Clone Name | rbart10f04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC117482.4| Homo sapiens 3 BAC RP11-651J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171333 Score = 44.1 bits (22), Expect = 0.027 Identities = 28/30 (93%) Strand = Plus / Plus Query: 9 agttaaacataccatataacatattaaaaa 38 ||||||| |||||||| ||||||||||||| Sbjct: 94677 agttaaaaataccataaaacatattaaaaa 94706
>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24, complete sequence Length = 173882 Score = 44.1 bits (22), Expect = 0.027 Identities = 25/26 (96%) Strand = Plus / Minus Query: 13 aaacataccatataacatattaaaaa 38 ||||||||||| |||||||||||||| Sbjct: 94256 aaacataccatgtaacatattaaaaa 94231
>gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, complete sequence Length = 202029 Score = 42.1 bits (21), Expect = 0.11 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 aaagttaaacataccatataa 27 ||||||||||||||||||||| Sbjct: 133820 aaagttaaacataccatataa 133840 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 118896 aacatattaaaaacagat 118879
>gb|AC159635.2| Mus musculus BAC clone RP24-111I3 from chromosome 12, complete sequence Length = 168623 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 102543 atataacatatgaaaaacagatcc 102520
>ref|NM_013464.2| Mus musculus aryl-hydrocarbon receptor (Ahr), mRNA Length = 5363 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 4335 atataacatatgaaaaacagatcc 4312
>dbj|AK153678.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630042M20 product:aryl-hydrocarbon receptor, full insert sequence Length = 5495 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 4423 atataacatatgaaaaacagatcc 4400
>dbj|AK155380.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630223D07 product:aryl-hydrocarbon receptor, full insert sequence Length = 5551 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 4483 atataacatatgaaaaacagatcc 4460
>dbj|AK171945.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830021C12 product:aryl-hydrocarbon receptor, full insert sequence Length = 3052 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 1980 atataacatatgaaaaacagatcc 1957
>dbj|AK172436.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830207G14 product:aryl-hydrocarbon receptor, full insert sequence Length = 3052 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 1980 atataacatatgaaaaacagatcc 1957
>gb|BC040248.1| Mus musculus aryl-hydrocarbon receptor, mRNA (cDNA clone IMAGE:2811933), with apparent retained intron Length = 2570 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 1968 atataacatatgaaaaacagatcc 1945
>dbj|AK014512.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631405C13 product:aryl-hydrocarbon receptor, full insert sequence Length = 1278 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 210 atataacatatgaaaaacagatcc 187
>gb|AF325111.1|AF325111 Mus musculus aryl-hydrocarbon receptor (Ahr) gene, complete cds Length = 74146 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 67227 atataacatatgaaaaacagatcc 67204
>dbj|D38417.1|MUSAHRB Mus musculus Ahr mRNA for arylhydrocarbon receptor, complete cds Length = 6006 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 4978 atataacatatgaaaaacagatcc 4955
>gb|L19756.1|MUSAHR11 Mouse DNA sequence, exon 11 Length = 3030 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 1816 atataacatatgaaaaacagatcc 1793
>gb|M94623.1|MUSB1AHR Mouse (strain C571) Ah-receptor (Ah) mRNA including 3'UTR region, complete cds Length = 5149 Score = 40.1 bits (20), Expect = 0.42 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atataacatattaaaaacagatcc 45 ||||||||||| |||||||||||| Sbjct: 4056 atataacatatgaaaaacagatcc 4033
>gb|AC102290.7| Mus musculus chromosome 3, clone RP24-359J7, complete sequence Length = 175819 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 aacataccatataacatat 32 ||||||||||||||||||| Sbjct: 121829 aacataccatataacatat 121847
>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete sequence Length = 223266 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 accatataacatattaaaa 37 ||||||||||||||||||| Sbjct: 150490 accatataacatattaaaa 150472
>gb|AC122485.3| Mus musculus BAC clone RP24-377J10 from chromosome 3, complete sequence Length = 157739 Score = 38.2 bits (19), Expect = 1.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 ttaaacataccatataacatatt 33 ||||| ||||||||||||||||| Sbjct: 96804 ttaaaaataccatataacatatt 96826
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaac 39 ||||||||||||||||||| Sbjct: 84325 catataacatattaaaaac 84343
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF receptor-associated factor 5, a novel gene (MGC14801), a sorting nexin 25 (SNX25) pseudogene and a actin related protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene, complete sequence Length = 180169 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acactgaaagttaaacata 19 ||||||||||||||||||| Sbjct: 25861 acactgaaagttaaacata 25843
>emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chromosome 10 Contains a serine/threonine protein kinase pseudogene, complete sequence Length = 200891 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gaaagttaaacataccata 24 ||||||||||||||||||| Sbjct: 176775 gaaagttaaacataccata 176793
>gb|AC158307.5| Mus musculus chromosome 3, clone RP23-148J20, complete sequence Length = 204891 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 aacataccatataacatat 32 ||||||||||||||||||| Sbjct: 94877 aacataccatataacatat 94859
>emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chromosome 11 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 197012 Score = 38.2 bits (19), Expect = 1.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 8 aagttaaacataccatataacat 30 |||||||||||| |||||||||| Sbjct: 186341 aagttaaacatagcatataacat 186319
>gb|AC079075.6| Homo sapiens chromosome 15, clone RP11-300G22, complete sequence Length = 209955 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaagttaaacataccatat 25 ||||||||||||||||||| Sbjct: 106961 aaagttaaacataccatat 106979
>gb|AC013787.15| Homo sapiens chromosome 15, clone RP11-531E13, complete sequence Length = 176304 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaagttaaacataccatat 25 ||||||||||||||||||| Sbjct: 170349 aaagttaaacataccatat 170331
>gb|AC182361.3| Spermophilus tridecemlineatus clone VMRC20-433G18, complete sequence Length = 140138 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 accatataacatattaaaa 37 ||||||||||||||||||| Sbjct: 32033 accatataacatattaaaa 32051
>gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, complete sequence Length = 76171 Score = 38.2 bits (19), Expect = 1.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 aacataccatataacatattaaa 36 |||||| |||||||||||||||| Sbjct: 15981 aacatagcatataacatattaaa 15959
>gb|AC112184.2| Homo sapiens chromosome 5 clone RP11-168A11, complete sequence Length = 173346 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaacataccatataacata 31 ||||||||||||||||||| Sbjct: 63622 aaacataccatataacata 63604
>gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, complete sequence Length = 179484 Score = 38.2 bits (19), Expect = 1.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 aacataccatataacatattaaa 36 |||||| |||||||||||||||| Sbjct: 171798 aacatagcatataacatattaaa 171776
>gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101061 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaagttaaacataccatat 25 ||||||||||||||||||| Sbjct: 19902 aaagttaaacataccatat 19920
>dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109E10, complete sequence Length = 169313 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaagttaaacataccatat 25 ||||||||||||||||||| Sbjct: 62896 aaagttaaacataccatat 62914
>emb|AL080073.1|HSM800574 Homo sapiens mRNA; cDNA DKFZp564B1462 (from clone DKFZp564B1462) Length = 1913 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acactgaaagttaaacata 19 ||||||||||||||||||| Sbjct: 47 acactgaaagttaaacata 29
>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete sequence Length = 167375 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagatc 44 ||||||||||||||||||| Sbjct: 43377 aacatattaaaaacagatc 43359
>gb|AC152948.1| Mus musculus 10 BAC RP23-89E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 125479 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 18 taccatataacatattaaaaac 39 ||||||||||||||||| |||| Sbjct: 124727 taccatataacatattagaaac 124706
>ref|XM_642721.1| Dictyostelium discoideum hypothetical protein (DDB0206275), partial mRNA Length = 642 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 taccatataacatattaa 35 |||||||||||||||||| Sbjct: 214 taccatataacatattaa 197
>gb|AE001418.1| Plasmodium falciparum 3D7 chromosome 2 section 55 of 73 of the complete sequence Length = 12593 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 6619 catataacatattaaaaa 6602
>gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, complete sequence Length = 172369 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 83497 aacatattaaaaacagat 83514
>gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, complete sequence Length = 203737 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 18 taccatataacatattaaaaac 39 ||||||||||||||||| |||| Sbjct: 182988 taccatataacatattagaaac 183009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 6.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 13 aaacataccatataacatattaaaaa 38 ||||| ||||| |||||||||||||| Sbjct: 9864419 aaacacaccatttaacatattaaaaa 9864444
>emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 in linkage group 24, complete sequence Length = 138451 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 19 accatataacatattaaa 36 |||||||||||||||||| Sbjct: 98439 accatataacatattaaa 98422
>emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 in linkage group 13, complete sequence Length = 176605 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 7 aaagttaaacataccatataac 28 ||||| |||||||||||||||| Sbjct: 52188 aaagtgaaacataccatataac 52167
>gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosome 9, complete sequence Length = 150128 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 148054 aacatattaaaaacagat 148037
>gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome 9, complete sequence Length = 145102 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 tgaaagttaaacatacca 22 |||||||||||||||||| Sbjct: 60222 tgaaagttaaacatacca 60205
>gb|AC126558.4| Mus musculus BAC clone RP23-300A11 from 19, complete sequence Length = 159453 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 aaacataccatataacatatta 34 ||||||| |||||||||||||| Sbjct: 8410 aaacataacatataacatatta 8431
>gb|AC116328.3| Mus musculus BAC clone RP24-131I17 from 15, complete sequence Length = 149291 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acactgaaagttaaacat 18 |||||||||||||||||| Sbjct: 62337 acactgaaagttaaacat 62354
>gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete sequence Length = 220184 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 8590 aacatattaaaaacagat 8573
>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence Length = 208469 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 183143 catataacatattaaaaa 183160
>gb|AC164427.5| Mus musculus BAC clone RP23-189P17 from chromosome 19, complete sequence Length = 216510 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 aaacataccatataacatatta 34 ||||||| |||||||||||||| Sbjct: 76798 aaacataacatataacatatta 76819
>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence Length = 250029 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 20015 catataacatattaaaaa 19998
>emb|AL356751.13| Human DNA sequence from clone RP11-717L20 on chromosome 13, complete sequence Length = 5970 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 7 aaagttaaacataccatataac 28 ||||||||||||||||| |||| Sbjct: 2935 aaagttaaacataccatttaac 2956
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a Wilms' tumour 1-associating protein (WTAP) (KIAA0105) pseudogene, complete sequence Length = 149679 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 acataccatataacatat 32 |||||||||||||||||| Sbjct: 108963 acataccatataacatat 108980
>emb|AL157370.7| Human DNA sequence from clone RP11-289M23 on chromosome 6, complete sequence Length = 34674 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 cactgaaagttaaacataccat 23 ||||||||| |||||||||||| Sbjct: 12705 cactgaaaggtaaacataccat 12726
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 1324890 catataacatattaaaaa 1324907
>emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 in linkage group 18, complete sequence Length = 142119 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 100936 catataacatattaaaaa 100953
>gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, complete sequence Length = 70380 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acatattaaaaacagatc 44 |||||||||||||||||| Sbjct: 20497 acatattaaaaacagatc 20514
>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete sequence Length = 208105 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 tataacatattaaaaaca 40 |||||||||||||||||| Sbjct: 169177 tataacatattaaaaaca 169160 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 aagttaaacataccatat 25 |||||||||||||||||| Sbjct: 116357 aagttaaacataccatat 116374
>gb|AC113350.2| Homo sapiens chromosome 5 clone CTD-2548J21, complete sequence Length = 80117 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 ataacatattaaaaacag 41 |||||||||||||||||| Sbjct: 12676 ataacatattaaaaacag 12659
>gb|AC041005.20| Homo sapiens chromosome 8, clone RP11-69M11, complete sequence Length = 87471 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 aacataccatataacata 31 |||||||||||||||||| Sbjct: 13665 aacataccatataacata 13648
>gb|AC009274.11| Homo sapiens chromosome 7 clone RP11-254L11, complete sequence Length = 150505 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 aaagttaaacataccata 24 |||||||||||||||||| Sbjct: 38294 aaagttaaacataccata 38311
>gb|AC073581.23| Homo sapiens 8 BAC RP11-429O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176601 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 aacataccatataacata 31 |||||||||||||||||| Sbjct: 175365 aacataccatataacata 175348
>dbj|AK137209.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530047A02 product:unclassifiable, full insert sequence Length = 4964 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 ataacatattaaaaacag 41 |||||||||||||||||| Sbjct: 3002 ataacatattaaaaacag 2985
>gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, complete sequence Length = 188095 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 81247 aacatattaaaaacagat 81230
>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete sequence Length = 184857 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aagttaaacataccatat 25 |||||||||||||||||| Sbjct: 20171 aagttaaacataccatat 20154
>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence Length = 128683 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acatattaaaaacagatc 44 |||||||||||||||||| Sbjct: 119863 acatattaaaaacagatc 119880
>gb|AC010369.7| Homo sapiens chromosome 5 clone CTD-2048F20, complete sequence Length = 160459 Score = 36.2 bits (18), Expect = 6.6 Identities = 25/26 (96%), Gaps = 1/26 (3%) Strand = Plus / Minus Query: 13 aaacataccatataacatattaaaaa 38 |||||||||||| ||||||||||||| Sbjct: 43616 aaacataccata-aacatattaaaaa 43592
>gb|AC026795.6| Homo sapiens chromosome 5 clone CTD-2287L22, complete sequence Length = 156277 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 atataacatattaaaaac 39 |||||||||||||||||| Sbjct: 135402 atataacatattaaaaac 135419
>emb|BX649562.12| Zebrafish DNA sequence from clone CH211-244A23 in linkage group 18, complete sequence Length = 133163 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 22 atataacatattaaaaacagat 43 ||||||||||||||| |||||| Sbjct: 86894 atataacatattaaacacagat 86915
>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome Length = 212482 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 taccatataacatattaa 35 |||||||||||||||||| Sbjct: 52204 taccatataacatattaa 52187
>gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F5, complete sequence Length = 103115 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 19 accatataacatattaaa 36 |||||||||||||||||| Sbjct: 31154 accatataacatattaaa 31137
>gb|AC035144.3|AC035144 Homo sapiens chromosome 5 clone CTD-2220M12, complete sequence Length = 112626 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 atataacatattaaaaac 39 |||||||||||||||||| Sbjct: 57880 atataacatattaaaaac 57863
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 6.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 13 aaacataccatataacatattaaaaa 38 ||||| ||||| |||||||||||||| Sbjct: 9862540 aaacacaccatttaacatattaaaaa 9862565
>gb|AC114744.7| Homo sapiens BAC clone RP11-115L11 from 4, complete sequence Length = 115512 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 taacatattaaaaacaga 42 |||||||||||||||||| Sbjct: 13519 taacatattaaaaacaga 13536
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 36.2 bits (18), Expect = 6.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 13 aaacataccatataacatattaaaaa 38 ||||| ||||| |||||||||||||| Sbjct: 26808 aaacacaccatttaacatattaaaaa 26833
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 36.2 bits (18), Expect = 6.6 Identities = 24/26 (92%) Strand = Plus / Minus Query: 13 aaacataccatataacatattaaaaa 38 ||||| ||||| |||||||||||||| Sbjct: 10078 aaacacaccatttaacatattaaaaa 10053
>gb|AC138612.1| Homo sapiens BAC clone CTD-2293E22 from 2, complete sequence Length = 158057 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 atataacatattaaaaac 39 |||||||||||||||||| Sbjct: 142636 atataacatattaaaaac 142653
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 1296395 catataacatattaaaaa 1296412
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete sequence Length = 226160 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aagttaaacataccatat 25 |||||||||||||||||| Sbjct: 212340 aagttaaacataccatat 212323
>dbj|AB019224.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22 Length = 67720 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 11013 catataacatattaaaaa 11030
>emb|CR387997.18| Zebrafish DNA sequence from clone DKEY-13E3 in linkage group 4, complete sequence Length = 158108 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 ttaaacataccatataac 28 |||||||||||||||||| Sbjct: 99481 ttaaacataccatataac 99498
>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence Length = 138158 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacatattaaaaacagat 43 |||||||||||||||||| Sbjct: 119040 aacatattaaaaacagat 119023
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 1338097 catataacatattaaaaa 1338114
>gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, complete sequence Length = 174793 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 119378 catataacatattaaaaa 119395
>emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on chromosome 2, complete sequence Length = 99774 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 catattaaaaacagatcc 45 |||||||||||||||||| Sbjct: 16259 catattaaaaacagatcc 16242
>emb|AL954843.8| Zebrafish DNA sequence from clone DKEY-149K8 in linkage group 15, complete sequence Length = 204599 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 17 ataccatataacatattaaaaa 38 |||||||| ||||||||||||| Sbjct: 139689 ataccatacaacatattaaaaa 139668
>gb|AC129329.3| Mus musculus BAC clone RP23-43M12 from 10, complete sequence Length = 176092 Score = 36.2 bits (18), Expect = 6.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 aaacataccatataacatatta 34 ||||||| |||||||||||||| Sbjct: 62933 aaacatatcatataacatatta 62954
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 catataacatattaaaaa 38 |||||||||||||||||| Sbjct: 1261531 catataacatattaaaaa 1261548
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 ataacatattaaaaacag 41 |||||||||||||||||| Sbjct: 107139 ataacatattaaaaacag 107122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 681,790 Number of Sequences: 3902068 Number of extensions: 681790 Number of successful extensions: 194577 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 193950 Number of HSP's gapped (non-prelim): 629 length of query: 50 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 30 effective length of database: 17,155,003,908 effective search space: 514650117240 effective search space used: 514650117240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)