>FOXE3_MOUSE (Q9QY14) Forkhead box protein E3|
          Length = 288

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 21/47 (44%), Positives = 22/47 (46%)
 Frame = +3

Query: 180 PLPPTFREAPFPVPINRHPRPRREPEAVIQRLIRQTSDRQWQPDIPG 320
           P PP F  APFP P    P P   P A   RL R  S    QP+ PG
Sbjct: 170 PPPPPFPYAPFPPP----PAPASAPPA---RLFRLDSLLGLQPEPPG 209

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 156 KRHSGSSIPLPPTFREAPFPVPINRHPRPRREP 254
           + ++  SIPLPP  R AP P P    P   R+P
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376

>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal|
           transduction protein CBL) (Proto-oncogene c-CBL)
           (Casitas B-lineage lymphoma proto-oncogene)
          Length = 913

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +3

Query: 162 HSGSSIPLPPTFREAPFPVPINR------HPRPRREP 254
           H    +P+PPT R+ P P P +R        RP+R P
Sbjct: 526 HKDKPLPIPPTLRDLPPPPPPDRPYSVGAETRPQRRP 562

>CBL_HUMAN (P22681) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal|
           transduction protein CBL) (Proto-oncogene c-CBL)
           (Casitas B-lineage lymphoma proto-oncogene) (RING finger
           protein 55)
          Length = 906

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +3

Query: 162 HSGSSIPLPPTFREAPFPVPINR------HPRPRREP 254
           H    +P+PPT R+ P P P +R        RP+R P
Sbjct: 528 HKDKPLPVPPTLRDLPPPPPPDRPYSVGAESRPQRRP 564

>XDH_CHICK (P47990) Xanthine dehydrogenase/oxidase [Includes: Xanthine|
           dehydrogenase (EC 1.17.1.4) (XD); Xanthine oxidase (EC
           1.17.3.2) (XO) (Xanthine oxidoreductase)]
          Length = 1358

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 20  QHGPTGPCLDVPPRQSSNTDLKFHDPIPS 106
           Q+GP   C  VPP   S T+L   DPI S
Sbjct: 557 QNGPNNLCEPVPPNYISATELFHKDPIAS 585

>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082|
          Length = 721

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 182 SSPNLQGGAIS-CANKSTPSTTTGTRSCNPTPHPPNLRSTMAARHTGS 322
           SSP   G  +S   NKST   TT  +  NPT   P L S  AA  TG+
Sbjct: 457 SSPAAGGSLMSPVVNKSTAPATTQAQPSNPT---PPLASATAAATTGA 501

>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 149  LPKKTFR*QYTSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPP 283
            LP+       T+S N      + +N ST +TTT T +  PTP PP
Sbjct: 3465 LPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTTATA-PTPTPP 3508

>TUS1_YEAST (Q06412) Rho1 guanine nucleotide exchange factor TUS1 (TOR unique|
           function suppressor protein 1)
          Length = 1307

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 176 YTSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPPNLRSTMAAR 310
           +TS  + +G   S +++STP +T   +   P P PP L ST + R
Sbjct: 76  FTSKHSARGNGTS-SSESTPKSTKYVKERRPPPPPPLLYSTESIR 119

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 180 PLPPTFREAPFPVPINRHPRPRREPEAVIQR 272
           P PP  R  P P P  R P PRR    + +R
Sbjct: 587 PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 617

>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Rap1-GTP-interacting adapter molecule) (RIAM)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 73) (Retinoic ac
          Length = 666

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +3

Query: 165 SGSSIPLPPTFREAPFPVPINRHPRPRREPEAVIQRLIRQTSDRQWQPDIPGVA 326
           +GS +P PP    AP P P+   P   R P AV +R       RQ  P  PG A
Sbjct: 594 AGSELPPPPPPPPAPAPAPV---PDSARPPPAVAKR-PPVPPKRQENPGHPGGA 643

>FOXE1_HUMAN (O00358) Forkhead box protein E1 (Thyroid transcription factor 2)|
           (TTF-2) (Forkhead-related protein FKHL15)
          Length = 376

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 149 LPKKTFR*QYTSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPPNLRSTMAARHTG 319
           +P++    +   +P+  GG+ + A+   P+TTTG +    T   P   S  AA + G
Sbjct: 230 VPERPLSPELGPAPSGPGGSCAFASAGAPATTTGYQPAGCTGARPANPSAYAAAYAG 286

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 180 PLPPTFREAPFPVPINRHPRPRREPEAVIQR 272
           P PP  R  P P P  R P PRR    + +R
Sbjct: 573 PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 180 PLPPTFREAPFPVPINRHPRPRREPEAVIQR 272
           P PP  R  P P P  R P PRR    + +R
Sbjct: 592 PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 622

>DRS1_YARLI (Q6CEB8) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 753

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -2

Query: 196 KVGGRGILLPECLFRQEEEKSSLESRYTNIRWNRVMKFEICVGALPRR 53
           K+  +G ++ E L  ++EEK+ L++     +   ++K+E  + + PRR
Sbjct: 643 KIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKYEKEIASRPRR 690

>AROA_CHLPN (Q9Z6M0) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 445

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 100 SIVYSYIYFPDCSSLLLA*KDIQVAVYLFPQ 192
           SI+Y+Y+  PD  +++ A K +  ++  FPQ
Sbjct: 38  SIIYNYLDSPDTEAMICACKQMGASIKKFPQ 68

>TCF8_HUMAN (P37275) Transcription factor 8 (NIL-2-A zinc finger protein)|
           (Negative regulator of IL2)
          Length = 1124

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 236 STTTGTRSCNPTPHPPNLRST 298
           STT G+RS  P+P P NL S+
Sbjct: 693 STTNGSRSSTPSPSPLNLSSS 713

>VPS72_HUMAN (Q15906) Vacuolar protein sorting protein 72 homolog (Protein YL-1)|
           (Transcription factor-like 1)
          Length = 364

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   PEKIISQHGPTGPCLDVPPRQSSNTDLKFHDPIPS 106
           P  II+ H  T P +  P  +  N D++  DP PS
Sbjct: 208 PGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPS 242

>IRF2_MOUSE (P23906) Interferon regulatory factor 2 (IRF-2)|
          Length = 349

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +3

Query: 174 SIPLP-----PTFREAPFPVPINRHP---RPRREPEAVIQRLIRQTSD 293
           S P+P     P F + P P P+   P   RP RE  A +   I++TSD
Sbjct: 296 SCPMPYNSSWPPFTDLPLPAPVTPTPSSSRPDRETRASV---IKKTSD 340

>BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homolog (Novel|
           amplified in breast cancer 1 homolog)
          Length = 633

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 179 TSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHP 280
           T+S NL+    +   + T   T  T+SC+P P P
Sbjct: 362 TTSANLKSDKANFTPQETRGKTKATKSCSPPPPP 395

>SPT21_YEAST (P35209) Protein SPT21|
          Length = 758

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 119 STFQTALLFFLPKKTFR*QYTSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPPNLRS 295
           S+  +A L F PK     +     N +    +    +T S T G R  NP P P  +R+
Sbjct: 216 SSLPSATLPFTPKSQSLFKTNQIKNSRNARTTITINNTNSGTVGRRQTNPMPAPKAVRT 274

>EPHA7_RAT (P54759) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3)
          Length = 998

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 145 EEKSSLESRYTNIRWNRVMKFEICVGALPRRNIQTRSSWAVLGN 14
           EE S L+  YT IR      +++C    P +N   R++W   GN
Sbjct: 56  EEISGLDENYTPIR-----TYQVCQVMEPNQNNWLRTNWISKGN 94

>EPHA7_MOUSE (Q61772) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3) (Embryonic brain kinase) (EBK) (Developmental
           kinase 1) (MDK-1)
          Length = 998

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 145 EEKSSLESRYTNIRWNRVMKFEICVGALPRRNIQTRSSWAVLGN 14
           EE S L+  YT IR      +++C    P +N   R++W   GN
Sbjct: 56  EEISGLDENYTPIR-----TYQVCQVMEPNQNNWLRTNWISKGN 94

>EPHA7_HUMAN (Q15375) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3) (Receptor protein-tyrosine kinase HEK11)
          Length = 998

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 145 EEKSSLESRYTNIRWNRVMKFEICVGALPRRNIQTRSSWAVLGN 14
           EE S L+  YT IR      +++C    P +N   R++W   GN
Sbjct: 56  EEISGLDENYTPIR-----TYQVCQVMEPNQNNWLRTNWISKGN 94

>VSM1_TRYBB (P26331) Variant surface glycoprotein MITAT 1.1 precursor (VSG)|
          Length = 492

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 TSSPNLQGGAISCANKSTPSTTTGT 253
           T  PNLQ G    AN   P+T+TGT
Sbjct: 197 TGYPNLQHGGGGTANTFQPTTSTGT 221

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 173 QYTSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPPNLRSTMAARHTGS 322
           ++TSS     GA SC+ +   S    + +C+P P  P     + + ++G+
Sbjct: 28  RHTSSSGAAEGA-SCSERPAGSLACPSPNCSPLPETPRAHGALTSDNSGT 76

>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C|
          Length = 1103

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
 Frame = +3

Query: 159  RHSGSSIPLPPTFR--------EAPFPVPINRHPRPRREPEAVIQRLIRQTS 290
            R +GS+ P P  F+        + P P P  R P PR  P     R+ RQ S
Sbjct: 1041 RGAGSAQPEPQHFQPKKHNSYPQPPQPYPAQRPPGPRYPPYTTPPRMRRQRS 1092

>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)|
            (Beta'-COP)
          Length = 1000

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 180  PLPPTFREAPFPV----PINRHPRPRREPEAVIQRLIRQTSDRQWQPDIP 317
            P PP+    P PV    PI R P P REPE   +    +  D Q +  +P
Sbjct: 873  PPPPSVARQPSPVRQPSPI-REPSPIREPEPEEEEEQEEFDDDQQEVHVP 921

>PALA_NEUCR (Q7S532) pH-response regulator protein palA/rim-20|
          Length = 886

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 187 GRGILLPECLFRQEEEKSSLESRYTNIRWNR 95
           GR +LL E     EEE S L  +Y   RWNR
Sbjct: 497 GRSLLLAE-----EEEDSRLRLKYGTERWNR 522

>CLFB_STAAR (Q6GDH2) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 873

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 TSSPNLQGGAISCANKSTPSTTTGTRSCNPTPHPPNLRSTMAA 307
           T+S N+   A + + +++ +TTT   S N TP P  ++    A
Sbjct: 88  TNSANVDSTAKTMSTQTSNTTTTEPASTNETPQPTAIKDQATA 130

>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 162 HSGSSIPLPPTFREAPFPVPINRHPRP 242
           HSGS++  PPT   + F VP  +H  P
Sbjct: 440 HSGSAVTGPPTTHVSGFSVPPPQHINP 466

>POLN_EEEV1 (Q306W6) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2470

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
 Frame = +3

Query: 195  FREAPF-------PVPINRHPRPRREPEAVIQR 272
            F++APF       P+P    PR RREPE  IQR
Sbjct: 1784 FKQAPFQFLSDIRPIPA---PRRRREPETDIQR 1813

>RDRP_PEAMV (P29154) RNA-directed RNA polymerase (EC 2.7.7.48)|
          Length = 599

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 PSTTTGTRSCNPTPHPPNLRST 298
           PS+ TG +SC  +PH P  + T
Sbjct: 89  PSSGTGRKSCESSPHRPTTKIT 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,015,660
Number of Sequences: 219361
Number of extensions: 1307651
Number of successful extensions: 4758
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4743
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)