ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UFO_ARATH (Q39090) UNUSUAL FLORAL ORGANS protein (F-box only pro... 36 0.080
2KLDC5_MOUSE (Q8BFQ9) Kelch domain-containing protein 5 33 0.52
3KLDC5_HUMAN (Q9P2K6) Kelch domain-containing protein 5 32 1.5
4Y1321_METJA (Q58717) Hypothetical protein MJ1321 30 4.4
5HAGA2_PORGI (Q51845) Hemagglutinin A precursor 30 7.5
6YKKA_CAEEL (Q95QY7) Putative zinc finger protein C02F5.12 30 7.5
7HAGA1_PORGI (P59915) Hemagglutinin A precursor 30 7.5
8ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ... 29 9.8

>UFO_ARATH (Q39090) UNUSUAL FLORAL ORGANS protein (F-box only protein 1)|
           (AtFBX1)
          Length = 442

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 27/103 (26%), Positives = 42/103 (40%)
 Frame = +1

Query: 40  YKVMWLRNDGNHEVYDSLQNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCSEPEG 219
           Y V  L ++  H       ++W      P    L        + V V    Y M   P  
Sbjct: 220 YAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLE-----SGKMVYVQGKFYCMNYSPFS 274

Query: 220 VLSYDVSTGTWIHFIIPLPLHLTDHTLAEFQGKIMLVGLLCKN 348
           VLSY+V+   WI    P+   L   +L E +G+++LV  + K+
Sbjct: 275 VLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKS 317



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +2

Query: 299 LPSSRGRSCLWACCARTQR---PCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKH--MRM 463
           L  S+GR  L A   +++      + +W LQ+    W E++RMP     +F  +      
Sbjct: 301 LLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGGKGF 360

Query: 464 TCLGNSGLLMLSLKAKRMNRL 526
            C+GN   +M+ L+   +  L
Sbjct: 361 ECVGNQEFVMIVLRGTSLQLL 381



to top

>KLDC5_MOUSE (Q8BFQ9) Kelch domain-containing protein 5|
          Length = 493

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +1

Query: 37  GYKVMWLRNDGNHEVYDSLQNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCSEP- 213
           GY++        H  Y+ + N W Q              NF+   VAV S LY +  +  
Sbjct: 248 GYRITSQEISAAHS-YNPITNEWLQVASMNQKRS-----NFKL--VAVNSKLYAIGGQAV 299

Query: 214 EGVLSYDVSTGTWIHFIIPLPLHLTDHTLAEFQGKIMLVG 333
             V  Y+     W +F+ PLP  L + +  E +GKI ++G
Sbjct: 300 SNVECYNPEQDAW-NFVAPLPNPLAEFSACECKGKIYVIG 338



to top

>KLDC5_HUMAN (Q9P2K6) Kelch domain-containing protein 5|
          Length = 505

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = +1

Query: 37  GYKVMWLRNDGNHEVYDSLQNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCSEP- 213
           GY++        H  Y+   N W Q              NF+   VAV S LY +  +  
Sbjct: 260 GYRITSQEISAAHS-YNPSTNEWLQVASMNQKRS-----NFKL--VAVNSKLYAIGGQAV 311

Query: 214 EGVLSYDVSTGTWIHFIIPLPLHLTDHTLAEFQGKIMLVG 333
             V  Y+     W +F+ PLP  L + +  E +GKI ++G
Sbjct: 312 SNVECYNPEQDAW-NFVAPLPNPLAEFSACECKGKIYVIG 350



to top

>Y1321_METJA (Q58717) Hypothetical protein MJ1321|
          Length = 713

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
 Frame = +1

Query: 31  NEGYKVMWLRNDGNHEVYDSLQNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCSE 210
           N   +V+ +R +  ++V+ S   +    G     I LP    F S PV + + L F C  
Sbjct: 589 NSNIEVISIRKNNKYKVFTSDYRIGSVFGN--DGIFLPHKTPFGSNPVKLSTWLRFNCGN 646

Query: 211 PEGV---------------LSYDVSTGTWIHFIIPLPLHLTD 291
            EG+               ++Y    G   +  IP P+H  D
Sbjct: 647 EEGLKINESIMQLLYDLTKMNYSALYGEGRYLRIPAPIHYAD 688



to top

>HAGA2_PORGI (Q51845) Hemagglutinin A precursor|
          Length = 2628

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +1

Query: 37  GYKVMWLRNDGNHEVYDSL---QNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCS 207
           GY+++W   D +H  Y +    ++ WF  G  P  +  P          A  S   F+  
Sbjct: 76  GYQMLW---DADHNQYGASIPEESFWFANGTIPAGLYDPFEYKVPVNADASFSPTNFVL- 131

Query: 208 EPEGVLSYDVSTGTWIHFII 267
             +G  S D+  GT+ + II
Sbjct: 132 --DGTASADIPAGTYDYVII 149



to top

>YKKA_CAEEL (Q95QY7) Putative zinc finger protein C02F5.12|
          Length = 380

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +1

Query: 277 LHLTDHTLAEFQGKI--MLVGLLCKNAATLRLHLGVAEDDSPLEGGGQNA 420
           L L DH L     KI   L G  C N   +R H   A  +  +EG G  A
Sbjct: 257 LRLLDHALTHSNRKIPCKLCGFECTNVRRMRSHYAKAHPNERVEGYGMKA 306



to top

>HAGA1_PORGI (P59915) Hemagglutinin A precursor|
          Length = 2164

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +1

Query: 37  GYKVMWLRNDGNHEVYDSL---QNMWFQPGEFPPSIKLPLALNFRSQPVAVGSTLYFMCS 207
           GY+++W   D +H  Y +    ++ WF  G  P  +  P          A  S   F+  
Sbjct: 76  GYQMLW---DADHNQYGASIPEESFWFANGTIPAGLYDPFEYKVPVNADASFSPTNFVL- 131

Query: 208 EPEGVLSYDVSTGTWIHFII 267
             +G  S D+  GT+ + II
Sbjct: 132 --DGTASADIPAGTYDYVII 149



to top

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -1

Query: 410  PPPSRGESSSATPRCRRRVAAFLHSR-----PTSMIFPWNSASVWSVRCSGSGM 264
            PPPS   SSSA+P   R+    + SR     P S     +S++V S  CS SG+
Sbjct: 3621 PPPSAAPSSSASPHASRKSWPPVGSRASAAKPPSFPPLSSSSTVTSSSCSTSGV 3674


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,082,459
Number of Sequences: 219361
Number of extensions: 2150391
Number of successful extensions: 5647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5646
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top