ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3m08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 2e-10 Identities = 114/138 (82%), Gaps = 6/138 (4%) Strand = Plus / Plus Query: 426 gcgacctcgcggccttggcgcgaagacagtaccgccacctcgccttcttgcagctcctga 485 |||||||||| ||||| ||||| || ||||||||| || |||||||| ||||||| || | Sbjct: 11790504 gcgacctcgccgccttcgcgcggaggcagtaccgcaacatcgccttcctgcagctgctca 11790563 Query: 486 acgcgctccaggaaggcgatgccgatgccgacggcgacgcgcc---agactcggggctcg 542 |||||||||||| ||| | ||| |||| ||||||| |||| |||||||||| || Sbjct: 11790564 gcgcgctccagga---cgacgacgaagccggcggcgacacgcccggcgactcggggcgcg 11790620 Query: 543 agcggctcgtgctggtta 560 |||||||||| ||||||| Sbjct: 11790621 agcggctcgttctggtta 11790638 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 176 tactattgctacatgtgctctgtaatcgtaagcccagagctgggcgtcgaggaggtgaag 235 |||| |||| |||||||||| | ||||| || || ||| ||||| |||||||||||||| Sbjct: 11790230 tacttttgccacatgtgctcgctgatcgtgaggccggagatgggcatcgaggaggtgaag 11790289 Query: 236 tgcccgcactgccgttccggattcgtggaggagatgg 272 ||||| ||||||| ||||| |||||||| ||||||| Sbjct: 11790290 tgcccccactgccactccggcttcgtggaagagatgg 11790326 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 31896822 cctcctcggcgtctcctacaggctc 31896846 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 31865983 cctcctcggcgtctcctaccggctc 31865959 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 380 cctatcctcatggacctcctcggcgtctc 408 ||||| ||||| ||||||||||||||||| Sbjct: 11790443 cctatgctcatagacctcctcggcgtctc 11790471
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 2e-10 Identities = 114/138 (82%), Gaps = 6/138 (4%) Strand = Plus / Plus Query: 426 gcgacctcgcggccttggcgcgaagacagtaccgccacctcgccttcttgcagctcctga 485 |||||||||| ||||| ||||| || ||||||||| || |||||||| ||||||| || | Sbjct: 11787267 gcgacctcgccgccttcgcgcggaggcagtaccgcaacatcgccttcctgcagctgctca 11787326 Query: 486 acgcgctccaggaaggcgatgccgatgccgacggcgacgcgcc---agactcggggctcg 542 |||||||||||| ||| | ||| |||| ||||||| |||| |||||||||| || Sbjct: 11787327 gcgcgctccagga---cgacgacgaagccggcggcgacacgcccggcgactcggggcgcg 11787383 Query: 543 agcggctcgtgctggtta 560 |||||||||| ||||||| Sbjct: 11787384 agcggctcgttctggtta 11787401 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 176 tactattgctacatgtgctctgtaatcgtaagcccagagctgggcgtcgaggaggtgaag 235 |||| |||| |||||||||| | ||||| || || ||| ||||| |||||||||||||| Sbjct: 11786993 tacttttgccacatgtgctcgctgatcgtgaggccggagatgggcatcgaggaggtgaag 11787052 Query: 236 tgcccgcactgccgttccggattcgtggaggagatgg 272 ||||| ||||||| ||||| |||||||| ||||||| Sbjct: 11787053 tgcccccactgccactccggcttcgtggaagagatgg 11787089 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 31987338 cctcctcggcgtctcctacaggctc 31987362 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 31956499 cctcctcggcgtctcctaccggctc 31956475 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 380 cctatcctcatggacctcctcggcgtctc 408 ||||| ||||| ||||||||||||||||| Sbjct: 11787206 cctatgctcatagacctcctcggcgtctc 11787234
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 75.8 bits (38), Expect = 2e-10 Identities = 114/138 (82%), Gaps = 6/138 (4%) Strand = Plus / Minus Query: 426 gcgacctcgcggccttggcgcgaagacagtaccgccacctcgccttcttgcagctcctga 485 |||||||||| ||||| ||||| || ||||||||| || |||||||| ||||||| || | Sbjct: 120149 gcgacctcgccgccttcgcgcggaggcagtaccgcaacatcgccttcctgcagctgctca 120090 Query: 486 acgcgctccaggaaggcgatgccgatgccgacggcgacgcgcc---agactcggggctcg 542 |||||||||||| ||| | ||| |||| ||||||| |||| |||||||||| || Sbjct: 120089 gcgcgctccagga---cgacgacgaagccggcggcgacacgcccggcgactcggggcgcg 120033 Query: 543 agcggctcgtgctggtta 560 |||||||||| ||||||| Sbjct: 120032 agcggctcgttctggtta 120015 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 176 tactattgctacatgtgctctgtaatcgtaagcccagagctgggcgtcgaggaggtgaag 235 |||| |||| |||||||||| | ||||| || || ||| ||||| |||||||||||||| Sbjct: 120423 tacttttgccacatgtgctcgctgatcgtgaggccggagatgggcatcgaggaggtgaag 120364 Query: 236 tgcccgcactgccgttccggattcgtggaggagatgg 272 ||||| ||||||| ||||| |||||||| ||||||| Sbjct: 120363 tgcccccactgccactccggcttcgtggaagagatgg 120327 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 380 cctatcctcatggacctcctcggcgtctc 408 ||||| ||||| ||||||||||||||||| Sbjct: 120210 cctatgctcatagacctcctcggcgtctc 120182
>dbj|AK068144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135G08, full insert sequence Length = 1362 Score = 75.8 bits (38), Expect = 2e-10 Identities = 114/138 (82%), Gaps = 6/138 (4%) Strand = Plus / Plus Query: 426 gcgacctcgcggccttggcgcgaagacagtaccgccacctcgccttcttgcagctcctga 485 |||||||||| ||||| ||||| || ||||||||| || |||||||| ||||||| || | Sbjct: 592 gcgacctcgccgccttcgcgcggaggcagtaccgcaacatcgccttcctgcagctgctca 651 Query: 486 acgcgctccaggaaggcgatgccgatgccgacggcgacgcgcc---agactcggggctcg 542 |||||||||||| ||| | ||| |||| ||||||| |||| |||||||||| || Sbjct: 652 gcgcgctccagga---cgacgacgaagccggcggcgacacgcccggcgactcggggcgcg 708 Query: 543 agcggctcgtgctggtta 560 |||||||||| ||||||| Sbjct: 709 agcggctcgttctggtta 726 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 176 tactattgctacatgtgctctgtaatcgtaagcccagagctgggcgtcgaggaggtgaag 235 |||| |||| |||||||||| | ||||| || || ||| ||||| |||||||||||||| Sbjct: 318 tacttttgccacatgtgctcgctgatcgtgaggccggagatgggcatcgaggaggtgaag 377 Query: 236 tgcccgcactgccgttccggattcgtggaggagatgg 272 ||||| ||||||| ||||| |||||||| ||||||| Sbjct: 378 tgcccccactgccactccggcttcgtggaagagatgg 414 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 380 cctatcctcatggacctcctcggcgtctc 408 ||||| ||||| ||||||||||||||||| Sbjct: 531 cctatgctcatagacctcctcggcgtctc 559
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 501 gcgatgccgatgccgacggcgacg 524 |||||||||||||||||||||||| Sbjct: 6844654 gcgatgccgatgccgacggcgacg 6844631 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 cgatgccgatgccgacggcga 522 ||||||||||||||||||||| Sbjct: 4180337 cgatgccgatgccgacggcga 4180317
>ref|NM_188532.1| Oryza sativa (japonica cultivar-group), Ozsa8201 predicted mRNA Length = 1413 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 501 gcgatgccgatgccgacggcgacgcg 526 |||||||||||||||||| ||||||| Sbjct: 111 gcgatgccgatgccgacgccgacgcg 136
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 gacttctagatactattgctac 187 |||||||||||||||||||||| Sbjct: 40927699 gacttctagatactattgctac 40927720 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 501 gcgatgccgatgccgacggcgacgcg 526 |||||||||||||||||| ||||||| Sbjct: 6820294 gcgatgccgatgccgacgccgacgcg 6820269 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 42898356 ggcgatgccgatgccgacgccgacg 42898380
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 gacttctagatactattgctac 187 |||||||||||||||||||||| Sbjct: 139805 gacttctagatactattgctac 139826
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 gacttctagatactattgctac 187 |||||||||||||||||||||| Sbjct: 56124 gacttctagatactattgctac 56145
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 501 gcgatgccgatgccgacggcgacgcg 526 |||||||||||||||||| ||||||| Sbjct: 172446 gcgatgccgatgccgacgccgacgcg 172421
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 501 gcgatgccgatgccgacggcgacgcg 526 |||||||||||||||||| ||||||| Sbjct: 102355 gcgatgccgatgccgacgccgacgcg 102330
>ref|XM_483510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1197 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 984 ggcgatgccgatgccgacgccgacg 960
>ref|NM_184913.1| Oryza sativa (japonica cultivar-group), mRNA Length = 510 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 355 cctcctcggcgtctcctacaggctc 331
>ref|NM_184906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1020 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 303 cctcctcggcgtctcctaccggctc 327
>ref|NM_189467.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 846 ggcgatgccgatgccgacgccgacg 822
>ref|XM_543754.2| PREDICTED: Canis familiaris similar to Inositol 1,4,5-trisphosphate receptor type 2 (Type 2 inositol 1,4,5-trisphosphate receptor) (Type 2 InsP3 receptor) (IP3 receptor isoform 2) (InsP3R2), transcript variant 1 (LOC486628), mRNA Length = 8364 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttctcatagctgctgctcttc 113 ||||||||||||||||||||| Sbjct: 3314 ttctcatagctgctgctcttc 3294
>ref|XM_847306.1| PREDICTED: Canis familiaris similar to Inositol 1,4,5-trisphosphate receptor type 2 (Type 2 inositol 1,4,5-trisphosphate receptor) (Type 2 InsP3 receptor) (IP3 receptor isoform 2) (InsP3R2), transcript variant 3 (LOC486628), mRNA Length = 8463 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttctcatagctgctgctcttc 113 ||||||||||||||||||||| Sbjct: 3413 ttctcatagctgctgctcttc 3393
>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome Length = 63882 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 gccgcaggggccggcccagat 337 ||||||||||||||||||||| Sbjct: 53566 gccgcaggggccggcccagat 53586
>gb|AY302058.1| Oryza sativa (japonica cultivar-group) zinc transporter (ZIP1) mRNA, complete cds Length = 1343 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 899 ggcgatgccgatgccgacgccgacg 875
>gb|AC044860.11| Homo sapiens chromosome 15, clone RP11-561C5, complete sequence Length = 233775 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 catgcacatgccagagcgaggagcc 604 ||||||||||||||||| ||||||| Sbjct: 8100 catgcacatgccagagccaggagcc 8076
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 acggccggcggagcagcaacg 296 ||||||||||||||||||||| Sbjct: 33247 acggccggcggagcagcaacg 33227
>gb|AC104046.2| Homo sapiens chromosome 15, clone CTD-2262B20, complete sequence Length = 104794 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 catgcacatgccagagcgaggagcc 604 ||||||||||||||||| ||||||| Sbjct: 98199 catgcacatgccagagccaggagcc 98175
>gb|AF402600.1| Bos taurus inositol 1,4,5-trisphosphate receptor type 2 mRNA, complete cds Length = 8275 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttctcatagctgctgctcttc 113 ||||||||||||||||||||| Sbjct: 3426 ttctcatagctgctgctcttc 3406
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 acggccggcggagcagcaacg 296 ||||||||||||||||||||| Sbjct: 24144022 acggccggcggagcagcaacg 24144002
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 26639702 ggcgatgccgatgccgacgccgacg 26639678
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 92090 ggcgatgccgatgccgacgccgacg 92114
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 51229 ggcgatgccgatgccgacgccgacg 51205
>ref|NM_174369.2| Bos taurus inositol 1,4,5-triphosphate receptor, type 2 (ITPR2), mRNA Length = 8275 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttctcatagctgctgctcttc 113 ||||||||||||||||||||| Sbjct: 3426 ttctcatagctgctgctcttc 3406
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacggcgacg 524 ||||||||||||||||||| ||||| Sbjct: 188569 ggcgatgccgatgccgacgccgacg 188545
>dbj|AK111199.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-E01, full insert sequence Length = 2351 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 502 cgatgccgatgccgacggcgacgcg 526 ||||||||| ||||||||||||||| Sbjct: 651 cgatgccgacgccgacggcgacgcg 675
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 tgccgatgccgacggcgacgc 525 ||||||||||||||||||||| Sbjct: 2035999 tgccgatgccgacggcgacgc 2035979
>gb|AC139760.5| Mus musculus BAC clone RP23-346P9 from chromosome 10, complete sequence Length = 184319 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 tcttcttcttgcctcccactt 38 ||||||||||||||||||||| Sbjct: 64840 tcttcttcttgcctcccactt 64860
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 98075 cctcctcggcgtctcctacaggctc 98099 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 cctcctcggcgtctcctacgggctc 418 ||||||||||||||||||| ||||| Sbjct: 67236 cctcctcggcgtctcctaccggctc 67212
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 cgatgccgatgccgacggcgacgc 525 ||||||||||||||||| |||||| Sbjct: 144445 cgatgccgatgccgacgccgacgc 144468
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggccggcggagcagcaacg 296 |||||||||||||||||||| Sbjct: 86333 cggccggcggagcagcaacg 86352
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gccgatgccgacggcgacgc 525 |||||||||||||||||||| Sbjct: 215560 gccgatgccgacggcgacgc 215541
>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05, complete sequence Length = 107407 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 271 ggccgacggccggcggagcagcaacgcc 298 |||||||||||| |||||||||| |||| Sbjct: 60525 ggccgacggccgccggagcagcatcgcc 60498
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 cgatgccgacggcgacgcgc 527 |||||||||||||||||||| Sbjct: 147602 cgatgccgacggcgacgcgc 147621
>ref|XM_323374.1| Neurospora crassa OR74A predicted protein (NCU04056.1) partial mRNA Length = 246 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 cgatgccgatgccgacggcgacgc 525 ||||||||||||||||| |||||| Sbjct: 201 cgatgccgatgccgacgccgacgc 224
>ref|XM_952578.1| Neurospora crassa OR74A hypothetical protein (NCU04056.1) partial mRNA Length = 246 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 cgatgccgatgccgacggcgacgc 525 ||||||||||||||||| |||||| Sbjct: 201 cgatgccgatgccgacgccgacgc 224
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gccgatgccgacggcgacgc 525 |||||||||||||||||||| Sbjct: 897849 gccgatgccgacggcgacgc 897830
>gb|AE009304.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 74 of 187 of the complete sequence Length = 11040 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ctgctgctcttcatcgagga 121 |||||||||||||||||||| Sbjct: 8344 ctgctgctcttcatcgagga 8363
>gb|AE008309.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 113 of 187 of the complete sequence Length = 11573 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctgctgctcttcatcgagga 121 |||||||||||||||||||| Sbjct: 10790 ctgctgctcttcatcgagga 10771
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 317 gccgcaggggccggcccagatgacgctg 344 ||||||||||||||| ||||||| |||| Sbjct: 2755310 gccgcaggggccggcacagatgaagctg 2755337
>emb|BX897679.1| Neurospora crassa DNA linkage group VI BAC clone B2C22 Length = 66491 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 cgatgccgatgccgacggcgacgc 525 ||||||||||||||||| |||||| Sbjct: 34701 cgatgccgatgccgacgccgacgc 34678
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 cgcgctccaggaaggcgatgccga 510 |||||||||||||||||| ||||| Sbjct: 209751 cgcgctccaggaaggcgacgccga 209728
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 cgcgctccaggaaggcgatgccga 510 |||||||||||||||||| ||||| Sbjct: 207961 cgcgctccaggaaggcgacgccga 207938
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 cgcgctccaggaaggcgatgccga 510 |||||||||||||||||| ||||| Sbjct: 58612 cgcgctccaggaaggcgacgccga 58635
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gccgatgccgacggcgacgc 525 |||||||||||||||||||| Sbjct: 740232 gccgatgccgacggcgacgc 740213
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 416 ctcgacggtggcgacctcgcggcc 439 |||||||||| ||||||||||||| Sbjct: 190804 ctcgacggtgacgacctcgcggcc 190781
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gaaggcgatgccgatgccga 516 |||||||||||||||||||| Sbjct: 503040 gaaggcgatgccgatgccga 503021
>gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex BAC MMU188J04, complete sequence Length = 166821 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ctattgctacatgtgctctg 197 |||||||||||||||||||| Sbjct: 116451 ctattgctacatgtgctctg 116432
>gb|AC148666.1| Macaca mulatta Major Histocompatibility Complex BAC MMU024N14, complete sequence Length = 174992 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ctattgctacatgtgctctg 197 |||||||||||||||||||| Sbjct: 65554 ctattgctacatgtgctctg 65535
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggccggcggagcagcaacg 296 |||||||||||||||||||| Sbjct: 4304823 cggccggcggagcagcaacg 4304842
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 271 ggccgacggccggcggagcagcaacgcc 298 |||||||||||| |||||||||| |||| Sbjct: 20326935 ggccgacggccgccggagcagcatcgcc 20326908
>ref|XM_394278.2| PREDICTED: Apis mellifera similar to MITF (LOC410802), mRNA Length = 2313 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 cgatgccgatgccgacggcgacgc 525 ||||||||||||||||| |||||| Sbjct: 624 cgatgccgatgccgacgtcgacgc 601
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctattgctacatgtgctctg 197 |||||||||||||||||||| Sbjct: 273528 ctattgctacatgtgctctg 273547
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gaaggcgatgccgatgccga 516 |||||||||||||||||||| Sbjct: 211306 gaaggcgatgccgatgccga 211287
>ref|NM_211621.1| Eremothecium gossypii AGL108Cp (AGL108C), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 gaaggcgatgccgatgccga 516 |||||||||||||||||||| Sbjct: 256 gaaggcgatgccgatgccga 275
>gb|AY103622.1| Zea mays PCO084888 mRNA sequence Length = 2801 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 497 gaaggcgatgccgatgccgacggcgacg 524 |||||||||||||||| || |||||||| Sbjct: 159 gaaggcgatgccgatgacggcggcgacg 132
>gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, complete sequence Length = 182487 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 actattgctacatgtgctct 196 |||||||||||||||||||| Sbjct: 131142 actattgctacatgtgctct 131123
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggccggcggagcagcaacg 296 |||||||||||||||||||| Sbjct: 4313517 cggccggcggagcagcaacg 4313536
>gb|DQ138816.1| Drosophila yakuba strain T33 CG7093 gene, partial cds Length = 2640 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacgg 519 |||||||||||||||||||| Sbjct: 668 ggcgatgccgatgccgacgg 649
>gb|DQ138815.1| Drosophila yakuba strain Tai18 CG7093 gene, partial cds Length = 2637 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ggcgatgccgatgccgacgg 519 |||||||||||||||||||| Sbjct: 668 ggcgatgccgatgccgacgg 649 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,861,355 Number of Sequences: 3902068 Number of extensions: 4861355 Number of successful extensions: 84935 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83128 Number of HSP's gapped (non-prelim): 1807 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
