ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 33 0.63
2MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 32 1.4
3APEB_MYCTU (O06634) Probable M18-family aminopeptidase 2 (EC 3.4... 31 1.8
4APEB_MYCBO (P59951) Probable M18-family aminopeptidase 2 (EC 3.4... 31 1.8
5HM21_CAEEL (Q22811) Homeobox protein ceh-21 30 3.1
6SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (... 29 7.0
7GATA_BRUSU (Q8FW67) Glutamyl-tRNA(Gln) amidotransferase subunit ... 29 7.0
8GATA_BRUME (Q8YC57) Glutamyl-tRNA(Gln) amidotransferase subunit ... 29 7.0
9SPTB2_HUMAN (Q01082) Spectrin beta chain, brain 1 (Spectrin, non... 29 7.0
10FAS_CHICK (P12276) Fatty acid synthase (EC 2.3.1.85) [Includes: ... 29 9.1
11TRPE_BACST (Q9X6J4) Anthranilate synthase component 1 (EC 4.1.3.... 29 9.1
12COAT_CAMVE (Q02951) Coat protein 29 9.1
13SCD5_YEAST (P34758) Protein SCD5 (Protein FTB1) 29 9.1
14PHOE_KLEOX (Q01606) Outer membrane pore protein E precursor 29 9.1

>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 231

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 479 DMEGAAVAYVADLFSTPAIFVKAVTDIVDGEKPTAEEFLQNLISVTMALDQAVLQVV 309
           +ME AAVA V   F TP + ++A++DI   E   +  F Q L    +   + VL+V+
Sbjct: 173 EMEAAAVAQVCHQFKTPFVVIRALSDIAGKESHVS--FDQFLEQAAVHSTELVLKVI 227



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>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 229

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 479 DMEGAAVAYVADLFSTPAIFVKAVTDIVDGEKPTA-EEFLQNLISVTMALDQAVLQVVD 306
           +ME  A+A V   F+ P + V+A++D  DG+   + EEFL      + AL   VL ++D
Sbjct: 172 EMEATAIAQVCYAFNVPFVVVRAISDGGDGKASMSFEEFLPLAAKQSSAL---VLGMID 227



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>APEB_MYCTU (O06634) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)|
          Length = 433

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 252
           R  RE   W + PG+++T   + +GSL  WN EQ
Sbjct: 35  RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65



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>APEB_MYCBO (P59951) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)|
          Length = 433

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 252
           R  RE   W + PG+++T   + +GSL  WN EQ
Sbjct: 35  RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65



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>HM21_CAEEL (Q22811) Homeobox protein ceh-21|
          Length = 495

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 216 IFRLPRFVEPRTA*RKVGRSEIRDTFATDEVYHLQDCLVKRHRHRDQVLQKLLGCWLLPI 395
           + R+    EP  A RK     IR TF   ++  LQ    + HR   ++ QKL     L  
Sbjct: 373 VARITGLDEPTPAKRKKTVKVIRLTFTETQLKSLQKSFQQNHRPTREMRQKLSATLELDF 432

Query: 396 NNVGHSF 416
           + VG+ F
Sbjct: 433 STVGNFF 439



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>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related|
           protein 2)
          Length = 1035

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 115 RMARSNRQEFFTRGSRECKTWVESPGKHYTSNNIYSGSLDL 237
           R+A  NR+   T    E  + V  PG H T+NN  + ++DL
Sbjct: 183 RLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDL 223



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>GATA_BRUSU (Q8FW67) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 493

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = -1

Query: 521 HDESAILSNEATVKDMEGAAVAY------VADLFSTPAIFVKAVTDIVDGEKPTAEEFLQ 360
           HD++  ++  +  +  +G A A       V DLF+T  +  +A + I+DG KP  E    
Sbjct: 49  HDQARSMAKASDERIAKGEAGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYE---- 104

Query: 359 NLISVTMALDQAVL 318
           + ++  +  D AV+
Sbjct: 105 STVTANLWADGAVM 118



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>GATA_BRUME (Q8YC57) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 493

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = -1

Query: 521 HDESAILSNEATVKDMEGAAVAY------VADLFSTPAIFVKAVTDIVDGEKPTAEEFLQ 360
           HD++  ++  +  +  +G A A       V DLF+T  +  +A + I+DG KP  E    
Sbjct: 49  HDQARSMAKASDERIAKGEAGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYE---- 104

Query: 359 NLISVTMALDQAVL 318
           + ++  +  D AV+
Sbjct: 105 STVTANLWADGAVM 118



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>SPTB2_HUMAN (Q01082) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta|
            chain 1) (Beta-II spectrin) (Fodrin beta chain)
          Length = 2364

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
 Frame = +1

Query: 58   LIEPSLTKLHSL*NC------TKSHRMARSNRQEFFTRGSRECKTWV---------ESPG 192
            +++  LT LH +         TK+ R+  +N+ E FT+   +   W+         +  G
Sbjct: 1350 VVKEKLTGLHKMWEVLESTTQTKAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYG 1409

Query: 193  KHYTSNNI 216
            KH TS NI
Sbjct: 1410 KHLTSVNI 1417



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>FAS_CHICK (P12276) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2511

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
 Frame = +1

Query: 148  TRGSRECKTWVESPGKHYTSNN-------IYSGSLDLWNPEQHSGRL 267
            TRG      W+ SP +H+ + N       +Y  SL+ W+    +G+L
Sbjct: 1540 TRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLNFWDIMLATGKL 1586



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>TRPE_BACST (Q9X6J4) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 508

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 132 SPRIFYKGVTGM*NLGGIPRETLYIQQYIFRLPRFVEPRTA*RKVGRSEIRDTFATDEVY 311
           SP +FY  + G+  +G  P + + ++         ++P    R+ GRS   D    DE+Y
Sbjct: 281 SPYMFYFRLDGIEIVGSSPEKLIQVRNRRAE----IDPIAGTRRRGRSPAEDEKLADELY 336

Query: 312 H 314
           H
Sbjct: 337 H 337



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>COAT_CAMVE (Q02951) Coat protein|
          Length = 488

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +1

Query: 124 RSNRQEFFTRGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQHSGRLGVQRSE 285
           + ++Q++  +G ++C+ W+ +   HY +      S +  +  Q + +LG+Q  E
Sbjct: 397 KGSKQKYCPKGKKDCRCWISNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIE 450



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>SCD5_YEAST (P34758) Protein SCD5 (Protein FTB1)|
          Length = 872

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 169 KTWVESPGKHYTSNNIYSGSLDLWNPEQHSGRLGVQRSEIH 291
           +T+++   +  T   IY G L     +QH G+L +  S+IH
Sbjct: 772 QTYIQQQQQQQTQQRIYGGQLS--QMQQHPGQLHLNNSDIH 810



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>PHOE_KLEOX (Q01606) Outer membrane pore protein E precursor|
          Length = 349

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 124 RSNRQEFFTRGSRECKTWVESPGKHYTSNNIYSGSL 231
           R+N Q    RG+++ + W  + G  Y +NNIY  ++
Sbjct: 212 RTNDQNLLARGAKKAEAW--ATGLKYDANNIYLATM 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,149,882
Number of Sequences: 219361
Number of extensions: 1732764
Number of successful extensions: 4909
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4909
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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