ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3m12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113M01, full insert sequence Length = 2519 Score = 268 bits (135), Expect = 2e-68 Identities = 248/286 (86%), Gaps = 6/286 (2%) Strand = Plus / Plus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggttgcttggttg 63 |||| ||||||||||||||| ||||| |||||| | |||||||||||||||||||||||| Sbjct: 635 ttactacatgaaaaggctaggggcattataattgctgcccttgatgaggttgcttggttg 694 Query: 64 tacaatgttcggggaaatgacgtgcattacagcccagtggttcattcttatgctattgta 123 |||||| || | |||||||| ||||| |||||||||||||| ||||| ||| |||||||| Sbjct: 695 tacaatattagaggaaatgatgtgcactacagcccagtggtccattcgtattctattgta 754 Query: 124 accctgcatggtgccttcttttatgtggataagagaaaagtaacaactgaggttaagaac 183 |||||||| |||| ||||||||||||||||| ||||||||| | ||| ||| | Sbjct: 755 accctgcacagtgctttcttttatgtggataacagaaaagtatc------tgttgagagc 808 Query: 184 tacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatgtgagc 243 |||||| |||| | |||||||||||||||||| ||| |||||||||| ||||| ||| Sbjct: 809 tacatgtctgagaatggtattgatatcagagactataatatggttcaatcagatgtaagc 868 Query: 244 ttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 869 ttgcttgcatctggacagctaaaaggctctgcagttaatggtagct 914 Score = 131 bits (66), Expect = 3e-27 Identities = 160/190 (84%), Gaps = 1/190 (0%) Strand = Plus / Plus Query: 346 aattcgtgttgccttgcactctactcaaagcttagaccagatcaagctttgatgctgcaa 405 |||||||| |||||||||||||||||||| || |||||||| | | || |||||| Sbjct: 962 aattcgtgctgccttgcactctactcaaaactggatgaagatcaagttcttatactgcaa 1021 Query: 406 tcacccattgctctaccaaaagctgtcaagaatcctatggagctgaatggtttgaggaag 465 ||||| ||||||| |||| ||||| |||||||| | |||||| |||||||||||||| Sbjct: 1022 tcacctgttgctctttcaaaggctgtgaagaatcccgtagagctggatggtttgaggaag 1081 Query: 466 gcacacattcgggatggcacagcttgttgtgcaatacctggcttggcttgataatcagat 525 ||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct: 1082 gcacatattcgagatggtgtggct-gttgtgcaatacctggcttggcttgacaatcagat 1140 Query: 526 gcaagagaac 535 |||||||||| Sbjct: 1141 gcaagagaac 1150
>dbj|AK105673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A09, full insert sequence Length = 1721 Score = 256 bits (129), Expect = 7e-65 Identities = 243/281 (86%) Strand = Plus / Plus Query: 9 acatgaaaaggctagcggcatcataattacggcccttgatgaggttgcttggttgtacaa 68 ||||||||||||||| ||||| |||||| | || |||||||||||||||||||||||||| Sbjct: 1 acatgaaaaggctaggggcattataattgctgcacttgatgaggttgcttggttgtacaa 60 Query: 69 tgttcggggaaatgacgtgcattacagcccagtggttcattcttatgctattgtaaccct 128 | || | ||| |||| ||||| |||||||||||||| ||||||||| ||||||||||| | Sbjct: 61 tattagaggagatgatgtgcactacagcccagtggtccattcttattctattgtaacctt 120 Query: 129 gcatggtgccttcttttatgtggataagagaaaagtaacaactgaggttaagaactacat 188 ||| |||| ||||||||||||||||||||||||||| | |||||| |||||||||| Sbjct: 121 gcacagtgctttcttttatgtggataagagaaaagtatctgttgaggtccagaactacat 180 Query: 189 ggctgaaattggtattgatatcagagagtatgatatggttcagctggatgtgagcttgct 248 | |||| | |||||| ||||||| ||| ||| |||||||||| |||| |||||||| Sbjct: 181 gactgataatggtatcgatatcaaagactataatatggttcaatcagatgcaagcttgct 240 Query: 249 tgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 241 tgcatctggacagctaaaaggttctgcagttaatggtagct 281 Score = 186 bits (94), Expect = 5e-44 Identities = 176/202 (87%), Gaps = 1/202 (0%) Strand = Plus / Plus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || || |||||||| |||||||| || | |||||||| | Sbjct: 320 tggattgattcaaattcatgctgtcttgcactgtactcaaaactggatcaagatcaagtt 379 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgtcaagaatcctatggagctgaat 453 |||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||| || Sbjct: 380 ctgatgctgcaatcacctattgctcttccaaaggctgtgaagaatcccgtggagctggat 439 Query: 454 ggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacctggcttggct 513 ||||||||||||||||| ||||| ||||| | || |||||||||||||||||||||||| Sbjct: 440 ggtttgaggaaggcacatattcgagatggtgctgc-tgttgtgcaatacctggcttggct 498 Query: 514 tgataatcagatgcaagagaac 535 ||| |||||||||||||||||| Sbjct: 499 tgacaatcagatgcaagagaac 520
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | |||||||| ||||| |||||||||||||| |||| Sbjct: 69427 aggttgcttggttgtacaatattagaggaaatgatgtgcactacagcccagtggtccatt 69368 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 | ||| |||||||||||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 69367 cgtattctattgtaaccctgcacagtgctttcttttatgtggataacagaaaagta 69312 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | ||| |||| ||||| |||||||||||||| |||| Sbjct: 53558 aggttgcttggttgtacaatattagaggagatgatgtgcactacagcccagtggtccatt 53499 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct: 53498 cttattctattgtaaccttgcacagtgctttcttttatgtggataagagaaaagta 53443 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 183 ctacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatgtgag 242 ||||||| |||| | |||||||||||||||||| ||| |||||||||| ||||| || Sbjct: 69182 ctacatgtctgagaatggtattgatatcagagactataatatggttcaatcagatgtaag 69123 Query: 243 cttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 69122 cttgcttgcatctggacagctaaaaggctctgcagttaatggtagct 69076 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 179 agaactacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatg 238 ||||||||||| |||| | |||||| ||||||| ||| ||| |||||||||| |||| Sbjct: 53315 agaactacatgactgataatggtatcgatatcaaagactataatatggttcaatcagatg 53256 Query: 239 tgagcttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 53255 caagcttgcttgcatctggacagctaaaaggttctgcagttaatggtagct 53205 Score = 91.7 bits (46), Expect = 2e-15 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 434 agaatcctatggagctgaatggtttgaggaaggcacacattcgggatggcacagcttgtt 493 ||||||| |||||||| ||||||||||||||||||| ||||| ||||| | ||| ||| Sbjct: 51988 agaatcccgtggagctggatggtttgaggaaggcacatattcgagatggtgctgct-gtt 51930 Query: 494 gtgcaatacctggcttggcttgataatcag 523 ||||||||||||||||||||||| |||||| Sbjct: 51929 gtgcaatacctggcttggcttgacaatcag 51900 Score = 77.8 bits (39), Expect = 3e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 67842 gagctggatggtttgaggaaggcacatattcgagatggtgtggct-gttgtgcaatacct 67784 Query: 505 ggcttggcttgataatcag 523 |||||||||||| |||||| Sbjct: 67783 ggcttggcttgacaatcag 67765 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || || |||||||| |||||||| || | |||||||| | Sbjct: 53166 tggattgattcaaattcatgctgtcttgcactgtactcaaaactggatcaagatcaagtt 53107 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 53106 ctgatgctgcaatcacctattgctcttccaaaggctgt 53069 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 |||| ||||||||||||||| ||||| |||||| | |||||||||||||| Sbjct: 69603 ttactacatgaaaaggctaggggcattataattgctgcccttgatgaggt 69554 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 346 aattcgtgttgccttgcactctactcaaa 374 |||||||| |||||||||||||||||||| Sbjct: 69028 aattcgtgctgccttgcactctactcaaa 69000 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 9 acatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 ||||||||||||||| ||||| |||||| | || ||||||||||| Sbjct: 53726 acatgaaaaggctaggggcattataattgctgcacttgatgaggt 53682
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | |||||||| ||||| |||||||||||||| |||| Sbjct: 19066609 aggttgcttggttgtacaatattagaggaaatgatgtgcactacagcccagtggtccatt 19066550 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 | ||| |||||||||||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 19066549 cgtattctattgtaaccctgcacagtgctttcttttatgtggataacagaaaagta 19066494 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | ||| |||| ||||| |||||||||||||| |||| Sbjct: 19050740 aggttgcttggttgtacaatattagaggagatgatgtgcactacagcccagtggtccatt 19050681 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct: 19050680 cttattctattgtaaccttgcacagtgctttcttttatgtggataagagaaaagta 19050625 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 183 ctacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatgtgag 242 ||||||| |||| | |||||||||||||||||| ||| |||||||||| ||||| || Sbjct: 19066364 ctacatgtctgagaatggtattgatatcagagactataatatggttcaatcagatgtaag 19066305 Query: 243 cttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19066304 cttgcttgcatctggacagctaaaaggctctgcagttaatggtagct 19066258 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 179 agaactacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatg 238 ||||||||||| |||| | |||||| ||||||| ||| ||| |||||||||| |||| Sbjct: 19050497 agaactacatgactgataatggtatcgatatcaaagactataatatggttcaatcagatg 19050438 Query: 239 tgagcttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 19050437 caagcttgcttgcatctggacagctaaaaggttctgcagttaatggtagct 19050387 Score = 91.7 bits (46), Expect = 2e-15 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 434 agaatcctatggagctgaatggtttgaggaaggcacacattcgggatggcacagcttgtt 493 ||||||| |||||||| ||||||||||||||||||| ||||| ||||| | ||| ||| Sbjct: 19049170 agaatcccgtggagctggatggtttgaggaaggcacatattcgagatggtgctgct-gtt 19049112 Query: 494 gtgcaatacctggcttggcttgataatcag 523 ||||||||||||||||||||||| |||||| Sbjct: 19049111 gtgcaatacctggcttggcttgacaatcag 19049082 Score = 77.8 bits (39), Expect = 3e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 19065024 gagctggatggtttgaggaaggcacatattcgagatggtgtggct-gttgtgcaatacct 19064966 Query: 505 ggcttggcttgataatcag 523 |||||||||||| |||||| Sbjct: 19064965 ggcttggcttgacaatcag 19064947 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || || |||||||| |||||||| || | |||||||| | Sbjct: 19050348 tggattgattcaaattcatgctgtcttgcactgtactcaaaactggatcaagatcaagtt 19050289 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 19050288 ctgatgctgcaatcacctattgctcttccaaaggctgt 19050251 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 |||| ||||||||||||||| ||||| |||||| | |||||||||||||| Sbjct: 19066785 ttactacatgaaaaggctaggggcattataattgctgcccttgatgaggt 19066736 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 346 aattcgtgttgccttgcactctactcaaa 374 |||||||| |||||||||||||||||||| Sbjct: 19066210 aattcgtgctgccttgcactctactcaaa 19066182 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 9 acatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 ||||||||||||||| ||||| |||||| | || ||||||||||| Sbjct: 19050908 acatgaaaaggctaggggcattataattgctgcacttgatgaggt 19050864
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | |||||||| ||||| |||||||||||||| |||| Sbjct: 19225258 aggttgcttggttgtacaatattagaggaaatgatgtgcactacagcccagtggtccatt 19225199 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 | ||| |||||||||||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 19225198 cgtattctattgtaaccctgcacagtgctttcttttatgtggataacagaaaagta 19225143 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 |||||||||||||||||||| || | ||| |||| ||||| |||||||||||||| |||| Sbjct: 19209389 aggttgcttggttgtacaatattagaggagatgatgtgcactacagcccagtggtccatt 19209330 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct: 19209329 cttattctattgtaaccttgcacagtgctttcttttatgtggataagagaaaagta 19209274 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 183 ctacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatgtgag 242 ||||||| |||| | |||||||||||||||||| ||| |||||||||| ||||| || Sbjct: 19225013 ctacatgtctgagaatggtattgatatcagagactataatatggttcaatcagatgtaag 19224954 Query: 243 cttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19224953 cttgcttgcatctggacagctaaaaggctctgcagttaatggtagct 19224907 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 179 agaactacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatg 238 ||||||||||| |||| | |||||| ||||||| ||| ||| |||||||||| |||| Sbjct: 19209146 agaactacatgactgataatggtatcgatatcaaagactataatatggttcaatcagatg 19209087 Query: 239 tgagcttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 19209086 caagcttgcttgcatctggacagctaaaaggttctgcagttaatggtagct 19209036 Score = 91.7 bits (46), Expect = 2e-15 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 434 agaatcctatggagctgaatggtttgaggaaggcacacattcgggatggcacagcttgtt 493 ||||||| |||||||| ||||||||||||||||||| ||||| ||||| | ||| ||| Sbjct: 19207819 agaatcccgtggagctggatggtttgaggaaggcacatattcgagatggtgctgct-gtt 19207761 Query: 494 gtgcaatacctggcttggcttgataatcag 523 ||||||||||||||||||||||| |||||| Sbjct: 19207760 gtgcaatacctggcttggcttgacaatcag 19207731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 19223673 gagctggatggtttgaggaaggcacatattcgagatggtgtggct-gttgtgcaatacct 19223615 Query: 505 ggcttggcttgataatcag 523 |||||||||||| |||||| Sbjct: 19223614 ggcttggcttgacaatcag 19223596 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || || |||||||| |||||||| || | |||||||| | Sbjct: 19208997 tggattgattcaaattcatgctgtcttgcactgtactcaaaactggatcaagatcaagtt 19208938 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 19208937 ctgatgctgcaatcacctattgctcttccaaaggctgt 19208900 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 |||| ||||||||||||||| ||||| |||||| | |||||||||||||| Sbjct: 19225434 ttactacatgaaaaggctaggggcattataattgctgcccttgatgaggt 19225385 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 346 aattcgtgttgccttgcactctactcaaa 374 |||||||| |||||||||||||||||||| Sbjct: 19224859 aattcgtgctgccttgcactctactcaaa 19224831 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 9 acatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 ||||||||||||||| ||||| |||||| | || ||||||||||| Sbjct: 19209557 acatgaaaaggctaggggcattataattgctgcacttgatgaggt 19209513
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 127 bits (64), Expect = 4e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 ||||||| ||||||||||| || | |||||||| ||||| |||||||||||||| |||| Sbjct: 27041892 aggttgcgtggttgtacaacattagaggaaatgatgtgcactacagcccagtggtccatt 27041833 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct: 27041832 cttattctattgtaaccttgcacagtgctttcttttatgtggataagagaaaagta 27041777 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 179 agaactacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatg 238 ||||||||||| |||| | ||||||||| |||| ||| ||| |||||||||| |||| Sbjct: 27041651 agaactacatgactgagaatggtattgacatcaaagactataatatggttcaatcagatg 27041592 Query: 239 tgagcttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct: 27041591 caagcttgcttgcatctggacagctaaaaggttctgcagtcaatggtagct 27041541 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || |||||||||||||||||||| || | | |||||| | Sbjct: 27041502 tggattgattcaaattcatgctgccttgcactctactcaaaactggatcaatatcaagtt 27041443 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 27041442 ctgatgctgcaatcacctattgctcttccaaaggctgt 27041405 Score = 63.9 bits (32), Expect = 5e-07 Identities = 63/72 (87%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| | || ||| ||||||||||| Sbjct: 27041070 gagctggatggtttgaggaaggcacatattcgagatggtgcggc-tgtcgtgcaatacct 27041012 Query: 505 ggcttggcttga 516 ||||||||||| Sbjct: 27041011 tgcttggcttga 27041000 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 |||||||||||||||||||| ||||| |||||| | || ||||||||||| Sbjct: 27042060 ttacaacatgaaaaggctaggggcattataattgctgcgcttgatgaggt 27042011 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 10403224 ttccaaaatctggattgatt 10403243
>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0473H04 Length = 155204 Score = 127 bits (64), Expect = 4e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 50 aggttgcttggttgtacaatgttcggggaaatgacgtgcattacagcccagtggttcatt 109 ||||||| ||||||||||| || | |||||||| ||||| |||||||||||||| |||| Sbjct: 10702 aggttgcgtggttgtacaacattagaggaaatgatgtgcactacagcccagtggtccatt 10643 Query: 110 cttatgctattgtaaccctgcatggtgccttcttttatgtggataagagaaaagta 165 ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct: 10642 cttattctattgtaaccttgcacagtgctttcttttatgtggataagagaaaagta 10587 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 179 agaactacatggctgaaattggtattgatatcagagagtatgatatggttcagctggatg 238 ||||||||||| |||| | ||||||||| |||| ||| ||| |||||||||| |||| Sbjct: 10461 agaactacatgactgagaatggtattgacatcaaagactataatatggttcaatcagatg 10402 Query: 239 tgagcttgcttgcttctggacagctaaaaggctctgcagttaatggtagct 289 ||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct: 10401 caagcttgcttgcatctggacagctaaaaggttctgcagtcaatggtagct 10351 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || |||||||||||||||||||| || | | |||||| | Sbjct: 10312 tggattgattcaaattcatgctgccttgcactctactcaaaactggatcaatatcaagtt 10253 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 10252 ctgatgctgcaatcacctattgctcttccaaaggctgt 10215 Score = 63.9 bits (32), Expect = 5e-07 Identities = 63/72 (87%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| | || ||| ||||||||||| Sbjct: 9880 gagctggatggtttgaggaaggcacatattcgagatggtgcggc-tgtcgtgcaatacct 9822 Query: 505 ggcttggcttga 516 ||||||||||| Sbjct: 9821 tgcttggcttga 9810 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 ttacaacatgaaaaggctagcggcatcataattacggcccttgatgaggt 53 |||||||||||||||||||| ||||| |||||| | || ||||||||||| Sbjct: 10870 ttacaacatgaaaaggctaggggcattataattgctgcgcttgatgaggt 10821
>gb|AY106785.1| Zea mays PCO139190 mRNA sequence Length = 1536 Score = 103 bits (52), Expect = 6e-19 Identities = 152/184 (82%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 352 tgttgccttgcactctactcaaagcttagaccagatcaagctttgatgctgcaatcaccc 411 ||||||||||||||||||||||| | || ||| |||||| ||||| ||| |||||||| Sbjct: 133 tgttgccttgcactctactcaaaattgagtccacatcaagttttgacgcttcaatcacca 192 Query: 412 attgctctaccaaaagctgtcaagaatcctatggagctgaatggtttgaggaaggcacac 471 ||||| || ||||| ||||| ||||| || | || ||| |||| ||||||||||| || Sbjct: 193 attgcccttccaaaggctgttaagaaccccacagaactggatggattgaggaaggcgcat 252 Query: 472 attcgggatggcacagcttgttgtgcaatacctggcttggcttgataatcagatgcaaga 531 ||||| ||||| | || |||||| || ||||| |||||||| |||||||||||||| || Sbjct: 253 attcgagatggtgccgc-tgttgtacagtaccttgcttggctggataatcagatgcagga 311 Query: 532 gaac 535 |||| Sbjct: 312 gaac 315
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 334 tggattgattcaaattcgtgttgccttgcactctactcaaagcttagaccagatcaagct 393 ||||||||||||||||| || |||||||||||||||||||| || | | |||||| | Sbjct: 165263 tggattgattcaaattcatgctgccttgcactctactcaaaactggatcaatatcaagtt 165204 Query: 394 ttgatgctgcaatcacccattgctctaccaaaagctgt 431 |||||||||||||||| |||||||| ||||| ||||| Sbjct: 165203 ctgatgctgcaatcacctattgctcttccaaaggctgt 165166 Score = 63.9 bits (32), Expect = 5e-07 Identities = 63/72 (87%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 445 gagctgaatggtttgaggaaggcacacattcgggatggcacagcttgttgtgcaatacct 504 |||||| ||||||||||||||||||| ||||| ||||| | || ||| ||||||||||| Sbjct: 164831 gagctggatggtttgaggaaggcacatattcgagatggtgcggc-tgtcgtgcaatacct 164773 Query: 505 ggcttggcttga 516 ||||||||||| Sbjct: 164772 tgcttggcttga 164761
>gb|AC003992.2| Homo sapiens BAC clone CTA-250D13 from 7, complete sequence Length = 176109 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aacatgaaaaggctagcggca 28 ||||||||||||||||||||| Sbjct: 27871 aacatgaaaaggctagcggca 27851
>gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, complete sequence Length = 147837 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aacatgaaaaggctagcggca 28 ||||||||||||||||||||| Sbjct: 6159 aacatgaaaaggctagcggca 6139
>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence Length = 115804 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ggttgcttggttgtacaatgt 71 ||||||||||||||||||||| Sbjct: 55423 ggttgcttggttgtacaatgt 55443
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence Length = 147062 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ggttgcttggttgtacaatgt 71 ||||||||||||||||||||| Sbjct: 91640 ggttgcttggttgtacaatgt 91620
>gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete sequence Length = 117901 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ggttgcttggttgtacaatgt 71 ||||||||||||||||||||| Sbjct: 17246 ggttgcttggttgtacaatgt 17226
>dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M21, complete sequence Length = 154715 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 aacatgaaaaggctagcggca 28 ||||||||||||||||||||| Sbjct: 102786 aacatgaaaaggctagcggca 102806
>gb|AC163745.4| Pan troglodytes BAC clone CH251-381N15 from chromosome 7, complete sequence Length = 185876 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aacatgaaaaggctagcggca 28 ||||||||||||||||||||| Sbjct: 152182 aacatgaaaaggctagcggca 152162
>ref|NM_001031708.1| Homo sapiens coiled-coil domain containing 25 (CCDC25), transcript variant 1, mRNA Length = 3607 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3424 cagctggatgtgagcttgct 3405
>ref|NM_018246.1| Homo sapiens coiled-coil domain containing 25 (CCDC25), transcript variant 2, mRNA Length = 3598 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3430 cagctggatgtgagcttgct 3411
>gb|AC164982.2| Mus musculus BAC clone RP23-57A9 from chromosome 9, complete sequence Length = 247463 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttcaaattcgtgttgccttg 361 |||||||||||||||||||| Sbjct: 67758 ttcaaattcgtgttgccttg 67739
>gb|AC121787.3| Mus musculus BAC clone RP23-393K24 from chromosome 9, complete sequence Length = 200985 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttcaaattcgtgttgccttg 361 |||||||||||||||||||| Sbjct: 105614 ttcaaattcgtgttgccttg 105595
>gb|BC065295.1| Homo sapiens coiled-coil domain containing 25, transcript variant 1, mRNA (cDNA clone MGC:70719 IMAGE:6139413), complete cds Length = 3607 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3424 cagctggatgtgagcttgct 3405
>gb|AF235104.5| Homo sapiens chromosome 8 clone GS1-251I7 map p21-p11, complete sequence Length = 175380 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 124912 cagctggatgtgagcttgct 124931
>gb|AC166078.2| Mus musculus BAC clone RP23-13G1 from chromosome 9, complete sequence Length = 225128 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ttcaaattcgtgttgccttg 361 |||||||||||||||||||| Sbjct: 8379 ttcaaattcgtgttgccttg 8398
>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains the gene for MD-1,RP105-associated, part of a putative novel gene and three putative CpG islands, complete sequence Length = 193731 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 acaactgaggttaagaacta 185 |||||||||||||||||||| Sbjct: 160974 acaactgaggttaagaacta 160993
>emb|CR859224.1| Pongo pygmaeus mRNA; cDNA DKFZp459A2231 (from clone DKFZp459A2231) Length = 3545 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3360 cagctggatgtgagcttgct 3341
>emb|CR859912.1| Pongo pygmaeus mRNA; cDNA DKFZp469H242 (from clone DKFZp469H242) Length = 3646 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3464 cagctggatgtgagcttgct 3445
>gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence Length = 135273 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 gcacagcttgttgtgcaata 501 |||||||||||||||||||| Sbjct: 90530 gcacagcttgttgtgcaata 90511
>dbj|AK001715.1| Homo sapiens cDNA FLJ10853 fis, clone NT2RP4001502 Length = 3598 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 3430 cagctggatgtgagcttgct 3411
>gb|AC013643.10| Homo sapiens chromosome 8, clone RP11-16P20, complete sequence Length = 157324 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cagctggatgtgagcttgct 248 |||||||||||||||||||| Sbjct: 121419 cagctggatgtgagcttgct 121438
>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete sequence Length = 240564 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 gcacagcttgttgtgcaata 501 |||||||||||||||||||| Sbjct: 91507 gcacagcttgttgtgcaata 91488
>gb|BC050584.1| Homo sapiens, clone IMAGE:6069799, mRNA Length = 3594 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 acaactgaggttaagaacta 185 |||||||||||||||||||| Sbjct: 3155 acaactgaggttaagaacta 3136
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 2973534 ttccaaaatctggattgatt 2973515
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 100290 ttccaaaatctggattgatt 100309
>gb|AC151966.3| Mus musculus BAC clone RP24-178P9 from chromosome 9, complete sequence Length = 159840 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttcaaattcgtgttgccttg 361 |||||||||||||||||||| Sbjct: 15951 ttcaaattcgtgttgccttg 15932
>dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1197G05 Length = 130823 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 110761 ttccaaaatctggattgatt 110780
>dbj|AP006059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0023E08 Length = 127560 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 100290 ttccaaaatctggattgatt 100309
>emb|AJ308541.1|LES308541 Lycopersicon esculentum mRNA for Xaa-Pro aminopeptidase 1 (app1 gene) Length = 2198 Score = 40.1 bits (20), Expect = 7.2 Identities = 48/56 (85%), Gaps = 1/56 (1%) Strand = Plus / Plus Query: 473 ttcgggatggcacagcttgttgtgcaatacctggcttggcttgataatcagatgca 528 |||||||||| ||||| ||||||||||| || | ||||||||||| |||||||| Sbjct: 1115 ttcgggatggggcagct-gttgtgcaatatcttgtctggcttgataagcagatgca 1169
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 2973478 ttccaaaatctggattgatt 2973459
>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145661 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttccaaaatctggattgatt 343 |||||||||||||||||||| Sbjct: 42568 ttccaaaatctggattgatt 42587
>gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, complete sequence Length = 171533 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gctgtcaagaatcctatgga 446 |||||||||||||||||||| Sbjct: 90313 gctgtcaagaatcctatgga 90332
>gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromosome unknown, complete sequence Length = 236827 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 gcacagcttgttgtgcaata 501 |||||||||||||||||||| Sbjct: 236715 gcacagcttgttgtgcaata 236734 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,613,630 Number of Sequences: 3902068 Number of extensions: 4613630 Number of successful extensions: 77573 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 77304 Number of HSP's gapped (non-prelim): 248 length of query: 535 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 512 effective length of database: 17,143,297,704 effective search space: 8777368424448 effective search space used: 8777368424448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
