ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ577363.1|TAE577363 Triticum aestivum partial mRNA for puta... 767 0.0
2ref|XM_463655.1| Oryza sativa (japonica cultivar-group), predic... 620 e-174
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 620 e-174
4dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic D... 620 e-174
5gb|AY104147.1| Zea mays PCO106418 mRNA sequence 486 e-134
6ref|NM_102496.3| Arabidopsis thaliana unknown protein AT1G27340 ... 98 4e-17
7gb|BT025325.1| Arabidopsis thaliana At1g27340 mRNA, complete cds 98 4e-17
8emb|BX815904.1|CNS0ABSY Arabidopsis thaliana Full-length cDNA Co... 98 4e-17
9emb|BX816952.1|CNS0ABOV Arabidopsis thaliana Full-length cDNA Co... 98 4e-17
10gb|AY085471.1| Arabidopsis thaliana clone 153013 mRNA, complete ... 98 4e-17
11gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana... 98 4e-17
12gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis tha... 48 0.035
13gb|AC134449.3| Mus musculus BAC clone RP24-213M16 from chromosom... 46 0.14
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
15gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana... 46 0.14
16dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
17dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
18gb|AC145301.4| Mus musculus BAC clone RP24-68G17 from 3, complet... 46 0.14
19gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete s... 42 2.1
20gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, compl... 40 8.4
21ref|XM_446204.1| Candida glabrata CBS138, CAGL0F05379g partial mRNA 40 8.4
22ref|XM_800698.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
23gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete... 40 8.4
24gb|AC004909.2| Homo sapiens PAC clone RP5-856O24 from 7, complet... 40 8.4
25gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete se... 40 8.4
26gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete s... 40 8.4
27gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete s... 40 8.4
28gb|AC158961.3| Mus musculus chromosome 1, clone RP23-316E20, com... 40 8.4
29gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, com... 40 8.4
30emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.4
31emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 8.4
32gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, co... 40 8.4
33gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, com... 40 8.4
34emb|BX321868.13| Zebrafish DNA sequence from clone RP71-41I21, c... 40 8.4
35gb|AC104894.14| Mus musculus chromosome 1, clone RP23-290I22, co... 40 8.4

>emb|AJ577363.1|TAE577363 Triticum aestivum partial mRNA for putative F-box protein
          Length = 595

 Score =  767 bits (387), Expect = 0.0
 Identities = 439/455 (96%), Gaps = 1/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gctgaatggaagagctcctaatgagggttacaaagtgatgtggttgcgaaatgatggaaa 71
           ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 137 gctgaatggaagaacttctaatgagggttgcaaagtgatgtggttgcgaaatgatggaaa 196

                                                                       
Query: 72  tcatgaggtctacgactctctgcagaatatgtggtttcagccaggcgagtttcctccaag 131
           |||||| |||||||||||  ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 197 tcatgaagtctacgactcagtgcagaatatgtggtctcagccaggcgcgtttcctccaag 256

                                                                       
Query: 132 catcaagctcccacttgctctaaatttcaggtcacagccagtcgcggttggcagcacact 191
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 257 catcaagctcccacttgctctaaatttcaggtcacagcctgtcgcggttggcagcacgct 316

                                                                       
Query: 192 gtacttcatgtgctcagaacccgagggtgtgttgtcatatgatgtaagcaccgggacttg 251
           |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct: 317 gtacttcatgtgctcagaacccgagggtgttttgtcatatgatgtaagcactgggatttg 376

                                                                       
Query: 252 gattcatttcatcatcccgctgccgctgcatctgactgaccacacacttgccgagttcca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gattcatttcatcatcccgctgccgctgcatctgactgaccacacacttgccgagttcca 436

                                                                       
Query: 312 ggggaagatcatgcttgtgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatct 371
           ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct: 437 ggggaagatcatgcttgtgggcctgctgtgcaaaaacgcagc-aacctgcgtctgcatct 495

                                                                       
Query: 372 gggagttgcagaagatgactctcctctggaaggaggtggacagaatgccaaatatctggt 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggagttgcagaagatgactctcctctggaaggaggtggacagaatgccaaatatctggt 555

                                              
Query: 432 gcttagaattctacggtaagcacatgaggatgacc 466
           |||||||||||||||||||||||||||||||||||
Sbjct: 556 gcttagaattctacggtaagcacatgaggatgacc 590



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>ref|XM_463655.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score =  620 bits (313), Expect = e-174
 Identities = 522/589 (88%), Gaps = 2/589 (0%)
 Strand = Plus / Plus

                                                                        
Query: 29   ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88
            ||||||| ||||||||||| ||||||||  |||||||||| ||| |||| ||||| || |
Sbjct: 533  ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 592

                                                                        
Query: 89   ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148
            || || |||||||||||| |   ||||||   ||||||||||||||||| || || ||||
Sbjct: 593  ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 652

                                                                        
Query: 149  ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208
            |||||||||| ||||||||||| || |||||||||||||  || |||||||||||  |||
Sbjct: 653  ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 712

                                                                        
Query: 209  aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268
            |||| |||||||| ||||| |||||||||||||| ||||  ||||  || ||| ||||||
Sbjct: 713  aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 772

                                                                        
Query: 269  cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328
            | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| |
Sbjct: 773  cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 832

                                                                        
Query: 329  tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388
            |||| ||||| ||||| || ||||||||  || |||||||| ||||||||||||||||||
Sbjct: 833  tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 891

                                                                        
Query: 389  actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 951

                                                                        
Query: 449  aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508
            |||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 952  aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 1011

                                                                        
Query: 509  aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568
            ||||| ||||||||||||||||  ||||| |||| ||| |||||||||||||||||| ||
Sbjct: 1012 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 1070

                                                             
Query: 569  tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617
            ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1071 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 1119



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  620 bits (313), Expect = e-174
 Identities = 522/589 (88%), Gaps = 2/589 (0%)
 Strand = Plus / Minus

                                                                            
Query: 29       ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88
                ||||||| ||||||||||| ||||||||  |||||||||| ||| |||| ||||| || |
Sbjct: 40436363 ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 40436304

                                                                            
Query: 89       ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148
                || || |||||||||||| |   ||||||   ||||||||||||||||| || || ||||
Sbjct: 40436303 ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 40436244

                                                                            
Query: 149      ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208
                |||||||||| ||||||||||| || |||||||||||||  || |||||||||||  |||
Sbjct: 40436243 ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 40436184

                                                                            
Query: 209      aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268
                |||| |||||||| ||||| |||||||||||||| ||||  ||||  || ||| ||||||
Sbjct: 40436183 aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 40436124

                                                                            
Query: 269      cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328
                | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| |
Sbjct: 40436123 cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 40436064

                                                                            
Query: 329      tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388
                |||| ||||| ||||| || ||||||||  || |||||||| ||||||||||||||||||
Sbjct: 40436063 tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 40436005

                                                                            
Query: 389      actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40436004 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 40435945

                                                                            
Query: 449      aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508
                |||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 40435944 aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 40435885

                                                                            
Query: 509      aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568
                ||||| ||||||||||||||||  ||||| |||| ||| |||||||||||||||||| ||
Sbjct: 40435884 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 40435826

                                                                 
Query: 569      tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617
                ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 40435825 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 40435777



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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score =  620 bits (313), Expect = e-174
 Identities = 522/589 (88%), Gaps = 2/589 (0%)
 Strand = Plus / Minus

                                                                         
Query: 29    ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88
             ||||||| ||||||||||| ||||||||  |||||||||| ||| |||| ||||| || |
Sbjct: 87604 ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 87545

                                                                         
Query: 89    ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148
             || || |||||||||||| |   ||||||   ||||||||||||||||| || || ||||
Sbjct: 87544 ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 87485

                                                                         
Query: 149   ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208
             |||||||||| ||||||||||| || |||||||||||||  || |||||||||||  |||
Sbjct: 87484 ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 87425

                                                                         
Query: 209   aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268
             |||| |||||||| ||||| |||||||||||||| ||||  ||||  || ||| ||||||
Sbjct: 87424 aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 87365

                                                                         
Query: 269   cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328
             | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| |
Sbjct: 87364 cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 87305

                                                                         
Query: 329   tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388
             |||| ||||| ||||| || ||||||||  || |||||||| ||||||||||||||||||
Sbjct: 87304 tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 87246

                                                                         
Query: 389   actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87245 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 87186

                                                                         
Query: 449   aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508
             |||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 87185 aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 87126

                                                                         
Query: 509   aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568
             ||||| ||||||||||||||||  ||||| |||| ||| |||||||||||||||||| ||
Sbjct: 87125 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 87067

                                                              
Query: 569   tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617
             ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 87066 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 87018



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>gb|AY104147.1| Zea mays PCO106418 mRNA sequence
          Length = 1756

 Score =  486 bits (245), Expect = e-134
 Identities = 436/497 (87%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                        
Query: 121  tttcctccaagcatcaagctcccacttgctctaaatttcaggtcacagccagtcgcggtt 180
            ||||||||||||||||| || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 930  tttcctccaagcatcaaacttccacttgctctaaatttgaggtcacaaccagtggcggtt 989

                                                                        
Query: 181  ggcagcacactgtacttcatgtgctcagaacccgagggtgtgttgtcatatgatgtaagc 240
            |||||||   | |||||||||||| ||||||| || ||||| ||||||||||||||||||
Sbjct: 990  ggcagcatgatatacttcatgtgcgcagaaccagatggtgttttgtcatatgatgtaagc 1049

                                                                        
Query: 241  accgggacttggattcatttcatcatcccgctgccgctgcatctgactgaccacacactt 300
            ||||||| |||||  || ||   |||||| ||||| |||||||||||||| |||||||||
Sbjct: 1050 accgggatttggaggcaatttgccatcccactgccactgcatctgactgatcacacactt 1109

                                                                        
Query: 301  gccgagttccaggggaagatcatgcttgtgggcctgctgtgcaagaacgcagcgaccctg 360
            |||||||||||||| | | | ||||| ||||| ||||||||||| || ||||||||| ||
Sbjct: 1110 gccgagttccagggaagggttatgctggtgggtctgctgtgcaaaaatgcagcgacc-tg 1168

                                                                        
Query: 361  cgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatgcc 420
            | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 catctgcatatgggagttgcagaagatgactctcctctggaaggaggtggacagaatgcc 1228

                                                                        
Query: 421  aaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaacag 480
            |||| ||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 1229 aaatctctggtgcttagagttctacggtaagcacatgaagatgaaatgcctgggcaacag 1288

                                                                        
Query: 481  cggcttgctcatgctctccttgaaggcgaagcgaatgaaccgcctcgtgatgtacaaccc 540
             || ||||||||||||||||||||||||||||  ||||||||||| || |  ||||| ||
Sbjct: 1289 tggtttgctcatgctctccttgaaggcgaagcatatgaaccgccttgttacatacaa-cc 1347

                                                                        
Query: 541  ttgtgagcaaggagtggcagaaggtacctgattgcatgctcccttgcagccgcaaaaagc 600
            || |||  | ||||||||||||||| |||||||||||||| || || || || |||| ||
Sbjct: 1348 ttttgaaaagggagtggcagaaggttcctgattgcatgctaccatggagtcgaaaaaggc 1407

                             
Query: 601  agtggatagcatgtggc 617
            | |||||| ||||||||
Sbjct: 1408 aatggataacatgtggc 1424



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>ref|NM_102496.3| Arabidopsis thaliana unknown protein AT1G27340 mRNA, complete cds
          Length = 1853

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 359  tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
            ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 1329 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1388

                                                                        
Query: 419  ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
            ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 1389 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1448

             
Query: 479  a 479
            |
Sbjct: 1449 a 1449



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>gb|BT025325.1| Arabidopsis thaliana At1g27340 mRNA, complete cds
          Length = 1404

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 359  tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
            ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 1108 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1167

                                                                        
Query: 419  ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
            ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 1168 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1227

             
Query: 479  a 479
            |
Sbjct: 1228 a 1228



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>emb|BX815904.1|CNS0ABSY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH16ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1618

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 359  tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
            ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 1243 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1302

                                                                        
Query: 419  ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
            ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 1303 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1362

             
Query: 479  a 479
            |
Sbjct: 1363 a 1363



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>emb|BX816952.1|CNS0ABOV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH78ZD04 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1763

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 359  tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
            ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 1331 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1390

                                                                        
Query: 419  ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
            ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 1391 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1450

             
Query: 479  a 479
            |
Sbjct: 1451 a 1451



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>gb|AY085471.1| Arabidopsis thaliana clone 153013 mRNA, complete sequence
          Length = 1497

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 359  tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
            ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 1189 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1248

                                                                        
Query: 419  ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
            ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 1249 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1308

             
Query: 479  a 479
            |
Sbjct: 1309 a 1309



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>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I,
             complete sequence
          Length = 99690

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                         
Query: 359   tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418
             ||||| ||||| |||||| ||||||||||||| ||  | ||||||||||| |||||||||
Sbjct: 41446 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 41505

                                                                         
Query: 419   ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478
             ||||| || |||||||| || || ||||| |||||||| |||||||  || |||||||||
Sbjct: 41506 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 41565

              
Query: 479   a 479
             |
Sbjct: 41566 a 41566



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>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 53889

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 400  gaaggaggtggacagaatgccaaa 423
            ||||||||||||||||||||||||
Sbjct: 7397 gaaggaggtggacagaatgccaaa 7420



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>gb|AC134449.3| Mus musculus BAC clone RP24-213M16 from chromosome 3, complete
            sequence
          Length = 174678

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 13   ctgaatggaagagctcctaatga 35
            |||||||||||||||||||||||
Sbjct: 3401 ctgaatggaagagctcctaatga 3379



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 401      aaggaggtggacagaatgccaaa 423
                |||||||||||||||||||||||
Sbjct: 27166681 aaggaggtggacagaatgccaaa 27166659



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>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I,
             complete sequence
          Length = 97554

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 402   aggaggtggacagaatgccaaatatct 428
             |||||||||||||||||||||| ||||
Sbjct: 25019 aggaggtggacagaatgccaaagatct 24993



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>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 401   aaggaggtggacagaatgccaaa 423
             |||||||||||||||||||||||
Sbjct: 63130 aaggaggtggacagaatgccaaa 63108



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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 401   aaggaggtggacagaatgccaaa 423
             |||||||||||||||||||||||
Sbjct: 17352 aaggaggtggacagaatgccaaa 17330



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>gb|AC145301.4| Mus musculus BAC clone RP24-68G17 from 3, complete sequence
          Length = 224101

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 13    ctgaatggaagagctcctaatga 35
             |||||||||||||||||||||||
Sbjct: 51838 ctgaatggaagagctcctaatga 51860



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>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence
          Length = 116075

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 403   ggaggtggacagaatgccaaa 423
             |||||||||||||||||||||
Sbjct: 83076 ggaggtggacagaatgccaaa 83096



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>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence
          Length = 163637

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    tacttcatgtgctcagaacc 212
              ||||||||||||||||||||
Sbjct: 143512 tacttcatgtgctcagaacc 143493



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>ref|XM_446204.1| Candida glabrata CBS138, CAGL0F05379g partial mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   atggaaatcatgaggtctac 84
            ||||||||||||||||||||
Sbjct: 1328 atggaaatcatgaggtctac 1347



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>ref|XM_800698.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508263.10) partial mRNA
          Length = 3009

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 261  catcatcccgctgccgctgcatct 284
            |||||| |||||||||||||||||
Sbjct: 1924 catcatgccgctgccgctgcatct 1901



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>gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete sequence
          Length = 112392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   tacttcatgtgctcagaacc 212
             ||||||||||||||||||||
Sbjct: 39817 tacttcatgtgctcagaacc 39798



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>gb|AC004909.2| Homo sapiens PAC clone RP5-856O24 from 7, complete sequence
          Length = 132050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   acttgctctaaatttcaggt 163
             ||||||||||||||||||||
Sbjct: 95960 acttgctctaaatttcaggt 95979



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>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence
          Length = 119355

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ttggattcatttcatcatcc 268
             ||||||||||||||||||||
Sbjct: 89596 ttggattcatttcatcatcc 89615



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>gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete sequence
          Length = 145905

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    ttggattcatttcatcatcc 268
              ||||||||||||||||||||
Sbjct: 118302 ttggattcatttcatcatcc 118321



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    ttggattcatttcatcatcc 268
              ||||||||||||||||||||
Sbjct: 104920 ttggattcatttcatcatcc 104939



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ttggattcatttcatcatcc 268
             ||||||||||||||||||||
Sbjct: 69471 ttggattcatttcatcatcc 69490



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>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence
          Length = 131577

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ttggattcatttcatcatcc 268
             ||||||||||||||||||||
Sbjct: 24120 ttggattcatttcatcatcc 24139



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ttggattcatttcatcatcc 268
             ||||||||||||||||||||
Sbjct: 10739 ttggattcatttcatcatcc 10758



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>gb|AC158961.3| Mus musculus chromosome 1, clone RP23-316E20, complete sequence
          Length = 202205

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ttgctctaaatttcaggtca 165
             ||||||||||||||||||||
Sbjct: 13998 ttgctctaaatttcaggtca 14017



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>gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, complete sequence
          Length = 172709

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ccaggggaagatcatgcttg 328
             ||||||||||||||||||||
Sbjct: 44515 ccaggggaagatcatgcttg 44496



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      agggttacaaagtgatgtgg 54
               ||||||||||||||||||||
Sbjct: 2373654 agggttacaaagtgatgtgg 2373635



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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     atggaaatcatgaggtctac 84
              ||||||||||||||||||||
Sbjct: 545835 atggaaatcatgaggtctac 545816



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>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence
          Length = 196152

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 237  aagcaccgggacttggattcattt 260
            ||||||| ||||||||||||||||
Sbjct: 1645 aagcaccaggacttggattcattt 1622



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>gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, complete sequence
          Length = 158806

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   aagcaccgggacttggattcattt 260
             ||||||| ||||||||||||||||
Sbjct: 25222 aagcaccaggacttggattcattt 25245



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>emb|BX321868.13| Zebrafish DNA sequence from clone RP71-41I21, complete sequence
          Length = 135717

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 218  gtgtgttgtcatatgatgtaagca 241
            |||||||| |||||||||||||||
Sbjct: 3692 gtgtgttgacatatgatgtaagca 3715



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>gb|AC104894.14| Mus musculus chromosome 1, clone RP23-290I22, complete sequence
          Length = 185038

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ttgctctaaatttcaggtca 165
             ||||||||||||||||||||
Sbjct: 95485 ttgctctaaatttcaggtca 95504


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,507,088
Number of Sequences: 3902068
Number of extensions: 5507088
Number of successful extensions: 96770
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96638
Number of HSP's gapped (non-prelim): 119
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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