Clone Name | rbastl02a10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosome 8, complete sequence Length = 191336 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 344 cctctgtttgtgccctggctattctg 369 ||||||||| |||||||||||||||| Sbjct: 32847 cctctgtttttgccctggctattctg 32872
>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence Length = 188068 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 344 cctctgtttgtgccctggctattctg 369 ||||||||| |||||||||||||||| Sbjct: 187405 cctctgtttttgccctggctattctg 187430
>emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in linkage group 9, complete sequence Length = 253450 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 acatacattactatcaaacaa 29 ||||||||||||||||||||| Sbjct: 24245 acatacattactatcaaacaa 24225
>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10, complete sequence Length = 127879 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 acaacaacaaatgcatctact 46 ||||||||||||||||||||| Sbjct: 79081 acaacaacaaatgcatctact 79101
>gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, complete sequence Length = 141824 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 catgcttctttgcctctgttt 352 ||||||||||||||||||||| Sbjct: 117727 catgcttctttgcctctgttt 117707
>emb|BX324119.5| Zebrafish DNA sequence from clone DKEYP-114G10 in linkage group 7, complete sequence Length = 60037 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atacattactatcaaacaaca 31 ||||||||||||||||||||| Sbjct: 40935 atacattactatcaaacaaca 40915
>gb|AC118556.2| Homo sapiens chromosome 1 clone RP11-421I6, complete sequence Length = 9890 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 catgcttctttgcctctgttt 352 ||||||||||||||||||||| Sbjct: 9764 catgcttctttgcctctgttt 9784
>gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, complete sequence Length = 159838 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 catgcttctttgcctctgttt 352 ||||||||||||||||||||| Sbjct: 159100 catgcttctttgcctctgttt 159080
>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10, complete sequence Length = 189446 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 acaacaacaaatgcatctact 46 ||||||||||||||||||||| Sbjct: 168186 acaacaacaaatgcatctact 168166
>gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target subunit 2 (MYPT2) gene, exons 11 through 24, and complete cds Length = 150000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 catgcttctttgcctctgttt 352 ||||||||||||||||||||| Sbjct: 149633 catgcttctttgcctctgttt 149613
>gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y, complete sequence Length = 171834 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 catgcttctttgcctctgttt 352 ||||||||||||||||||||| Sbjct: 132625 catgcttctttgcctctgttt 132605
>emb|BX004815.6| Zebrafish DNA sequence from clone CH211-31O18 in linkage group 9, complete sequence Length = 172899 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 acatacattactatcaaacaa 29 ||||||||||||||||||||| Sbjct: 100209 acatacattactatcaaacaa 100189
>gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, complete sequence Length = 184959 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 tgcttctttgcctctgtttgt 354 ||||||||||||||||||||| Sbjct: 45874 tgcttctttgcctctgtttgt 45894
>gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, complete sequence Length = 172121 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gtttttgtctaatacatgaa 256 |||||||||||||||||||| Sbjct: 71163 gtttttgtctaatacatgaa 71144
>gb|DQ165379.1| Dendroctonus rufipennis microsatellite 54 sequence Length = 170 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cttctttgcctctgtttgtg 355 |||||||||||||||||||| Sbjct: 43 cttctttgcctctgtttgtg 24
>gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosome 17, complete sequence Length = 168712 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tactatcaaacaacaacaaa 36 |||||||||||||||||||| Sbjct: 113956 tactatcaaacaacaacaaa 113937
>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence Length = 122251 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacacatacattactatcaaaca 28 ||||||||||| |||||||||||| Sbjct: 77944 caacacatacactactatcaaaca 77921
>gb|AC162295.3| Mus musculus chromosome 1, clone RP24-232K22, complete sequence Length = 180957 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtttttgtctaatacatgaa 256 |||||||||||||||||||| Sbjct: 22892 gtttttgtctaatacatgaa 22911
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tttcaaaagggaacaactat 88 |||||||||||||||||||| Sbjct: 30963 tttcaaaagggaacaactat 30982
>emb|BX649638.19| Zebrafish DNA sequence from clone CH211-64M24 in linkage group 18, complete sequence Length = 185541 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catacattactatcaaacaa 29 |||||||||||||||||||| Sbjct: 4193 catacattactatcaaacaa 4174
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 acatgttcagacttagcatg 68 |||||||||||||||||||| Sbjct: 7797703 acatgttcagacttagcatg 7797684
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 acatgttcagacttagcatg 68 |||||||||||||||||||| Sbjct: 44906 acatgttcagacttagcatg 44887
>emb|AL672080.11| Zebrafish DNA sequence from clone BUSM1-202M12 in linkage group 18, complete sequence Length = 46517 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catacattactatcaaacaa 29 |||||||||||||||||||| Sbjct: 7051 catacattactatcaaacaa 7032
>emb|X90580.1|SCNUP188 S.cerevisiae DNA for Nup188 gene Length = 5516 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ttactatcaaacaacaacaa 35 |||||||||||||||||||| Sbjct: 1794 ttactatcaaacaacaacaa 1813
>emb|CR385027.12| Zebrafish DNA sequence from clone DKEY-13A17 in linkage group 9, complete sequence Length = 228454 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ctgatatgcaaatccagcag 294 |||||||||||||||||||| Sbjct: 14466 ctgatatgcaaatccagcag 14485
>emb|X80835.1|SC9514 S.cerevisiae chromosome XIII cosmid 9514 Length = 13841 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ttactatcaaacaacaacaa 35 |||||||||||||||||||| Sbjct: 5671 ttactatcaaacaacaacaa 5652
>gb|U47107.1|SCU47107 Saccharomyces cerevisiae major nucleoporin (NUP188) gene, complete cds Length = 5839 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ttactatcaaacaacaacaa 35 |||||||||||||||||||| Sbjct: 2108 ttactatcaaacaacaacaa 2127 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,354,223 Number of Sequences: 3902068 Number of extensions: 4354223 Number of successful extensions: 83373 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83309 Number of HSP's gapped (non-prelim): 64 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)