Clone Name | rbart21g01 |
---|---|
Clone Library Name | barley_pub |
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence Length = 779 Score = 835 bits (421), Expect = 0.0 Identities = 421/421 (100%) Strand = Plus / Minus Query: 3 cgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaa 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 cgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaa 717 Query: 63 acattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagc 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 acattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagc 657 Query: 123 cgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgccca 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 cgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgccca 597 Query: 183 ctctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctgg 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 ctctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctgg 537 Query: 243 agcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 agcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctc 477 Query: 303 gccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtca 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 gccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtca 417 Query: 363 cggtccacctcgagcttgaaccctccggcactgccctgctccccggccaccccgtgcagg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 cggtccacctcgagcttgaaccctccggcactgccctgctccccggccaccccgtgcagg 357 Query: 423 t 423 | Sbjct: 356 t 356
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Minus Query: 265 ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324 ||||||||||| || ||| ||| | |||||||| | | |||||| |||| || |||| Sbjct: 1180 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1121 Query: 325 cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| |||||||||| Sbjct: 1120 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1061 Query: 385 ctccggcactgccctgctccccggccaccccgtgcaggt 423 | ||||| ||||||||||| ||||| || ||||| |||| Sbjct: 1060 cgccggcgctgccctgctcgccggcgacgccgtggaggt 1022
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Plus Query: 265 ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324 ||||||||||| || ||| ||| | |||||||| | | |||||| |||| || |||| Sbjct: 163111 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 163170 Query: 325 cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| |||||||||| Sbjct: 163171 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 163230 Query: 385 ctccggcactgccctgctccccggccaccccgtgcaggt 423 | ||||| ||||||||||| ||||| || ||||| |||| Sbjct: 163231 cgccggcgctgccctgctcgccggcgacgccgtggaggt 163269
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Plus Query: 265 ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324 ||||||||||| || ||| ||| | |||||||| | | |||||| |||| || |||| Sbjct: 13793 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 13852 Query: 325 cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| |||||||||| Sbjct: 13853 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 13912 Query: 385 ctccggcactgccctgctccccggccaccccgtgcaggt 423 | ||||| ||||||||||| ||||| || ||||| |||| Sbjct: 13913 cgccggcgctgccctgctcgccggcgacgccgtggaggt 13951
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Plus Query: 265 ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324 ||||||||||| || ||| ||| | |||||||| | | |||||| |||| || |||| Sbjct: 28378869 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 28378928 Query: 325 cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| |||||||||| Sbjct: 28378929 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 28378988 Query: 385 ctccggcactgccctgctccccggccaccccgtgcaggt 423 | ||||| ||||||||||| ||||| || ||||| |||| Sbjct: 28378989 cgccggcgctgccctgctcgccggcgacgccgtggaggt 28379027
>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full insert sequence Length = 1526 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Minus Query: 265 ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324 ||||||||||| || ||| ||| | |||||||| | | |||||| |||| || |||| Sbjct: 1264 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1205 Query: 325 cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| |||||||||| Sbjct: 1204 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1145 Query: 385 ctccggcactgccctgctccccggccaccccgtgcaggt 423 | ||||| ||||||||||| ||||| || ||||| |||| Sbjct: 1144 cgccggcgctgccctgctcgccggcgacgccgtggaggt 1106
>ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1458 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400 ||||||||||||||| | ||| ||||| ||||| ||||||||||| ||| ||||||| Sbjct: 1320 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 1261 Query: 401 ctccccggccaccccgtgca 420 | ||||||| || ||||||| Sbjct: 1260 cgccccggcgacgccgtgca 1241
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400 ||||||||||||||| | ||| ||||| ||||| ||||||||||| ||| ||||||| Sbjct: 26377149 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 26377208 Query: 401 ctccccggccaccccgtgca 420 | ||||||| || ||||||| Sbjct: 26377209 cgccccggcgacgccgtgca 26377228 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 302 cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361 |||||||||| ||| ||||||| |||||| || | |||||||||||||||| | ||| Sbjct: 26317752 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 26317693 Query: 362 acggtccacc 371 |||||||||| Sbjct: 26317692 acggtccacc 26317683
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400 ||||||||||||||| | ||| ||||| ||||| ||||||||||| ||| ||||||| Sbjct: 51014 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 51073 Query: 401 ctccccggccaccccgtgca 420 | ||||||| || ||||||| Sbjct: 51074 cgccccggcgacgccgtgca 51093
>ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 302 cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361 |||||||||| ||| ||||||| |||||| || | |||||||||||||||| | ||| Sbjct: 1170 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1111 Query: 362 acggtccacc 371 |||||||||| Sbjct: 1110 acggtccacc 1101
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 302 cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361 |||||||||| ||| ||||||| |||||| || | |||||||||||||||| | ||| Sbjct: 130433 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 130374 Query: 362 acggtccacc 371 |||||||||| Sbjct: 130373 acggtccacc 130364
>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full insert sequence Length = 1577 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 302 cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361 |||||||||| ||| ||||||| |||||| || | |||||||||||||||| | ||| Sbjct: 1302 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1243 Query: 362 acggtccacc 371 |||||||||| Sbjct: 1242 acggtccacc 1233
>ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1724 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 ccatcgcccatctcccccctt 268 ||||||||||||||||||||| Sbjct: 176 ccatcgcccatctcccccctt 196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 ccatcgcccatctcccccctt 268 ||||||||||||||||||||| Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ccatcgcccatctcccccctt 268 ||||||||||||||||||||| Sbjct: 36120 ccatcgcccatctcccccctt 36100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 ccatcgcccatctcccccctt 268 ||||||||||||||||||||| Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full insert sequence Length = 1749 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 ccatcgcccatctcccccctt 268 ||||||||||||||||||||| Sbjct: 196 ccatcgcccatctcccccctt 216
>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full insert sequence Length = 705 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385 ||||||||||||| | | ||| ||||| ||||| ||||||||||| Sbjct: 409 cttgttcaccagctccacgtcccggtcgacctccagcttgaaccc 365
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 accctccggcactgccctgc 401 |||||||||||||||||||| Sbjct: 882978 accctccggcactgccctgc 882959
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 attttgcataaaatgggaaa 92 |||||||||||||||||||| Sbjct: 73416 attttgcataaaatgggaaa 73435
>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete sequence Length = 96045 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttcacttattttgcataaaa 85 |||||||||||||||||||| Sbjct: 29584 ttcacttattttgcataaaa 29603
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1) pseudogene and a CpG island, complete sequence Length = 197265 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 ccctccggcactgccctgctccccggcc 410 ||||||| | |||||||||||||||||| Sbjct: 31650 ccctccgcccctgccctgctccccggcc 31623
>gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein C gene, complete cds Length = 1562 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 916 caccgggtgctcgtccgcga 897
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 54862 caccgggtgctcgtccgcga 54843
>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence Length = 109568 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 taaaatgggaaatatactag 100 |||||||||||||||||||| Sbjct: 81268 taaaatgggaaatatactag 81249
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 accgggtgctcgtccgcgag 328 |||||||||||||||||||| Sbjct: 4606525 accgggtgctcgtccgcgag 4606506
>gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) gene, complete cds Length = 1755 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 1059 caccgggtgctcgtccgcga 1040
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gaaacattcacttattttgc 79 |||||||||||||||||||| Sbjct: 101727 gaaacattcacttattttgc 101708
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtgaatggccgatgcgagt 212 |||||||||||||||||||| Sbjct: 6301611 agtgaatggccgatgcgagt 6301630
>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds Length = 1722 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 1029 caccgggtgctcgtccgcga 1010
>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds Length = 1584 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 919 caccgggtgctcgtccgcga 900
>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds Length = 1579 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 916 caccgggtgctcgtccgcga 897
>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds Length = 1584 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caccgggtgctcgtccgcga 327 |||||||||||||||||||| Sbjct: 919 caccgggtgctcgtccgcga 900 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,929,437 Number of Sequences: 3902068 Number of extensions: 2929437 Number of successful extensions: 63384 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63127 Number of HSP's gapped (non-prelim): 255 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)