: 2719 TSPLQLTTSKHTELQYRKPSSQAFPMIRDEAPINLSL 2755

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 109  TKPLIITTNKNIFLVYRIPSHFALPFQTDYFEVVLSL 219
            T PL +TT+K+  L YR PS  A P   D   + LSL
Sbjct: 2765 TSPLQLTTSKHTELPYRKPSSQAFPTIRDEAPINLSL 2801

>Y5743_VIBPA (Q87FD6) Protein VPA1743|
          Length = 300

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 243 EGVENTEDQ---GQDDLKVICLKRKCEVRWYSVNKENIFVGGYDQWFSPF*LNVLEYLKS 73
           + VEN ED    GQDDLK + L            K ++ VG      +P+ L  LEY KS
Sbjct: 110 KAVENAEDDVKMGQDDLKALHL-----------TKHDVVVGIAASGRTPYVLGGLEYAKS 158

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 109  TKPLIITTNKNIFLVYRIPSHFALPFQTDYFEVVLSL 219
            T PL +TT+K+    YRIPS    P   +   + LSL
Sbjct: 2752 TTPLQLTTSKHAEPPYRIPSDQVFPIAREEAPINLSL 2788

>RL34_METTH (O26137) 50S ribosomal protein L34e|
          Length = 88

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 371 YKRSRLSRNRRTVNRPYGGVLSGTAVRE 288
           Y+  +LS++++  NRPYGG    +  R+
Sbjct: 53  YEIRKLSKSKKRPNRPYGGYYCSSCARK 80

>RNZ_BACTN (Q89ZN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 316

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 71  SAAVTSEIVKHLIPICNFIFE 9
           S AVT+  ++H IP C F+FE
Sbjct: 133 SVAVTTIPLRHRIPCCGFLFE 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,733,506
Number of Sequences: 219361
Number of extensions: 749821
Number of successful extensions: 1743
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)