ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y46K_DROME (P53404) Hypothetical protein CG10349 in chromosome 3 30 4.0
2LCTP_BACSU (P55910) L-lactate permease 30 4.0

>Y46K_DROME (P53404) Hypothetical protein CG10349 in chromosome 3|
          Length = 404

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 24  MQNHILQQNSMQFNPPKLHQQMKPINDLSNAALPLN-QLGAIRN 152
           M+     ++S+ F PP  +QQM  +N    AA+P++ QL  IRN
Sbjct: 1   MEEQSPPRDSLLFGPPTEYQQMPKVNLFRVAAIPVDVQLQRIRN 44



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>LCTP_BACSU (P55910) L-lactate permease|
          Length = 541

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 12  RQLYMQNHILQQNSMQFNPPKLHQQMKPINDLSNAALPLN 131
           + L+ +  +L Q+++ F  P LHQQ+  +  ++ +A+PL+
Sbjct: 315 KALFQEGGLLYQSTLLFKMPFLHQQIMKMPPIAPSAMPLD 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,705,523
Number of Sequences: 219361
Number of extensions: 813066
Number of successful extensions: 1485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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