>RN126_XENTR (Q6DIP3) RING finger protein 126|
          Length = 311

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 146 MAEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGRRSSN 295
           MAE      RY+C+ C+  + P L   E  CP C SGF+EE+ + R S N
Sbjct: 1   MAEALPEAGRYFCHSCTAEIIPRL--PEYTCPRCDSGFIEELPETRNSEN 48

>RN126_HUMAN (Q9BV68) RING finger protein 126|
          Length = 326

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +2

Query: 146 MAEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGRRSS 292
           MAE      RY+C+ CSV + P L   +  CP C SGF+EE+ +  RS+
Sbjct: 1   MAEASPHPGRYFCHCCSVEIVPRL--PDYICPRCESGFIEELPEETRST 47

>R126B_XENLA (Q6IRP0) RING finger protein 126-B|
          Length = 312

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 146 MAEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGRRSSNA 298
           MAE      RY+C+ C+  ++P L   E  CP C SGF+EE+ +  R+S +
Sbjct: 1   MAEALPEAGRYFCHSCTAEITPRL--PEYTCPRCDSGFIEELPETSRNSES 49

>R126A_XENLA (Q7T0Q3) RING finger protein 126-A|
          Length = 312

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +2

Query: 146 MAEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGRRSS 292
           MAE      RY+C+ C+  ++P L   E  CP C SGF+EE+ +  R+S
Sbjct: 1   MAEALPKAGRYFCHSCTAEITPRL--PEYTCPRCDSGFIEELPETSRNS 47

>RN126_MOUSE (Q91YL2) RING finger protein 126|
          Length = 313

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +2

Query: 146 MAEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGRRSS 292
           MAE      RY+C+ CSV + P L   +  CP C SGF+EE+ +  R++
Sbjct: 1   MAEASPQPGRYFCHCCSVEIVPRL--PDYICPRCESGFIEELPEETRNT 47

>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein|
           115)
          Length = 304

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 164 ATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMAD 277
           A  R++C+ C   VSP+L   E  CP C SGF+EE+ D
Sbjct: 16  AAHRFFCHFCKGEVSPKL--PEYICPRCESGFIEEVTD 51

>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)|
          Length = 305

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 164 ATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEMAD 277
           A  R++C+ C   V+P+L   E  CP C SGF+EE+ D
Sbjct: 16  AAHRFFCHFCKGEVNPKL--PEYICPRCDSGFIEEVTD 51

>CIP8_ARATH (Q9SPL2) Ubiquitin-protein ligase CIP8 (EC 6.3.2.-)|
           (COP1-interacting protein 8)
          Length = 334

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 149 AEEPGATSRYYCYMCSVIVSPELGVEEVKCPHCRSGFVEEM 271
           +  P AT+ ++CY C+  V  E   + V C  C  GFVE +
Sbjct: 6   SSSPDATASHWCYHCNKRVVVETLDDFVVCCECNKGFVESI 46

>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 769

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 362 RAPTLRQRHLGRPLRQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPP---RRPALGLRL 198
           + P  + +H+ RP +   G P  C      P PP   +GS G SPP     P++G+ +
Sbjct: 554 KLPKKKNKHIPRPPQP--GSPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVNV 609

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 362 RAPTLRQRHLGRPLRQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPP 225
           + P  + +H+ RP +   G P  C      P PP   +GS G SPP
Sbjct: 555 KLPKKKNKHIPRPPQP--GSPNYCKPDPPPPPPPHPHHGSGGISPP 598

>HYPA2_SYNY3 (P73269) Probable hydrogenase nickel incorporation protein hypA 2|
          Length = 120

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 179 YCYMCSVIVSPELGVEEVKCPHCRSGFVEEMADGR 283
           YC+ C    SPE+G+ +  CP CRS  ++++  GR
Sbjct: 73  YCHTCQTEYSPEIGL-QYSCPTCRSP-MDDIRSGR 105

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 362 RAPTLRQRHLGRPLRQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPP 225
           + P  + +H+ RP +   G P  C      P PP   +GS G SPP
Sbjct: 554 KLPKKKNKHIPRPPQP--GSPNYCKPDPPPPPPPHPHHGSGGISPP 597

>RL34_AERPE (P58026) 50S ribosomal protein L34e|
          Length = 95

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
 Frame = -2

Query: 356 PTLRQRHLGRPLRQYHGL------------PRRCCSAGR------RPSPPRIRNGSAGTS 231
           P LR R L R  R+  G             P RC   GR      R  PPR+R  S    
Sbjct: 9   PGLRSRSLRRVYRRTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRLSKTAK 68

Query: 230 PPRRPALGLRLQSTC 186
            P RP  G+ L STC
Sbjct: 69  RPERPYGGV-LCSTC 82

>F13B_MOUSE (Q07968) Coagulation factor XIII B chain precursor|
           (Protein-glutamine gamma-glutamyltransferase B chain)
           (Transglutaminase B chain)
          Length = 668

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
 Frame = -2

Query: 287 SAGRRPSPPRIRNGSAGTSPPRRPALGLRLQSTC--SNSI*KSHRV---------PPPCL 141
           S G   SPP IRNG   +S  R    G  ++  C  ++ +  S  V         PP CL
Sbjct: 520 SKGMCASPPVIRNGDIVSSAARTYENGSSVEYRCFDNHFLQGSQNVYCVDGVWTTPPSCL 579

Query: 140 SP-ESSYLLDEEQQL*ERWSFFNNTREISAHGYQSKWEARR 21
            P   S++  ++  L  +W+F N  R +  HG   ++  +R
Sbjct: 580 EPCTLSFVEMDKNYLQLKWNFDN--RPLILHGEYIEFMCKR 618

>EMAL_DROME (Q9VUI3) Echinoderm microtubule-associated protein-like CG13466|
          Length = 819

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -3

Query: 274 GHLLH-----ESGTAVRALHLLDAQLWAYDYRAHVAIVSRSRTGFLRHVFLLRVPI-SSM 113
           GHLL      + G +  A H LD  L     R H+A   R + GF     +++ P  S +
Sbjct: 357 GHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAFWHRRKDGFFERTDIVKQPSRSHV 416

Query: 112 KSSSYEKDG 86
            S  +E DG
Sbjct: 417 TSVQFEPDG 425

>A4_TETFL (O73683) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer|
           disease amyloid A4 A4 protein homolog) [Contains:
           Beta-amyloid protein (Beta-APP) (A-beta)]
          Length = 780

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 487 VQELQEGEVAVLSSRQGREVATVEPVGDAEEVHE 386
           V+E +EGEVA     +  EV   +  GD EE HE
Sbjct: 240 VEEEEEGEVAQEDDEEEEEVLDTDQDGDGEEDHE 273

>V2A_CMVB (Q66136) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 857

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -2

Query: 320 RQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPPRRPALGLRLQSTCSNSI*KSHRVPPP 147
           R+ HG+ RRC    R P+        A T   +  + G R Q +   S  KS  VP P
Sbjct: 775 RKKHGIERRCNDKRRTPTGSYGGGEEAETKVSQTESTGTRSQKSQRESAFKSQTVPLP 832

>HUNB_DROMU (O46250) Protein hunchback (Fragments)|
          Length = 174

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 347 RQRHLGRPLRQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPPRRPAL 210
           +Q+H      Q+     RCC+A   PSP      S G   P +P +
Sbjct: 59  QQQHQQHQQHQHQQPMDRCCAAAMTPSPSNNDQNSPGLPNPMQPTM 104

>KSR2_HUMAN (Q6VAB6) Kinase suppressor of ras-2 (hKSR2)|
          Length = 829

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 314 YHGL-PRRCCSAGRRPSPPRIRNGSAGTSPPRRPALGLRLQSTCSNSI*KSHRVPPPCLS 138
           Y GL P     +G R  PP  R   A  +PPR P +   +    +  + K +++ PP   
Sbjct: 111 YPGLCPPPPLESGHRSLPPSPRQRHAVRTPPRTPNIVTTVTPPGTPPMRKKNKLKPPGTP 170

Query: 137 PESS 126
           P SS
Sbjct: 171 PPSS 174

>PCSK7_HUMAN (Q16549) Proprotein convertase subtilisin/kexin type 7 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC7)
           (Subtilisin/kexin-like protease PC7) (Prohormone
           convertase PC7) (PC8) (hPC8) (Lymphoma proprotein
           convertase)
          Length = 785

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 616 GAIAGSSLWHVHGVRVGGTNQHEPLEPRVWRVAVGIGIAFLERVQELQEGEVAVLSSRQG 437
           G   G + W VH   + G  + E LE +   +A   G+    R+ ELQ G    +     
Sbjct: 46  GQGTGGASWAVHLESLEGDGEEETLEQQADALAQAAGLVNAGRIGELQ-GHYLFVQPAGH 104

Query: 436 REVATVEPV 410
           R    VEP+
Sbjct: 105 RPALEVEPI 113

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 22/66 (33%), Positives = 27/66 (40%)
 Frame = -2

Query: 347 RQRHLGRPLRQYHGLPRRCCSAGRRPSPPRIRNGSAGTSPPRRPALGLRLQSTCSNSI*K 168
           R R   RP  +    PRR     R P PPR R   +     RR +  L   S+ S+S   
Sbjct: 304 RSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS--S 361

Query: 167 SHRVPP 150
             R PP
Sbjct: 362 RSRSPP 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,828,907
Number of Sequences: 219361
Number of extensions: 1358569
Number of successful extensions: 5411
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5402
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)