Clone Name | rbart53f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736 Query: 377 tgcgatg 383 |||||| Sbjct: 735 cgcgatg 729
>ref|XM_507487.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1235 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739 Query: 377 tgcgatg 383 |||||| Sbjct: 738 cgcgatg 732
>ref|XM_506829.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1267 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 1007 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 948 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 947 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 888 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 887 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 828 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 827 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 768 Query: 377 tgcgatg 383 |||||| Sbjct: 767 cgcgatg 761
>gb|AY224558.1| Oryza sativa (japonica cultivar-group) isolate 29037 gamma hydroxybutyrate dehydrogenase-like protein mRNA, complete cds Length = 882 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 873 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 814 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 813 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 754 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 753 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 694 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 693 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 634 Query: 377 tgcgatg 383 |||||| Sbjct: 633 cgcgatg 627
>dbj|AB110167.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 12FPR024 Length = 1163 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 956 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 897 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 896 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 837 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 836 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 777 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 776 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 717 Query: 377 tgcgatg 383 |||||| Sbjct: 716 cgcgatg 710
>dbj|AK109435.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H04, full insert sequence Length = 1220 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 1004 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 945 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 944 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 885 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 884 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 825 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 824 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 765 Query: 377 tgcgatg 383 |||||| Sbjct: 764 cgcgatg 758
>dbj|AK104168.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E09, full insert sequence Length = 1187 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736 Query: 377 tgcgatg 383 |||||| Sbjct: 735 cgcgatg 729
>dbj|AK071800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114G06, full insert sequence Length = 1235 Score = 178 bits (90), Expect = 9e-42 Identities = 206/247 (83%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859 Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799 Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739 Query: 377 tgcgatg 383 |||||| Sbjct: 738 cgcgatg 732
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Minus Query: 233 agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 292 ||||||||| |||||||||||||| || || || ||||| | | || |||| |||||| Sbjct: 21367508 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 21367449 Query: 293 atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 352 |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| || Sbjct: 21367448 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 21367389 Query: 353 ccctttcatcttgaacatcggatttgcgatg 383 |||||||| ||||||||| ||||| |||||| Sbjct: 21367388 ccctttcagcttgaacattggattcgcgatg 21367358 Score = 63.9 bits (32), Expect = 4e-07 Identities = 73/89 (82%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 21367703 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 21367644 Query: 197 tcccaagcttcttgctttcttgaatgcct 225 |||||||||||||||||||||||| |||| Sbjct: 21367643 tcccaagcttcttgctttcttgaacgcct 21367615
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Minus Query: 233 agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 292 ||||||||| |||||||||||||| || || || ||||| | | || |||| |||||| Sbjct: 27461 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 27402 Query: 293 atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 352 |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| || Sbjct: 27401 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 27342 Query: 353 ccctttcatcttgaacatcggatttgcgatg 383 |||||||| ||||||||| ||||| |||||| Sbjct: 27341 ccctttcagcttgaacattggattcgcgatg 27311 Score = 63.9 bits (32), Expect = 4e-07 Identities = 73/89 (82%) Strand = Plus / Minus Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196 |||||| ||||||| ||| ||||| ||||||| ||||| |||||||| || || Sbjct: 27656 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 27597 Query: 197 tcccaagcttcttgctttcttgaatgcct 225 |||||||||||||||||||||||| |||| Sbjct: 27596 tcccaagcttcttgctttcttgaacgcct 27568
>gb|BT012834.1| Lycopersicon esculentum clone 113891R, mRNA sequence Length = 1105 Score = 113 bits (57), Expect = 4e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 198 cccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagacg 257 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| | || Sbjct: 845 cccaagctccttgccttcttgaatgcctcatttgcagcagctgcaactggcattggcact 786 Query: 258 gcattttcatctcccaatgacagagccagcctcatatccttctgctgatgttt 310 ||||| |||||||| | || |||||||||||||| ||||||||||||||||| Sbjct: 785 gcattctcatctccgagtgcaagagccagcctcatgtccttctgctgatgttt 733
>ref|NM_001035688.1| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) AT3G25530 transcript variant AT3G25530.2 mRNA, complete cds Length = 1065 Score = 61.9 bits (31), Expect = 1e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 861 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 802 Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 801 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 742 Query: 315 ggaaatgctgg 325 ||||||||||| Sbjct: 741 ggaaatgctgg 731
>ref|NM_113449.2| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) AT3G25530 transcript variant AT3G25530.1 mRNA, complete cds Length = 1099 Score = 61.9 bits (31), Expect = 1e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836 Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776 Query: 315 ggaaatgctgg 325 ||||||||||| Sbjct: 775 ggaaatgctgg 765
>gb|AY044183.1| Arabidopsis thaliana gamma hydroxybutyrate dehydrogenase mRNA, complete cds Length = 1032 Score = 61.9 bits (31), Expect = 1e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756 Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696 Query: 315 ggaaatgctgg 325 ||||||||||| Sbjct: 695 ggaaatgctgg 685
>gb|BT025039.1| Arabidopsis thaliana At3g25530 mRNA, complete cds Length = 870 Score = 61.9 bits (31), Expect = 1e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756 Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696 Query: 315 ggaaatgctgg 325 ||||||||||| Sbjct: 695 ggaaatgctgg 685
>gb|AY049298.1| Arabidopsis thaliana AT3g25530/MWL2_15 mRNA, complete cds Length = 1081 Score = 61.9 bits (31), Expect = 1e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836 Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776 Query: 315 ggaaatgctgg 325 ||||||||||| Sbjct: 775 ggaaatgctgg 765
>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete sequence Length = 126437 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 295 ccttctgctgatgtttgaggggaaatgc 322 |||||||||||||||| ||||||||||| Sbjct: 79217 ccttctgctgatgttttaggggaaatgc 79244
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence Length = 38975 Score = 46.1 bits (23), Expect = 0.083 Identities = 44/51 (86%) Strand = Plus / Minus Query: 282 gccagcctcatatccttctgctgatgtttgaggggaaatgctggattgtag 332 ||||||| ||||||||||||||| || ||||| || ||||| || |||||| Sbjct: 22730 gccagccgcatatccttctgctggtgcttgagcgggaatgcggggttgtag 22680
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 46.1 bits (23), Expect = 0.083 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 agagccagcctcatatccttctgctgatgtttgaggggaaatgctgg 325 ||||| |||||||| || |||||||||||||| | ||||||||||| Sbjct: 58963 agagctagcctcatgtctttctgctgatgtttcaatggaaatgctgg 59009
>ref|NM_101628.3| Arabidopsis thaliana phosphogluconate dehydrogenase (decarboxylating) AT1G17650 mRNA, complete cds Length = 1242 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctcatatccttctgctgatg 307 |||||||||||||||||||| Sbjct: 968 ctcatatccttctgctgatg 949
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccagcctcatatccttctg 301 |||||||||||||||||||| Sbjct: 841246 gccagcctcatatccttctg 841265
>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence Length = 208928 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccagcctcatatccttctg 301 |||||||||||||||||||| Sbjct: 142687 gccagcctcatatccttctg 142706
>gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complete sequence Length = 99596 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccagcctcatatccttctg 301 |||||||||||||||||||| Sbjct: 39555 gccagcctcatatccttctg 39574
>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence Length = 179728 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 catatccttctgctgatgtt 309 |||||||||||||||||||| Sbjct: 81155 catatccttctgctgatgtt 81174
>gb|BT008734.1| Arabidopsis thaliana At1g17650 gene, complete cds Length = 1032 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctcatatccttctgctgatg 307 |||||||||||||||||||| Sbjct: 875 ctcatatccttctgctgatg 856
>gb|AY093135.1| Arabidopsis thaliana unknown protein (At1g17650) mRNA, complete cds Length = 1164 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctcatatccttctgctgatg 307 |||||||||||||||||||| Sbjct: 891 ctcatatccttctgctgatg 872
>dbj|AK136847.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330129O16 product:hypothetical protein, full insert sequence Length = 2624 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ctttcatcttgaacatcggatttg 378 ||||||||||||||||| |||||| Sbjct: 738 ctttcatcttgaacatctgatttg 761
>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence Length = 175834 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 ccaagtcccaagcttcttgctttc 215 |||||||||||| ||||||||||| Sbjct: 41834 ccaagtcccaagtttcttgctttc 41857
>gb|AF516609.1| Malus x domestica putative disease resistance gene analog NBS-LRR (FRGA-A3) gene, partial cds Length = 519 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 68 aagcttcttgctttcttgaa 87
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccagcctcatatccttctg 301 |||||||||||||||||||| Sbjct: 759389 gccagcctcatatccttctg 759408
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccagcctcatatccttctg 301 |||||||||||||||||||| Sbjct: 727046 gccagcctcatatccttctg 727065
>gb|AY085690.1| Arabidopsis thaliana clone 17110 mRNA, complete sequence Length = 1156 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctcatatccttctgctgatg 307 |||||||||||||||||||| Sbjct: 906 ctcatatccttctgctgatg 887
>gb|AY170493.1| Glycine max Rga332 disease resistance protein-like protein pseudogene, partial sequence Length = 457 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170483.1| Glycine max Rga37 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170480.1| Glycine max Rga32 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AF175394.1|AF175394 Glycine max resistance protein LM12 mRNA, partial cds Length = 1314 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 716 aagcttcttgctttcttgaa 735
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119034 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 caagaatatctgcatgccca 95 |||||||||||||||||||| Sbjct: 33665 caagaatatctgcatgccca 33646
>gb|AF071302.1|AF071302 HIV-1 isolate I3106-c from The Netherlands, gag protein (gag) gene, partial cds Length = 738 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 agcagcagctgcgactggca 249 |||||||||||||||||||| Sbjct: 285 agcagcagctgcgactggca 304
>gb|U56888.1|HIVU56888 Human immunodeficiency virus type 1 gag polyprotein (gag) gene, partial cds Length = 402 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 agcagcagctgcgactggca 249 |||||||||||||||||||| Sbjct: 351 agcagcagctgcgactggca 370
>gb|U55805.1|GMU55805 Glycine max clone RLG3 disease resistance protein homolog gene, partial cds Length = 512 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagcttcttgctttcttgaa 220 |||||||||||||||||||| Sbjct: 62 aagcttcttgctttcttgaa 81
>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete sequence Length = 173053 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ctttcatcttgaacatcggatttg 378 ||||||||||||||||| |||||| Sbjct: 131828 ctttcatcttgaacatctgatttg 131851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,912,032 Number of Sequences: 3902068 Number of extensions: 2912032 Number of successful extensions: 53097 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52990 Number of HSP's gapped (non-prelim): 92 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)