ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3m16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 143 8e-31
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
3gb|AC102603.11| Mus musculus chromosome 14, clone RP23-385I17, c... 44 0.52
4gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.52
5gb|BT010229.1| Drosophila melanogaster RE64695 full insert cDNA 44 0.52
6gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell... 44 0.52
7gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswel... 44 0.52
8gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell ... 44 0.52
9ref|NM_139931.2| Drosophila melanogaster CG8005-RA (CG8005), mRNA 44 0.52
10ref|NM_132224.1| Drosophila melanogaster G5 CG10763-RA (Gbeta5),... 44 0.52
11gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 44 0.52
12gb|BT004841.1| Drosophila melanogaster RH17413 full insert cDNA 44 0.52
13gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29... 44 0.52
14gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 44 0.52
15gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.52
16gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosom... 44 0.52
17gb|AC167421.2| Mus musculus BAC clone RP23-143K19 from chromosom... 42 2.1
18gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, co... 42 2.1
19ref|XM_988518.1| PREDICTED: Mus musculus hypothetical protein LO... 42 2.1
20ref|XM_988194.1| PREDICTED: Mus musculus hypothetical protein LO... 42 2.1
21ref|XM_898427.2| PREDICTED: Mus musculus hypothetical LOC624685 ... 42 2.1
22dbj|AK154950.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.1
23dbj|AK039704.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 42 2.1
24emb|AL772228.5| Mouse DNA sequence from clone RP23-236D1 on chro... 42 2.1
25gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 40 8.2
26emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 i... 40 8.2
27emb|AL035700.13|HS75K24 Human DNA sequence from clone RP1-75K24 ... 40 8.2
28emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 8.2
29emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in... 40 8.2
30dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
31gb|AC003029.5| Homo sapiens 12 PAC RP3-462E2 (Roswell Park Cance... 40 8.2
32gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Canc... 40 8.2
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.2
34emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in ... 40 8.2
35dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
36gb|AE005127.1| Halobacterium sp. NRC-1 section 158 of 170 of the... 40 8.2
37dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene clust... 40 8.2 
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
              complete sequence
          Length = 146712

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                          
Query: 43     ccatgacggcgaatcagccggcgggcgaggccctcgcgacccacatctccggcatgtccc 102
              ||||| ||||||| |||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct: 116336 ccatggcggcgaaccagccggcgggcgaggccctcgcggccaacatctccgccatgtccc 116395

                                                  
Query: 103    gcccggagatgcacgacctcatgtcccagatgaagg 138
              ||||||||||| ||||||||||||||||||||||||
Sbjct: 116396 gcccggagatgtacgacctcatgtcccagatgaagg 116431



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 381    caaccttctggccaatttccatcgggctcttctaatgtgacatcgtctttggaccttcca 440
              ||||||||||||| |||| |||| ||  | ||||||  | |||||||||||||||| |||
Sbjct: 117691 caaccttctggcccattttcatctggtccgtctaatccggcatcgtctttggacctccca 117750

                                                                          
Query: 441    cctatgccagcaaatccaccacaatcagcacaatcaaaaggataccctatccatcagatg 500
               ||||| |||||||||||| ||||||||||||| | ||||| || ||||||||||| |||
Sbjct: 117751 gctatgtcagcaaatccacaacaatcagcacaagcgaaaggttatcctatccatcaaatg 117810

                                                                          
Query: 501    cattccgcatcagcaccgcagtcatctcagtatccaaatgttaccatgcctcctcatgct 560
              | | || ||||| || | ||| |||| ||| ||| || || |||| | |||||||||| |
Sbjct: 117811 cctcccacatcaacaactcagacatcccagcatcaaagtgctaccctacctcctcatgtt 117870

                                                   
Query: 561    cctccacagtattcaaatgttccatctcatatgccaa 597
               |  |||||||||||||| ||||||| ||||||||||
Sbjct: 117871 tcatcacagtattcaaatattccatcacatatgccaa 117907



 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                          
Query: 140    catgatcgaccacgaccaggagagggtgcgccgaatgctcgtcgagaaccccgacgtcac 199
              ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 116565 catgatcgaccacgaccaggagagggtgcgccggatgctcgtcgacaacccggacgtcac 116624

                               
Query: 200    ccgcgcgctcttccggg 216
              |||||| ||||||||||
Sbjct: 116625 ccgcgctctcttccggg 116641
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                            
Query: 43       ccatgacggcgaatcagccggcgggcgaggccctcgcgacccacatctccggcatgtccc 102
                ||||| ||||||| |||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct: 25253495 ccatggcggcgaaccagccggcgggcgaggccctcgcggccaacatctccgccatgtccc 25253554

                                                    
Query: 103      gcccggagatgcacgacctcatgtcccagatgaagg 138
                ||||||||||| ||||||||||||||||||||||||
Sbjct: 25253555 gcccggagatgtacgacctcatgtcccagatgaagg 25253590



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 381      caaccttctggccaatttccatcgggctcttctaatgtgacatcgtctttggaccttcca 440
                ||||||||||||| |||| |||| ||  | ||||||  | |||||||||||||||| |||
Sbjct: 25254850 caaccttctggcccattttcatctggtccgtctaatccggcatcgtctttggacctccca 25254909

                                                                            
Query: 441      cctatgccagcaaatccaccacaatcagcacaatcaaaaggataccctatccatcagatg 500
                 ||||| |||||||||||| ||||||||||||| | ||||| || ||||||||||| |||
Sbjct: 25254910 gctatgtcagcaaatccacaacaatcagcacaagcgaaaggttatcctatccatcaaatg 25254969

                                                                            
Query: 501      cattccgcatcagcaccgcagtcatctcagtatccaaatgttaccatgcctcctcatgct 560
                | | || ||||| || | ||| |||| ||| ||| || || |||| | |||||||||| |
Sbjct: 25254970 cctcccacatcaacaactcagacatcccagcatcaaagtgctaccctacctcctcatgtt 25255029

                                                     
Query: 561      cctccacagtattcaaatgttccatctcatatgccaa 597
                 |  |||||||||||||| ||||||| ||||||||||
Sbjct: 25255030 tcatcacagtattcaaatattccatcacatatgccaa 25255066



 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                            
Query: 140      catgatcgaccacgaccaggagagggtgcgccgaatgctcgtcgagaaccccgacgtcac 199
                ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 25253724 catgatcgaccacgaccaggagagggtgcgccggatgctcgtcgacaacccggacgtcac 25253783

                                 
Query: 200      ccgcgcgctcttccggg 216
                |||||| ||||||||||
Sbjct: 25253784 ccgcgctctcttccggg 25253800
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>gb|AC102603.11| Mus musculus chromosome 14, clone RP23-385I17, complete sequence
          Length = 204565

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 377    tttgcaaccttctggccaatttccat 402
              |||||||||||||||||| |||||||
Sbjct: 167419 tttgcaaccttctggccagtttccat 167394
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 182     cgagaaccccgacgtcacccgcgcgc 207
               |||||||||||||| |||||||||||
Sbjct: 3212667 cgagaaccccgacgacacccgcgcgc 3212692
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>gb|BT010229.1| Drosophila melanogaster RE64695 full insert cDNA
          Length = 1242

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 366 aatcaacagaatttgcaaccttctgg 391
           ||||||||||||| ||||||||||||
Sbjct: 554 aatcaacagaattggcaaccttctgg 579
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>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185790

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 366   aatcaacagaatttgcaaccttctgg 391
             ||||||||||||| ||||||||||||
Sbjct: 20173 aatcaacagaattggcaaccttctgg 20148
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>gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 165014

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 122   catgtcccagatgaaggccatg 143
             ||||||||||||||||||||||
Sbjct: 41162 catgtcccagatgaaggccatg 41183
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>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187555

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 366   aatcaacagaatttgcaaccttctgg 391
             ||||||||||||| ||||||||||||
Sbjct: 74778 aatcaacagaattggcaaccttctgg 74753
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>ref|NM_139931.2| Drosophila melanogaster CG8005-RA (CG8005), mRNA
          Length = 1225

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 366 aatcaacagaatttgcaaccttctgg 391
           ||||||||||||| ||||||||||||
Sbjct: 554 aatcaacagaattggcaaccttctgg 579
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>ref|NM_132224.1| Drosophila melanogaster G5 CG10763-RA (Gbeta5), mRNA
          Length = 1561

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 122 catgtcccagatgaaggccatg 143
           ||||||||||||||||||||||
Sbjct: 828 catgtcccagatgaaggccatg 807
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 140     catgatcgaccacgaccaggag 161
               ||||||||||||||||||||||
Sbjct: 1697918 catgatcgaccacgaccaggag 1697897
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>gb|BT004841.1| Drosophila melanogaster RH17413 full insert cDNA
          Length = 1564

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 122 catgtcccagatgaaggccatg 143
           ||||||||||||||||||||||
Sbjct: 829 catgtcccagatgaaggccatg 808
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>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete
              sequence
          Length = 281917

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 366    aatcaacagaatttgcaaccttctgg 391
              ||||||||||||| ||||||||||||
Sbjct: 147289 aatcaacagaattggcaaccttctgg 147314
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
             sequence
          Length = 299153

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 122   catgtcccagatgaaggccatg 143
             ||||||||||||||||||||||
Sbjct: 35267 catgtcccagatgaaggccatg 35288
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 175     tgctcgtcgagaaccccgacgt 196
               ||||||||||||||||||||||
Sbjct: 1662314 tgctcgtcgagaaccccgacgt 1662335
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>gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosome 14, complete sequence
          Length = 216861

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 377    tttgcaaccttctggccaatttccat 402
              |||||||||||||||||| |||||||
Sbjct: 208563 tttgcaaccttctggccagtttccat 208588
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>gb|AC167421.2| Mus musculus BAC clone RP23-143K19 from chromosome 3, complete sequence
          Length = 194311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 314   taaagctacaacacaagatca 334
             |||||||||||||||||||||
Sbjct: 10929 taaagctacaacacaagatca 10909
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>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence
          Length = 172081

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 314   taaagctacaacacaagatca 334
             |||||||||||||||||||||
Sbjct: 54114 taaagctacaacacaagatca 54134
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>ref|XM_988518.1| PREDICTED: Mus musculus hypothetical protein LOC671688 (LOC671688),
           mRNA
          Length = 896

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 16  ccggccgctcccctgctcccgcgcg 40
           |||||||||||||| ||||||||||
Sbjct: 286 ccggccgctcccctcctcccgcgcg 310
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>ref|XM_988194.1| PREDICTED: Mus musculus hypothetical protein LOC676214 (LOC676214),
           mRNA
          Length = 1073

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 16  ccggccgctcccctgctcccgcgcg 40
           |||||||||||||| ||||||||||
Sbjct: 463 ccggccgctcccctcctcccgcgcg 487
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>ref|XM_898427.2| PREDICTED: Mus musculus hypothetical LOC624685 (LOC624685), mRNA
          Length = 4789

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 16   ccggccgctcccctgctcccgcgcg 40
            |||||||||||||| ||||||||||
Sbjct: 3313 ccggccgctcccctcctcccgcgcg 3337
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>dbj|AK154950.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630112K10
           product:hypothetical protein, full insert sequence
          Length = 3719

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 16  ccggccgctcccctgctcccgcgcg 40
           |||||||||||||| ||||||||||
Sbjct: 450 ccggccgctcccctcctcccgcgcg 426
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>dbj|AK039704.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330091H04
           product:unclassifiable, full insert sequence
          Length = 1933

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 16  ccggccgctcccctgctcccgcgcg 40
           |||||||||||||| ||||||||||
Sbjct: 457 ccggccgctcccctcctcccgcgcg 481
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>emb|AL772228.5| Mouse DNA sequence from clone RP23-236D1 on chromosome 4, complete
             sequence
          Length = 167555

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    ccggccgctcccctgctcccgcgcg 40
             |||||||||||||| ||||||||||
Sbjct: 75213 ccggccgctcccctcctcccgcgcg 75189
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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster,
             partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   cgtcgagaaccccgacgtca 198
             ||||||||||||||||||||
Sbjct: 17819 cgtcgagaaccccgacgtca 17800
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>emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 in linkage group 6,
              complete sequence
          Length = 223513

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    cacaatcagcacaatcaaaa 479
              ||||||||||||||||||||
Sbjct: 134926 cacaatcagcacaatcaaaa 134945
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>emb|AL035700.13|HS75K24 Human DNA sequence from clone RP1-75K24 on chromosome 6q13-15, complete
             sequence
          Length = 80279

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   agtattcaaatgttccatct 587
             ||||||||||||||||||||
Sbjct: 61642 agtattcaaatgttccatct 61623
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 17     cggccgctcccctgctcccgcgcgcgcc 44
              |||||| |||||||||||||| ||||||
Sbjct: 102047 cggccgttcccctgctcccgcccgcgcc 102020
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>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5,
             complete sequence
          Length = 122930

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 278   gtcagcagttgctcagataactcc 301
             ||||||||||| ||||||||||||
Sbjct: 93983 gtcagcagttgttcagataactcc 93960
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 521      gtcatctcagtatccaaatg 540
                ||||||||||||||||||||
Sbjct: 14631198 gtcatctcagtatccaaatg 14631179
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>gb|AC003029.5| Homo sapiens 12 PAC RP3-462E2 (Roswell Park Cancer institute Human PAC
             Library) complete sequence
          Length = 137830

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   tgcctcagcctcacttgcctacca 366
             |||||| |||||||||||||||||
Sbjct: 69712 tgcctcggcctcacttgcctacca 69689
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>gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51708

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   ttgctcagataactccttct 305
             ||||||||||||||||||||
Sbjct: 35811 ttgctcagataactccttct 35792
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      cgcgcgcgccatgacggcga 54
               ||||||||||||||||||||
Sbjct: 3417007 cgcgcgcgccatgacggcga 3416988
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>emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in linkage group 5,
             complete sequence
          Length = 191256

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 278   gtcagcagttgctcagataactcc 301
             ||||||||||| ||||||||||||
Sbjct: 34584 gtcagcagttgttcagataactcc 34607
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>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   gtcatctcagtatccaaatg 540
             ||||||||||||||||||||
Sbjct: 52865 gtcatctcagtatccaaatg 52846
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>gb|AE005127.1| Halobacterium sp. NRC-1 section 158 of 170 of the complete genome
          Length = 10420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 89   ctccggcatgtcccgcccggagatgcacgacc 120
            ||||||||| | |||||||||||||| |||||
Sbjct: 7352 ctccggcatcttccgcccggagatgctcgacc 7383
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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   cgtcgagaaccccgacgtca 198
             ||||||||||||||||||||
Sbjct: 27173 cgtcgagaaccccgacgtca 27154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,046,405
Number of Sequences: 3902068
Number of extensions: 5046405
Number of successful extensions: 113158
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112785
Number of HSP's gapped (non-prelim): 373
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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