ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467417.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for ... 82 2e-12
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5gb|AY107338.1| Zea mays PCO113049 mRNA sequence 56 1e-04
6gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, compl... 44 0.45
7gb|AE010141.1| Pyrococcus furiosus DSM 3638, section 16 of 173 o... 44 0.45
8emb|CT967308.1| Human DNA sequence from clone XXyac-830B11 on ch... 44 0.45
9dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complet... 44 0.45
10ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein... 42 1.8
11ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative... 42 1.8
12gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
13ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coup... 42 1.8
14gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, comple... 42 1.8
15ref|XM_761577.1| Theileria parva strain Muguga chromosome 1 hypo... 42 1.8
16gb|AF455756.1| Mus musculus tenascin-N (Tnn) mRNA, complete cds 42 1.8
17gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (G... 42 1.8
18gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 42 1.8
19dbj|AK048033.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.8
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRN... 42 1.8
22gb|AC007338.6| Homo sapiens chromosome 16 clone RP11-283C7, comp... 42 1.8
23gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosom... 42 1.8
24ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GP... 42 1.8
25ref|NM_177839.2| Mus musculus tenascin N (Tnn), mRNA 42 1.8
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
27emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on ch... 42 1.8
28dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix ... 42 1.8
29ref|NM_152818.2| Mus musculus oxysterol binding protein 2 (Osbp2... 40 7.0
30gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, co... 40 7.0
31ref|NM_001001876.1| Gallus gallus basement membrane-specific hep... 40 7.0
32gb|BC058602.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 7.0
33gb|BC031794.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 7.0
34gb|U42894.1|USU42894 Unidentified soil organism R6-45 16S rRNA g... 40 7.0
35ref|XM_618841.3| PREDICTED: Mus musculus oxysterol binding prote... 40 7.0
36ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM064... 40 7.0
37ref|XM_748689.1| Aspergillus fumigatus Af293 Rho guanyl nucleoti... 40 7.0
38ref|XM_862851.1| PREDICTED: Canis familiaris similar to Rap guan... 40 7.0
39ref|XM_862846.1| PREDICTED: Canis familiaris similar to Rap guan... 40 7.0
40ref|XM_862840.1| PREDICTED: Canis familiaris similar to Rap guan... 40 7.0
41ref|XM_539787.2| PREDICTED: Canis familiaris similar to Rap guan... 40 7.0
42ref|XM_848711.1| PREDICTED: Canis familiaris similar to Rap guan... 40 7.0
43gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, com... 40 7.0
44gb|BC058356.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 7.0
45gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, co... 40 7.0
46gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete seq... 40 7.0
47gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosom... 40 7.0
48emb|AL353624.8| Human DNA sequence from clone RP1-243N19 on chro... 40 7.0
49emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21... 40 7.0
50gb|DQ129290.1| Uncultured bacterium clone AKIW700 16S ribosomal ... 40 7.0
51gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 40 7.0
52gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Ca... 40 7.0
53emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chro... 40 7.0
54emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specifi... 40 7.0
55emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in... 40 7.0
56gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, co... 40 7.0
57dbj|AK044598.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 7.0
58gb|BC051185.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 7.0
59dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
60dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
61gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occlu... 40 7.0
62gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, co... 40 7.0
63dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
64gb|AE016754.1| Mus musculus chromosome 10 high-growth region, se... 40 7.0
65dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
66dbj|AB019231.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.0
67dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
68gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, compl... 40 7.0
69emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in... 40 7.0
70emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in... 40 7.0
71gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 1... 40 7.0
72emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chr... 40 7.0 
>ref|XM_467417.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3468

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 96/111 (86%), Gaps = 5/111 (4%)
 Strand = Plus / Plus

                                                                        
Query: 8    agttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagtgaggaag 66
            ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||||| |||
Sbjct: 2889 agttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagtgagcaag 2947

                                                               
Query: 67   atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 117
            |||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 2948 atgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 2995



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 439  ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacat 486
            |||| ||| |||| |||||||||| |||||||||||||||||| ||||
Sbjct: 3419 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacat 3466



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 160  caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 205
            |||| ||||||||||||||  | || ||||| ||||||||||||||
Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 261  cagacggtagaaactaccgctgatgacacggaaggaacctc 301
            ||||| |||||  ||||||| |||||||| |||||||||||
Sbjct: 3136 cagacagtagaggctaccgcagatgacacagaaggaacctc 3176
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>dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
            complete cds, contig of clone: OsNMCP1aSE2Nco-5 and
            12FPG031
          Length = 3708

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 96/111 (86%), Gaps = 5/111 (4%)
 Strand = Plus / Plus

                                                                        
Query: 8    agttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagtgaggaag 66
            ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||||| |||
Sbjct: 2889 agttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagtgagcaag 2947

                                                               
Query: 67   atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 117
            |||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 2948 atgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 2995



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 439  ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 491
            |||| ||| |||| |||||||||| |||||||||||||||||| |||| ||||
Sbjct: 3419 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 3471



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 160  caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 205
            |||| ||||||||||||||  | || ||||| ||||||||||||||
Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 261  cagacggtagaaactaccgctgatgacacggaaggaacctc 301
            ||||| |||||  ||||||| |||||||| |||||||||||
Sbjct: 3136 cagacagtagaggctaccgcagatgacacagaaggaacctc 3176
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 96/111 (86%), Gaps = 5/111 (4%)
 Strand = Plus / Minus

                                                                            
Query: 8        agttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagtgaggaag 66
                ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||||| |||
Sbjct: 29402051 agttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagtgagcaag 29401993

                                                                   
Query: 67       atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 117
                |||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 29401992 atgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 29401945



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 439      ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 491
                |||| ||| |||| |||||||||| |||||||||||||||||| |||| ||||
Sbjct: 29401244 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 29401192



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 261      cagacggtagaaactaccgctgatgacacggaaggaacctc 301
                ||||| |||||  ||||||| |||||||| |||||||||||
Sbjct: 29401694 cagacagtagaggctaccgcagatgacacagaaggaacctc 29401654
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_H06
          Length = 139868

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 96/111 (86%), Gaps = 5/111 (4%)
 Strand = Plus / Minus

                                                                         
Query: 8     agttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagtgaggaag 66
             ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||||| |||
Sbjct: 52923 agttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagtgagcaag 52865

                                                                
Query: 67    atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 117
             |||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 52864 atgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 52817



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 439   ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 491
             |||| ||| |||| |||||||||| |||||||||||||||||| |||| ||||
Sbjct: 52116 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 52064



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 261   cagacggtagaaactaccgctgatgacacggaaggaacctc 301
             ||||| |||||  ||||||| |||||||| |||||||||||
Sbjct: 52566 cagacagtagaggctaccgcagatgacacagaaggaacctc 52526
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>gb|AY107338.1| Zea mays PCO113049 mRNA sequence
          Length = 866

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 350 tgcatcccagttgcaagagttctcccaggctgaaactgttgatgcccatgct 401
           ||||||||||||||| ||||| ||||||| ||||  || |||||||||||||
Sbjct: 284 tgcatcccagttgcatgagttttcccaggttgaagttggtgatgcccatgct 335



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 93  gaaagtgtttcagttggcgggcagcctcgtaagaggaggca 133
           |||||||||||| |||| |||||||  ||||||||| ||||
Sbjct: 15  gaaagtgtttcacttggagggcagcgccgtaagaggcggca 55
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>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome
          Length = 149705

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 434   tggatggcgaaacaaatcgattggga 459
             ||||||||||||||||| ||||||||
Sbjct: 53864 tggatggcgaaacaaattgattggga 53889
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>gb|AE010141.1| Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete
            genome
          Length = 12352

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 56   cagtgaggaagatgaagaagtt 77
            ||||||||||||||||||||||
Sbjct: 1866 cagtgaggaagatgaagaagtt 1887
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>emb|CT967308.1| Human DNA sequence from clone XXyac-830B11 on chromosome 6, complete
            sequence
          Length = 31833

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 241  ctgtgaggagaggaaaaaagca 262
            ||||||||||||||||||||||
Sbjct: 5110 ctgtgaggagaggaaaaaagca 5089
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>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D
          Length = 149987

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 434   tggatggcgaaacaaatcgattggga 459
             ||||||||||||||||| ||||||||
Sbjct: 11515 tggatggcgaaacaaattgattggga 11490
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>ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein-coupled receptor 144;
            G-protein coupled receptor GPR144 (LOC473059), mRNA
          Length = 3456

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  ccacagcagcagcccctccac 225
            |||||||||||||||||||||
Sbjct: 2877 ccacagcagcagcccctccac 2857
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>ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein
            (OSJNBb0038H12.4), mRNA
          Length = 2283

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  cagttgcaaatgccacagcag 213
            |||||||||||||||||||||
Sbjct: 2243 cagttgcaaatgccacagcag 2263
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   cagttgcaaatgccacagcag 213
             |||||||||||||||||||||
Sbjct: 14896 cagttgcaaatgccacagcag 14916
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>ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coupled receptor 144
           (LOC517106), mRNA
          Length = 1776

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 205 ccacagcagcagcccctccac 225
           |||||||||||||||||||||
Sbjct: 951 ccacagcagcagcccctccac 931
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>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence
          Length = 213229

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   atgccacagcagcagcccctc 222
             |||||||||||||||||||||
Sbjct: 37208 atgccacagcagcagcccctc 37188
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>ref|XM_761577.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_1149) partial mRNA
          Length = 3339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 56   cagtgaggaagatgaagaagttagt 80
            |||||| ||||||||||||||||||
Sbjct: 2211 cagtgaagaagatgaagaagttagt 2235
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>gb|AF455756.1| Mus musculus tenascin-N (Tnn) mRNA, complete cds
          Length = 5773

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 282  gatgacacggaaggaacctctaaag 306
            ||||||| |||||||||||||||||
Sbjct: 4955 gatgacatggaaggaacctctaaag 4931
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>gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (GPR144) mRNA,
            complete cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  ccacagcagcagcccctccac 225
            |||||||||||||||||||||
Sbjct: 2241 ccacagcagcagcccctccac 2221
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>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 282   gatgacacggaaggaacctctaaag 306
             ||||||| |||||||||||||||||
Sbjct: 80460 gatgacatggaaggaacctctaaag 80484
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>dbj|AK048033.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130031C11 product:hypothetical Fibrinogen
            beta and gamma chains C-terminal globular domain
            containing protein, full insert sequence
          Length = 3343

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 282  gatgacacggaaggaacctctaaag 306
            ||||||| |||||||||||||||||
Sbjct: 3104 gatgacatggaaggaacctctaaag 3080
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 193     cagttgcaaatgccacagcag 213
               |||||||||||||||||||||
Sbjct: 5908987 cagttgcaaatgccacagcag 5908967
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>gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRNA, partial cds
          Length = 837

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 205 ccacagcagcagcccctccac 225
           |||||||||||||||||||||
Sbjct: 387 ccacagcagcagcccctccac 367
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>gb|AC007338.6| Homo sapiens chromosome 16 clone RP11-283C7, complete sequence
          Length = 185281

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 412   aggagtatggtgatatttgtt 432
             |||||||||||||||||||||
Sbjct: 45632 aggagtatggtgatatttgtt 45652
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>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence
          Length = 178299

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 496    aagaataataattgcatctga 516
              |||||||||||||||||||||
Sbjct: 108094 aagaataataattgcatctga 108114
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>ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GPR144), mRNA
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  ccacagcagcagcccctccac 225
            |||||||||||||||||||||
Sbjct: 2241 ccacagcagcagcccctccac 2221
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>ref|NM_177839.2| Mus musculus tenascin N (Tnn), mRNA
          Length = 5773

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 282  gatgacacggaaggaacctctaaag 306
            ||||||| |||||||||||||||||
Sbjct: 4955 gatgacatggaaggaacctctaaag 4931
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 193     cagttgcaaatgccacagcag 213
               |||||||||||||||||||||
Sbjct: 5910173 cagttgcaaatgccacagcag 5910153
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>emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on chromosome 9, complete
              sequence
          Length = 162839

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 205    ccacagcagcagcccctccac 225
              |||||||||||||||||||||
Sbjct: 142785 ccacagcagcagcccctccac 142765
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>dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix receptor, complete
            cds, isolate:CBRC7TM_164
          Length = 18512

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  ccacagcagcagcccctccac 225
            |||||||||||||||||||||
Sbjct: 3582 ccacagcagcagcccctccac 3562
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>ref|NM_152818.2| Mus musculus oxysterol binding protein 2 (Osbp2), mRNA
          Length = 4138

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 50   agagatcagtgaggaagatgaaga 73
            ||||| ||||||||||||||||||
Sbjct: 1353 agagaacagtgaggaagatgaaga 1376
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>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence
          Length = 192019

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   cgtaagaggaggcagccatc 139
             ||||||||||||||||||||
Sbjct: 98166 cgtaagaggaggcagccatc 98185
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>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan
             core protein (HSPG), mRNA
          Length = 12255

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgccacagcagcagcccctc 222
             ||||||||||||||||||||
Sbjct: 11795 tgccacagcagcagcccctc 11776
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>gb|BC058602.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:65555 IMAGE:6467653), complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  agagatcagtgaggaagatgaaga 73
           ||||| ||||||||||||||||||
Sbjct: 316 agagaacagtgaggaagatgaaga 339
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>gb|BC031794.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:25110 IMAGE:4501119), complete cds
          Length = 3123

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  agagatcagtgaggaagatgaaga 73
           ||||| ||||||||||||||||||
Sbjct: 316 agagaacagtgaggaagatgaaga 339
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>gb|U42894.1|USU42894 Unidentified soil organism R6-45 16S rRNA gene, partial sequence
          Length = 270

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cctcgtaagaggaggcagcc 136
           ||||||||||||||||||||
Sbjct: 204 cctcgtaagaggaggcagcc 223
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>ref|XM_618841.3| PREDICTED: Mus musculus oxysterol binding protein 2, transcript
            variant 2 (Osbp2), mRNA
          Length = 3646

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 50   agagatcagtgaggaagatgaaga 73
            ||||| ||||||||||||||||||
Sbjct: 1347 agagaacagtgaggaagatgaaga 1370
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>ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM06461.1) partial mRNA
          Length = 4149

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 gcaaatgccacagcagcagc 217
           ||||||||||||||||||||
Sbjct: 755 gcaaatgccacagcagcagc 736
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>ref|XM_748689.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor
           (Afu5g08550) partial mRNA
          Length = 3600

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 aggaggcagccatctggccc 145
           ||||||||||||||||||||
Sbjct: 706 aggaggcagccatctggccc 725
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>ref|XM_862851.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 5 (LOC482670), mRNA
          Length = 6850

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gggagaagaagaaagctgtgagga 249
            ||||| ||||||||||||||||||
Sbjct: 3651 gggaggagaagaaagctgtgagga 3628
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>ref|XM_862846.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 4 (LOC482670), mRNA
          Length = 7066

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gggagaagaagaaagctgtgagga 249
            ||||| ||||||||||||||||||
Sbjct: 3870 gggaggagaagaaagctgtgagga 3847
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>ref|XM_862840.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 3 (LOC482670), mRNA
          Length = 7042

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gggagaagaagaaagctgtgagga 249
            ||||| ||||||||||||||||||
Sbjct: 3846 gggaggagaagaaagctgtgagga 3823
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>ref|XM_539787.2| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 1 (LOC482670), mRNA
          Length = 7048

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gggagaagaagaaagctgtgagga 249
            ||||| ||||||||||||||||||
Sbjct: 3858 gggaggagaagaaagctgtgagga 3835
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>ref|XM_848711.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 2 (LOC482670), mRNA
          Length = 7081

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gggagaagaagaaagctgtgagga 249
            ||||| ||||||||||||||||||
Sbjct: 3882 gggaggagaagaaagctgtgagga 3859
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>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence
          Length = 195511

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 483    acataacaagaggaagaata 502
              ||||||||||||||||||||
Sbjct: 147294 acataacaagaggaagaata 147313
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>gb|BC058356.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:66677 IMAGE:5696357), complete cds
          Length = 3281

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  agagatcagtgaggaagatgaaga 73
           ||||| ||||||||||||||||||
Sbjct: 496 agagaacagtgaggaagatgaaga 519
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>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence
          Length = 211926

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgccacagcagcagcccctc 222
             ||||||||||||||||||||
Sbjct: 56574 tgccacagcagcagcccctc 56555
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>gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete sequence
          Length = 116833

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    gaagatgaagaagttagtga 82
             ||||||||||||||||||||
Sbjct: 72633 gaagatgaagaagttagtga 72614
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>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence
          Length = 191274

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ctgtgaggagaggaaaaaag 260
             ||||||||||||||||||||
Sbjct: 49082 ctgtgaggagaggaaaaaag 49101
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>emb|AL353624.8| Human DNA sequence from clone RP1-243N19 on chromosome 6, complete
             sequence
          Length = 23424

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   ggtgaggagtatggtgatat 427
             ||||||||||||||||||||
Sbjct: 17732 ggtgaggagtatggtgatat 17751
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>emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21 on chromosome 6q23.1-23.3
             Contains two novels genes, complete sequence
          Length = 146831

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   aataataattgcatctgatt 518
             ||||||||||||||||||||
Sbjct: 60231 aataataattgcatctgatt 60250
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>gb|DQ129290.1| Uncultured bacterium clone AKIW700 16S ribosomal RNA gene, partial
            sequence
          Length = 1420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  cctcgtaagaggaggcagcc 136
            ||||||||||||||||||||
Sbjct: 1387 cctcgtaagaggaggcagcc 1406
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>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence
          Length = 226160

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ctgtgaggagaggaaaaaag 260
              ||||||||||||||||||||
Sbjct: 211055 ctgtgaggagaggaaaaaag 211074
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>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 226172

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cagtgaggaagatgaagaag 75
             ||||||||||||||||||||
Sbjct: 90653 cagtgaggaagatgaagaag 90672
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>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains
            the 5' end of the Osbp2 gene for oxysterol binding
            protein 2, a novel pseudogene, two novel genes, the
            Dusp18 gene for dual specificity phosphatase 18 and five
            CpG islands, complete sequence
          Length = 205509

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 50   agagatcagtgaggaagatgaaga 73
            ||||| ||||||||||||||||||
Sbjct: 8199 agagaacagtgaggaagatgaaga 8176
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>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate
             proteoglycan core protein precursor (HSPG gene)
          Length = 12255

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgccacagcagcagcccctc 222
             ||||||||||||||||||||
Sbjct: 11795 tgccacagcagcagcccctc 11776
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>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7,
             complete sequence
          Length = 163069

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   cacaggtgaaaaacgctacaattt 181
             ||||||||||||||| ||||||||
Sbjct: 94689 cacaggtgaaaaacgatacaattt 94666
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>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence
          Length = 188117

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   gaagaataataattgcatct 514
             ||||||||||||||||||||
Sbjct: 98048 gaagaataataattgcatct 98067
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>dbj|AK044598.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930026E05 product:oxysterol binding protein 2,
           full insert sequence
          Length = 2701

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  agagatcagtgaggaagatgaaga 73
           ||||| ||||||||||||||||||
Sbjct: 141 agagaacagtgaggaagatgaaga 164
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>gb|BC051185.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           IMAGE:6467654), containing frame-shift errors
          Length = 1810

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  agagatcagtgaggaagatgaaga 73
           ||||| ||||||||||||||||||
Sbjct: 312 agagaacagtgaggaagatgaaga 335
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 332      ctctgaatcagctgatggtg 351
                ||||||||||||||||||||
Sbjct: 19319522 ctctgaatcagctgatggtg 19319503
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 80      tgaagcacaatctgaaagtg 99
               ||||||||||||||||||||
Sbjct: 4434455 tgaagcacaatctgaaagtg 4434436
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>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene,
             complete cds
          Length = 125625

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   gaagaataataattgcatct 514
             ||||||||||||||||||||
Sbjct: 81254 gaagaataataattgcatct 81235
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>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence
          Length = 166871

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    gggagaagaagaaagctgtg 245
              ||||||||||||||||||||
Sbjct: 102883 gggagaagaagaaagctgtg 102902
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>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0489A01
          Length = 137174

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tgaagcacaatctgaaagtg 99
             ||||||||||||||||||||
Sbjct: 94537 tgaagcacaatctgaaagtg 94518
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>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the
              complete sequence
          Length = 303688

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cagtgaggaagatgaagaag 75
              ||||||||||||||||||||
Sbjct: 206065 cagtgaggaagatgaagaag 206046
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>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0438E12
          Length = 146851

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   ctctgaatcagctgatggtg 351
             ||||||||||||||||||||
Sbjct: 24295 ctctgaatcagctgatggtg 24276
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>dbj|AB019231.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3
          Length = 43570

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   gaggagaggaaaaaagcaga 264
             ||||||||||||||||||||
Sbjct: 25007 gaggagaggaaaaaagcaga 24988
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>dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115A04, full
            insert sequence
          Length = 1679

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  ctctgaatcagctgatggtg 351
            ||||||||||||||||||||
Sbjct: 1034 ctctgaatcagctgatggtg 1015
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>gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    ttctcccaggctgaaactgttgat 392
              ||||| ||||||||||||||||||
Sbjct: 125525 ttctctcaggctgaaactgttgat 125548
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>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7,
             complete sequence
          Length = 190715

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   cacaggtgaaaaacgctacaattt 181
             ||||||||||||||| ||||||||
Sbjct: 94816 cacaggtgaaaaacgatacaattt 94839
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>emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in linkage group 20,
             complete sequence
          Length = 160555

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ggagaagaagaaagctgtga 246
             ||||||||||||||||||||
Sbjct: 13494 ggagaagaagaaagctgtga 13475
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>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence
          Length = 207280

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    tgccacagcagcagcccctc 222
              ||||||||||||||||||||
Sbjct: 158805 tgccacagcagcagcccctc 158786
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>emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chromosome 4, complete
             sequence
          Length = 87103

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   gaagaaagctgtgaggagaggaaa 256
             |||||||||||| |||||||||||
Sbjct: 72688 gaagaaagctgtcaggagaggaaa 72711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,412,826
Number of Sequences: 3902068
Number of extensions: 5412826
Number of successful extensions: 121078
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120718
Number of HSP's gapped (non-prelim): 356
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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