Clone Name | basd3o05 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ577363.1|TAE577363 Triticum aestivum partial mRNA for putative F-box protein Length = 595 Score = 767 bits (387), Expect = 0.0 Identities = 439/455 (96%), Gaps = 1/455 (0%) Strand = Plus / Plus Query: 12 gctgaatggaagagctcctaatgagggttacaaagtgatgtggttgcgaaatgatggaaa 71 ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 137 gctgaatggaagaacttctaatgagggttgcaaagtgatgtggttgcgaaatgatggaaa 196 Query: 72 tcatgaggtctacgactctctgcagaatatgtggtttcagccaggcgagtttcctccaag 131 |||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||| Sbjct: 197 tcatgaagtctacgactcagtgcagaatatgtggtctcagccaggcgcgtttcctccaag 256 Query: 132 catcaagctcccacttgctctaaatttcaggtcacagccagtcgcggttggcagcacact 191 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 257 catcaagctcccacttgctctaaatttcaggtcacagcctgtcgcggttggcagcacgct 316 Query: 192 gtacttcatgtgctcagaacccgagggtgtgttgtcatatgatgtaagcaccgggacttg 251 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| Sbjct: 317 gtacttcatgtgctcagaacccgagggtgttttgtcatatgatgtaagcactgggatttg 376 Query: 252 gattcatttcatcatcccgctgccgctgcatctgactgaccacacacttgccgagttcca 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 gattcatttcatcatcccgctgccgctgcatctgactgaccacacacttgccgagttcca 436 Query: 312 ggggaagatcatgcttgtgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatct 371 ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 437 ggggaagatcatgcttgtgggcctgctgtgcaaaaacgcagc-aacctgcgtctgcatct 495 Query: 372 gggagttgcagaagatgactctcctctggaaggaggtggacagaatgccaaatatctggt 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 gggagttgcagaagatgactctcctctggaaggaggtggacagaatgccaaatatctggt 555 Query: 432 gcttagaattctacggtaagcacatgaggatgacc 466 ||||||||||||||||||||||||||||||||||| Sbjct: 556 gcttagaattctacggtaagcacatgaggatgacc 590
>ref|XM_463655.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1155 Score = 620 bits (313), Expect = e-174 Identities = 522/589 (88%), Gaps = 2/589 (0%) Strand = Plus / Plus Query: 29 ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88 ||||||| ||||||||||| |||||||| |||||||||| ||| |||| ||||| || | Sbjct: 533 ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 592 Query: 89 ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148 || || |||||||||||| | |||||| ||||||||||||||||| || || |||| Sbjct: 593 ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 652 Query: 149 ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208 |||||||||| ||||||||||| || ||||||||||||| || ||||||||||| ||| Sbjct: 653 ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 712 Query: 209 aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268 |||| |||||||| ||||| |||||||||||||| |||| |||| || ||| |||||| Sbjct: 713 aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 772 Query: 269 cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328 | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| | Sbjct: 773 cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 832 Query: 329 tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388 |||| ||||| ||||| || |||||||| || |||||||| |||||||||||||||||| Sbjct: 833 tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 891 Query: 389 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 892 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 951 Query: 449 aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508 |||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct: 952 aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 1011 Query: 509 aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568 ||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||||| || Sbjct: 1012 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 1070 Query: 569 tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1071 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 1119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 620 bits (313), Expect = e-174 Identities = 522/589 (88%), Gaps = 2/589 (0%) Strand = Plus / Minus Query: 29 ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88 ||||||| ||||||||||| |||||||| |||||||||| ||| |||| ||||| || | Sbjct: 40436363 ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 40436304 Query: 89 ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148 || || |||||||||||| | |||||| ||||||||||||||||| || || |||| Sbjct: 40436303 ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 40436244 Query: 149 ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208 |||||||||| ||||||||||| || ||||||||||||| || ||||||||||| ||| Sbjct: 40436243 ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 40436184 Query: 209 aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268 |||| |||||||| ||||| |||||||||||||| |||| |||| || ||| |||||| Sbjct: 40436183 aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 40436124 Query: 269 cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328 | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| | Sbjct: 40436123 cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 40436064 Query: 329 tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388 |||| ||||| ||||| || |||||||| || |||||||| |||||||||||||||||| Sbjct: 40436063 tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 40436005 Query: 389 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40436004 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 40435945 Query: 449 aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508 |||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct: 40435944 aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 40435885 Query: 509 aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568 ||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||||| || Sbjct: 40435884 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 40435826 Query: 569 tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 40435825 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 40435777
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 620 bits (313), Expect = e-174 Identities = 522/589 (88%), Gaps = 2/589 (0%) Strand = Plus / Minus Query: 29 ctaatgagggttacaaagtgatgtggttgcgaaatgatggaaatcatgaggtctacgact 88 ||||||| ||||||||||| |||||||| |||||||||| ||| |||| ||||| || | Sbjct: 87604 ctaatgaaggttacaaagtaatgtggttaggaaatgatgggaattatgaagtctatgatt 87545 Query: 89 ctctgcagaatatgtggtttcagccaggcgagtttcctccaagcatcaagctcccacttg 148 || || |||||||||||| | |||||| ||||||||||||||||| || || |||| Sbjct: 87544 ctatgaagaatatgtggtcttgtccaggcacttttcctccaagcatcaaacttccgcttg 87485 Query: 149 ctctaaatttcaggtcacagccagtcgcggttggcagcacactgtacttcatgtgctcag 208 |||||||||| ||||||||||| || ||||||||||||| || ||||||||||| ||| Sbjct: 87484 ctctaaattttaggtcacagcctgtggcggttggcagcatgctatacttcatgtgtgcag 87425 Query: 209 aacccgagggtgtgttgtcatatgatgtaagcaccgggacttggattcatttcatcatcc 268 |||| |||||||| ||||| |||||||||||||| |||| |||| || ||| |||||| Sbjct: 87424 aaccagagggtgttttgtcgtatgatgtaagcactgggatatggagacaattcgtcatcc 87365 Query: 269 cgctgccgctgcatctgactgaccacacacttgccgagttccaggggaagatcatgcttg 328 | ||||| || ||||||||||||||||||||||||||||||||||| | | | ||||| | Sbjct: 87364 cactgccacttcatctgactgaccacacacttgccgagttccagggaagggttatgctgg 87305 Query: 329 tgggcctgctgtgcaagaacgcagcgaccctgcgtctgcatctgggagttgcagaagatg 388 |||| ||||| ||||| || |||||||| || |||||||| |||||||||||||||||| Sbjct: 87304 tgggtctgctctgcaaaaatgcagcgaca-tgtgtctgcatttgggagttgcagaagatg 87246 Query: 389 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87245 actctcctctggaaggaggtggacagaatgccaaatatctggtgcttagaattctacggt 87186 Query: 449 aagcacatgaggatgacctgcctgggcaacagcggcttgctcatgctctccttgaaggcg 508 |||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct: 87185 aagcacatgaagatgacatgcctgggcaacagtggtttgctcatgctctccttgaaggcg 87126 Query: 509 aagcgaatgaaccgcctcgtgatgtacaacccttgtgagcaaggagtggcagaaggtacc 568 ||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||||| || Sbjct: 87125 aagcggatgaaccgcctcgtgacatacaa-ccttttgaacaaggagtggcagaaggttcc 87067 Query: 569 tgattgcatgctcccttgcagccgcaaaaagcagtggatagcatgtggc 617 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 87066 tgattgcatgctcccatgcagccgcaaaaagcagtggatagcatgtggc 87018
>gb|AY104147.1| Zea mays PCO106418 mRNA sequence Length = 1756 Score = 486 bits (245), Expect = e-134 Identities = 436/497 (87%), Gaps = 2/497 (0%) Strand = Plus / Plus Query: 121 tttcctccaagcatcaagctcccacttgctctaaatttcaggtcacagccagtcgcggtt 180 ||||||||||||||||| || ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 930 tttcctccaagcatcaaacttccacttgctctaaatttgaggtcacaaccagtggcggtt 989 Query: 181 ggcagcacactgtacttcatgtgctcagaacccgagggtgtgttgtcatatgatgtaagc 240 ||||||| | |||||||||||| ||||||| || ||||| |||||||||||||||||| Sbjct: 990 ggcagcatgatatacttcatgtgcgcagaaccagatggtgttttgtcatatgatgtaagc 1049 Query: 241 accgggacttggattcatttcatcatcccgctgccgctgcatctgactgaccacacactt 300 ||||||| ||||| || || |||||| ||||| |||||||||||||| ||||||||| Sbjct: 1050 accgggatttggaggcaatttgccatcccactgccactgcatctgactgatcacacactt 1109 Query: 301 gccgagttccaggggaagatcatgcttgtgggcctgctgtgcaagaacgcagcgaccctg 360 |||||||||||||| | | | ||||| ||||| ||||||||||| || ||||||||| || Sbjct: 1110 gccgagttccagggaagggttatgctggtgggtctgctgtgcaaaaatgcagcgacc-tg 1168 Query: 361 cgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatgcc 420 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1169 catctgcatatgggagttgcagaagatgactctcctctggaaggaggtggacagaatgcc 1228 Query: 421 aaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaacag 480 |||| ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1229 aaatctctggtgcttagagttctacggtaagcacatgaagatgaaatgcctgggcaacag 1288 Query: 481 cggcttgctcatgctctccttgaaggcgaagcgaatgaaccgcctcgtgatgtacaaccc 540 || |||||||||||||||||||||||||||| ||||||||||| || | ||||| || Sbjct: 1289 tggtttgctcatgctctccttgaaggcgaagcatatgaaccgccttgttacatacaa-cc 1347 Query: 541 ttgtgagcaaggagtggcagaaggtacctgattgcatgctcccttgcagccgcaaaaagc 600 || ||| | ||||||||||||||| |||||||||||||| || || || || |||| || Sbjct: 1348 ttttgaaaagggagtggcagaaggttcctgattgcatgctaccatggagtcgaaaaaggc 1407 Query: 601 agtggatagcatgtggc 617 | |||||| |||||||| Sbjct: 1408 aatggataacatgtggc 1424
>ref|NM_102496.3| Arabidopsis thaliana unknown protein AT1G27340 mRNA, complete cds Length = 1853 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 1329 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1388 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 1389 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1448 Query: 479 a 479 | Sbjct: 1449 a 1449
>gb|BT025325.1| Arabidopsis thaliana At1g27340 mRNA, complete cds Length = 1404 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 1108 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1167 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 1168 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1227 Query: 479 a 479 | Sbjct: 1228 a 1228
>emb|BX815904.1|CNS0ABSY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1618 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 1243 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1302 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 1303 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1362 Query: 479 a 479 | Sbjct: 1363 a 1363
>emb|BX816952.1|CNS0ABOV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH78ZD04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1763 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 1331 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1390 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 1391 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1450 Query: 479 a 479 | Sbjct: 1451 a 1451
>gb|AY085471.1| Arabidopsis thaliana clone 153013 mRNA, complete sequence Length = 1497 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 1189 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 1248 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 1249 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 1308 Query: 479 a 479 | Sbjct: 1309 a 1309
>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I, complete sequence Length = 99690 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 359 tgcgtctgcatctgggagttgcagaagatgactctcctctggaaggaggtggacagaatg 418 ||||| ||||| |||||| ||||||||||||| || | ||||||||||| ||||||||| Sbjct: 41446 tgcgtttgcatatgggagctgcagaagatgacactgttgtggaaggaggttgacagaatg 41505 Query: 419 ccaaatatctggtgcttagaattctacggtaagcacatgaggatgacctgcctgggcaac 478 ||||| || |||||||| || || ||||| |||||||| ||||||| || ||||||||| Sbjct: 41506 ccaaacatatggtgcttggagttttacggaaagcacattaggatgaattgtctgggcaac 41565 Query: 479 a 479 | Sbjct: 41566 a 41566
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 53889 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 400 gaaggaggtggacagaatgccaaa 423 |||||||||||||||||||||||| Sbjct: 7397 gaaggaggtggacagaatgccaaa 7420
>gb|AC134449.3| Mus musculus BAC clone RP24-213M16 from chromosome 3, complete sequence Length = 174678 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 13 ctgaatggaagagctcctaatga 35 ||||||||||||||||||||||| Sbjct: 3401 ctgaatggaagagctcctaatga 3379
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 aaggaggtggacagaatgccaaa 423 ||||||||||||||||||||||| Sbjct: 27166681 aaggaggtggacagaatgccaaa 27166659
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 402 aggaggtggacagaatgccaaatatct 428 |||||||||||||||||||||| |||| Sbjct: 25019 aggaggtggacagaatgccaaagatct 24993
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 aaggaggtggacagaatgccaaa 423 ||||||||||||||||||||||| Sbjct: 63130 aaggaggtggacagaatgccaaa 63108
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 aaggaggtggacagaatgccaaa 423 ||||||||||||||||||||||| Sbjct: 17352 aaggaggtggacagaatgccaaa 17330
>gb|AC145301.4| Mus musculus BAC clone RP24-68G17 from 3, complete sequence Length = 224101 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 13 ctgaatggaagagctcctaatga 35 ||||||||||||||||||||||| Sbjct: 51838 ctgaatggaagagctcctaatga 51860
>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence Length = 116075 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 ggaggtggacagaatgccaaa 423 ||||||||||||||||||||| Sbjct: 83076 ggaggtggacagaatgccaaa 83096
>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence Length = 163637 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tacttcatgtgctcagaacc 212 |||||||||||||||||||| Sbjct: 143512 tacttcatgtgctcagaacc 143493
>ref|XM_446204.1| Candida glabrata CBS138, CAGL0F05379g partial mRNA Length = 3072 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atggaaatcatgaggtctac 84 |||||||||||||||||||| Sbjct: 1328 atggaaatcatgaggtctac 1347
>ref|XM_800698.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508263.10) partial mRNA Length = 3009 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 catcatcccgctgccgctgcatct 284 |||||| ||||||||||||||||| Sbjct: 1924 catcatgccgctgccgctgcatct 1901
>gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete sequence Length = 112392 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tacttcatgtgctcagaacc 212 |||||||||||||||||||| Sbjct: 39817 tacttcatgtgctcagaacc 39798
>gb|AC004909.2| Homo sapiens PAC clone RP5-856O24 from 7, complete sequence Length = 132050 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 acttgctctaaatttcaggt 163 |||||||||||||||||||| Sbjct: 95960 acttgctctaaatttcaggt 95979
>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence Length = 119355 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 89596 ttggattcatttcatcatcc 89615
>gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete sequence Length = 145905 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 118302 ttggattcatttcatcatcc 118321 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 104920 ttggattcatttcatcatcc 104939 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 69471 ttggattcatttcatcatcc 69490
>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence Length = 131577 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 24120 ttggattcatttcatcatcc 24139 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttggattcatttcatcatcc 268 |||||||||||||||||||| Sbjct: 10739 ttggattcatttcatcatcc 10758
>gb|AC158961.3| Mus musculus chromosome 1, clone RP23-316E20, complete sequence Length = 202205 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ttgctctaaatttcaggtca 165 |||||||||||||||||||| Sbjct: 13998 ttgctctaaatttcaggtca 14017
>gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, complete sequence Length = 172709 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ccaggggaagatcatgcttg 328 |||||||||||||||||||| Sbjct: 44515 ccaggggaagatcatgcttg 44496
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 agggttacaaagtgatgtgg 54 |||||||||||||||||||| Sbjct: 2373654 agggttacaaagtgatgtgg 2373635
>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence Length = 927101 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 atggaaatcatgaggtctac 84 |||||||||||||||||||| Sbjct: 545835 atggaaatcatgaggtctac 545816
>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence Length = 196152 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 aagcaccgggacttggattcattt 260 ||||||| |||||||||||||||| Sbjct: 1645 aagcaccaggacttggattcattt 1622
>gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, complete sequence Length = 158806 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 aagcaccgggacttggattcattt 260 ||||||| |||||||||||||||| Sbjct: 25222 aagcaccaggacttggattcattt 25245
>emb|BX321868.13| Zebrafish DNA sequence from clone RP71-41I21, complete sequence Length = 135717 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gtgtgttgtcatatgatgtaagca 241 |||||||| ||||||||||||||| Sbjct: 3692 gtgtgttgacatatgatgtaagca 3715
>gb|AC104894.14| Mus musculus chromosome 1, clone RP23-290I22, complete sequence Length = 185038 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ttgctctaaatttcaggtca 165 |||||||||||||||||||| Sbjct: 95485 ttgctctaaatttcaggtca 95504 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,507,088 Number of Sequences: 3902068 Number of extensions: 5507088 Number of successful extensions: 96770 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96638 Number of HSP's gapped (non-prelim): 119 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)