>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 435 HNKYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 319
           H+ +HH  H Q H HQQ Q  +T  +  H  L   G S+
Sbjct: 307 HHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 225 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 395
           +EKK    +  K++ E+T +++   SKA  +  T P+ S +GA     + QA+ + A
Sbjct: 98  KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151

>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
           (Chromosome-associated protein E) (Chromosome assembly
           protein XCAP-E)
          Length = 1203

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
 Frame = +3

Query: 120 RKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGK-KQTVETTADDTEG 296
           + R Q  G  +++  E     +R            ++  KA R  K K+ V++  +D   
Sbjct: 286 KMRDQEVGGALRSLEEALSEAQRADTKVQSALDLKKQNMKAEREKKRKELVKSMEED--- 342

Query: 297 TSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEEYGDICCGWRNKSIGK 461
            +K   +K     +  DG S LQE SQ + V+A  +A + +  +  G  +   G+
Sbjct: 343 -AKVLTAKEKEVKKITDGLSSLQEASQKD-VEAFTSAQQHFNAVSAGLSSNEDGE 395

>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)|
          Length = 1061

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/103 (21%), Positives = 42/103 (40%)
 Frame = +3

Query: 108 GGQPRKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGKKQTVETTADD 287
           GG+  K  +   P  +   E++ + R+           PR+     RR + +  +T ++ 
Sbjct: 584 GGEETKPTEQPAPKAEAKPERQQDRRK-----------PRQNN---RRDRNERRDTRSER 629

Query: 288 TEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEE 416
           TEG+    +++R         A   +   QAE  +   TA E+
Sbjct: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672

>ARP8_SCHPO (Q9US07) Probable actin-related protein 8|
          Length = 620

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 398
           G+K   ET ++   G +K  DSK++   E  DG   S+L E    +T+  H
Sbjct: 9   GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 508 NYYSSSCYVVKKDHSVFPIDL 446
           NY   +CY    DH+ FPID+
Sbjct: 271 NYIYGTCYYTASDHTAFPIDI 291

>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular|
            weight form of myosin I) (HMWMI)
          Length = 1577

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 279  ADDTEGTSKAAD---SKRTGPSESADGASQLQEFSQAETVDAHATAGEEYG 422
            ADDTEG  +A       R  P + A  A   ++ + A    A ATA  +YG
Sbjct: 1431 ADDTEGVIRAGSRPAQARAQPGQQAQPAGAARQQAAAPVQAAAATASYDYG 1481

>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth|
           arrest-specific homeobox)
          Length = 304

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 435 HNKYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSSCYQQL 304
           H  +HH  H   H H Q Q  + L T  H   +   PS+    L
Sbjct: 65  HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSL 108

>RPA8_SCHPO (Q9P7P1) DNA-directed RNA polymerase I 17 kDa polypeptide (EC|
           2.7.7.6) (A14) (Nucleolar protein ker1)
          Length = 147

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 225 REKKKAVRRGKKQTVETTADDTEGTSKAADS 317
           +EKKKA RR K++  +  AD T+G  +   S
Sbjct: 117 KEKKKAARREKEEARKAKADTTQGVGEKEQS 147

>AFAD_RAT (O35889) Afadin (Af-6 protein)|
          Length = 1829

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = +3

Query: 117 PRKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGKKQTVETTADDTEG 296
           P K+ Q +GP  Q       N +R            REK+   +   K+   +  DD+E 
Sbjct: 136 PAKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQASDKEERPSQGDDSEN 195

Query: 297 TSKAADSKRTGPSES 341
           +  AA+  +  P  S
Sbjct: 196 SRLAAEVYKDMPETS 210

>SOX8_MOUSE (Q04886) Transcription factor SOX-8|
          Length = 464

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 514 RCNYYSSSCYVVKKDHSVFPIDLFRHPQQIS---PYSSPAVAWASTVSAWENSCNWDAP 347
           +C+Y           +  +P  L+++P   S   PY+SP +   S   A   S NWD P
Sbjct: 398 QCDYTDLQASNYYSPYPGYPPSLYQYPYFHSSRRPYASPLLNGLSMPPAHSPSSNWDQP 456

>PVDA_PLAKN (P22545) Duffy receptor alpha form precursor (Erythrocyte-binding|
           protein)
          Length = 1073

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +3

Query: 219 PPREK---KKAVRRGKKQTVET-TADDTEGT----SKAADSKRTGPSESADGASQLQEFS 374
           PP E    + AV     +T  T T ++ EGT    +   D K  GP+ S+D  S   + S
Sbjct: 601 PPAEAAATESAVLHSADKTPNTVTEENKEGTQMDGAAGGDGKAPGPTVSSDVPSVGGKDS 660

Query: 375 QAETVDAHATAGE 413
              T  +HA AGE
Sbjct: 661 GPSTSASHALAGE 673

>PININ_BOVIN (P79122) Pinin|
          Length = 703

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
 Frame = +3

Query: 108 GGQPRKRRQPSGPLMQTTGEK--RYNLRRXXXXXXXXXXPPREKKKAVRRGKKQTVETTA 281
           GG P K+R   G + +  GE+  R   R+           P  +   V   K+++ E   
Sbjct: 70  GGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATSKERSTERPL 129

Query: 282 DDTEGTSKAADSKRTGPSESADGASQLQEFSQAETV 389
              + T +    +R GP         LQ+F Q  TV
Sbjct: 130 FQDQNTDEKETPERPGPIFGL-LMGTLQKFKQESTV 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,115,044
Number of Sequences: 219361
Number of extensions: 1234002
Number of successful extensions: 4058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4039
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)