ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3m07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466651.1| Oryza sativa (japonica cultivar-group), mRNA 127 4e-26
2dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
3gb|AY110168.1| Zea mays CL28548_1 mRNA sequence 119 1e-23
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
6dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
8emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 100 1e-17
9ref|XM_473035.1| Oryza sativa (japonica cultivar-group), predic... 96 2e-16
10dbj|AK068782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
11gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence 76 1e-10
12gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 76 1e-10
13ref|XM_474473.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
14emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 56 1e-04
15dbj|AK100077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
16dbj|AK069073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
17ref|XM_453003.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C18007g ... 46 0.13
18gb|AC144913.13| Mus musculus chromosome 15, clone RP24-203A19, c... 46 0.13
19gb|AC161172.4| Mus musculus chromosome 15, clone RP24-265I13, co... 46 0.13
20emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 46 0.13
21dbj|AK120177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
22emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on ch... 44 0.51
23ref|XM_463768.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
24gb|BT018368.1| Zea mays clone EL01N0302C07.d mRNA sequence 42 2.0
25gb|AC073320.8| Homo sapiens BAC clone RP11-306G20 from 7, comple... 42 2.0
26gb|BC063047.1| Mus musculus transcription factor E3, mRNA (cDNA ... 42 2.0
27gb|BC056358.1| Mus musculus transcription factor E3, mRNA (cDNA ... 42 2.0
28dbj|AK147405.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 42 2.0
29dbj|AK145029.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 42 2.0
30dbj|AK153051.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 2.0
31dbj|AK145832.1| Mus musculus 11 days pregnant adult female place... 42 2.0
32dbj|AK159162.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 42 2.0
33dbj|AK144751.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 42 2.0
34dbj|AK144657.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 42 2.0
35dbj|AK154690.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.0
36dbj|AK151447.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 2.0
37dbj|AK150372.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 2.0
38dbj|AK152221.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 2.0
39gb|S57655.1| Transcription factor E3-L {activation domain} [mice... 42 2.0
40gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc... 42 2.0
41gb|AC087071.2|AC087071 Homo sapiens chromosome 7 clone RP11-775D... 42 2.0
42gb|AC073195.5| Homo sapiens BAC clone RP11-214N9 from 2, complet... 42 2.0
43gb|S76673.1|S76673 Mus sp. transcriptional factor E3 mRNA, parti... 42 2.0
44dbj|AK220116.1| Mus musculus cDNA, clone:Y2G0150N17, strand:minu... 42 2.0
45dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
46dbj|AK102264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
47gb|AC156390.3| Mus musculus 10 BAC RP24-280O23 (Roswell Park Can... 42 2.0
48gb|AY104875.1| Zea mays PCO067032 mRNA sequence 42 2.0
49dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
50emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chr... 42 2.0
51ref|XM_595298.2| PREDICTED: Bos taurus similar to Protein C22orf... 40 8.0
52gb|AC098683.18| Mus musculus strain 129/Sv clone ct7-128f23 map ... 40 8.0
53ref|XM_801429.1| Trypanosoma cruzi strain CL Brener DNA repair p... 40 8.0
54ref|XM_799670.1| Trypanosoma cruzi strain CL Brener DNA repair p... 40 8.0
55emb|BX601643.6| Zebrafish DNA sequence from clone DKEY-32B18 in ... 40 8.0
56gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 8.0
57gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, comple... 40 8.0
58gb|AC118683.10| Mus musculus chromosome 15, clone RP23-442M5, co... 40 8.0
59gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome ... 40 8.0
60emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in... 40 8.0
61gb|AY112372.1| Zea mays CL6272_1 mRNA sequence 40 8.0 
>ref|XM_466651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2967

 Score =  127 bits (64), Expect = 4e-26
 Identities = 151/180 (83%)
 Strand = Plus / Plus

                                                                        
Query: 16   gaagctaagaaggcatatatggctgctagagaggagtcagacgacaccaccgaggttgct 75
            ||||||||||| || || |||||||||||||| ||||| ||| |  |  | ||||||| |
Sbjct: 2235 gaagctaagaaagcttacatggctgctagagaagagtcggacaaggctgctgaggttgat 2294

                                                                        
Query: 76   tcagaggaaaaagtctcgtgagcactgattgacaaggttgatgccatgcttcagaaatta 135
              ||| ||||| ||||| |  || |||||||| ||||||||||| ||||| |||||||||
Sbjct: 2295 gaagaagaaaaggtctcatcggcgctgattgagaaggttgatgctatgctccagaaatta 2354

                                                                        
Query: 136  gaaaaggagattgatgatgtggatgcacaaatcggaaactgctggcaactgcttgatagg 195
            ||||||||||||||||| |||||||||||||| |||||| | |||||| | |||||||||
Sbjct: 2355 gaaaaggagattgatgacgtggatgcacaaattggaaaccgatggcaaattcttgatagg 2414
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>dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B16, full
            insert sequence
          Length = 2967

 Score =  127 bits (64), Expect = 4e-26
 Identities = 151/180 (83%)
 Strand = Plus / Plus

                                                                        
Query: 16   gaagctaagaaggcatatatggctgctagagaggagtcagacgacaccaccgaggttgct 75
            ||||||||||| || || |||||||||||||| ||||| ||| |  |  | ||||||| |
Sbjct: 2235 gaagctaagaaagcttacatggctgctagagaagagtcggacaaggctgctgaggttgat 2294

                                                                        
Query: 76   tcagaggaaaaagtctcgtgagcactgattgacaaggttgatgccatgcttcagaaatta 135
              ||| ||||| ||||| |  || |||||||| ||||||||||| ||||| |||||||||
Sbjct: 2295 gaagaagaaaaggtctcatcggcgctgattgagaaggttgatgctatgctccagaaatta 2354

                                                                        
Query: 136  gaaaaggagattgatgatgtggatgcacaaatcggaaactgctggcaactgcttgatagg 195
            ||||||||||||||||| |||||||||||||| |||||| | |||||| | |||||||||
Sbjct: 2355 gaaaaggagattgatgacgtggatgcacaaattggaaaccgatggcaaattcttgatagg 2414
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>gb|AY110168.1| Zea mays CL28548_1 mRNA sequence
          Length = 1716

 Score =  119 bits (60), Expect = 1e-23
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 67  gaggttgcttcagaggaaaaagtctcgtgagcactgattgacaaggttgatgccatgctt 126
           |||| |||| |||| ||||| |||||||  ||  ||||||| ||||||||||| ||||||
Sbjct: 783 gaggctgctgcagaagaaaaggtctcgtcggcgttgattgagaaggttgatgctatgctt 724

                                                                       
Query: 127 cagaaattagaaaaggagattgatgatgtggatgcacaaatcggaaactgctggcaactg 186
           ||  ||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct: 723 caagaattagaaaaggagattgatgatgtggatgcacaaattggaaaccgttggcagctg 664

               
Query: 187 cttg 190
           ||||
Sbjct: 663 cttg 660
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                            
Query: 110      aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
                |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 23887129 aggttgatgctatgctccagaaattagaaaaggagattgatgacgtggatgcacaaattg 23887070

                                          
Query: 170      gaaactgctggcaactgcttgatagg 195
                ||||| | |||||| | |||||||||
Sbjct: 23887069 gaaaccgatggcaaattcttgatagg 23887044



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 16       gaagctaagaaggcatatatggctgctagagaggagtc 53
                ||||||||||| || || |||||||||||||| |||||
Sbjct: 23887778 gaagctaagaaagcttacatggctgctagagaagagtc 23887741



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 212   aaggccaagatgaaggagcaatcatcaag 240
             |||||||||  ||||||||||||||||||
Sbjct: 16007 aaggccaagcggaaggagcaatcatcaag 16035
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                          
Query: 110    aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
              |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 108795 aggttgatgctatgctccagaaattagaaaaggagattgatgacgtggatgcacaaattg 108736

                                        
Query: 170    gaaactgctggcaactgcttgatagg 195
              ||||| | |||||| | |||||||||
Sbjct: 108735 gaaaccgatggcaaattcttgatagg 108710



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 16     gaagctaagaaggcatatatggctgctagagaggagtc 53
              ||||||||||| || || |||||||||||||| |||||
Sbjct: 109444 gaagctaagaaagcttacatggctgctagagaagagtc 109407
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                         
Query: 110   aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
             |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 21093 aggttgatgctatgctccagaaattagaaaaggagattgatgacgtggatgcacaaattg 21034

                                       
Query: 170   gaaactgctggcaactgcttgatagg 195
             ||||| | |||||| | |||||||||
Sbjct: 21033 gaaaccgatggcaaattcttgatagg 21008



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 16    gaagctaagaaggcatatatggctgctagagaggagtc 53
             ||||||||||| || || |||||||||||||| |||||
Sbjct: 21742 gaagctaagaaagcttacatggctgctagagaagagtc 21705
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                            
Query: 110      aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
                |||||||||| ||||||||||||||||| || |||||||||||||| ||||||| ||| |
Sbjct: 24823094 aggttgatgcaatgcttcagaaattagagaaagagattgatgatgttgatgcacgaatag 24823035

                                          
Query: 170      gaaactgctggcaactgcttgatagg 195
                | ||| ||||||| ||||||||||||
Sbjct: 24823034 gcaaccgctggcagctgcttgatagg 24823009



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 323      ttgatcctgcaagccaatgaagattcagacgacgaggttgctctggaggcttgtga 378
                ||||| |||||||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct: 35407872 ttgatgctgcaagctaataaagattcagatgatgaagttgctctcgaggcttgtga 35407927



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 506      gaatcacttgctgatgctgag 526
                |||||||||||||||||||||
Sbjct: 35408364 gaatcacttgctgatgctgag 35408384
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 110   aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
             |||||||||| ||||||||||||||||| || |||||||||||||| ||||||| ||| |
Sbjct: 84810 aggttgatgcaatgcttcagaaattagagaaagagattgatgatgttgatgcacgaatag 84751

                                       
Query: 170   gaaactgctggcaactgcttgatagg 195
             | ||| ||||||| ||||||||||||
Sbjct: 84750 gcaaccgctggcagctgcttgatagg 84725
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>ref|XM_473035.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2262

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                        
Query: 111  ggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcgg 170
            ||||||||| ||||||||||||||||| || |||||||||||||| ||||||| ||| ||
Sbjct: 1977 ggttgatgcaatgcttcagaaattagagaaagagattgatgatgttgatgcacgaatagg 2036

                                    
Query: 171  aaactgctggcaactgcttgatag 194
             ||| ||||||| |||||||||||
Sbjct: 2037 caaccgctggcagctgcttgatag 2060
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>dbj|AK068782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159H18, full
            insert sequence
          Length = 2792

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 111  ggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcgg 170
            ||||||||| ||||||||||||||||| || ||||| |||||||| ||||||| ||| ||
Sbjct: 2216 ggttgatgcaatgcttcagaaattagagaaagagatagatgatgttgatgcacgaatagg 2275

                                    
Query: 171  aaactgctggcaactgcttgatag 194
             ||| ||||||| |||||||||||
Sbjct: 2276 caaccgctggcagctgcttgatag 2299
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>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
          Length = 282600

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                         
Query: 110   aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
             |||||||||| |||||||| || ||||||||||||||||||||||| ||||| | ||| |
Sbjct: 46823 aggttgatgctatgcttcaaaagttagaaaaggagattgatgatgttgatgctcgaattg 46882

                                       
Query: 170   gaaactgctggcaactgcttgatagg 195
             | ||  ||||||| ||||| ||||||
Sbjct: 46883 gcaatcgctggcagctgctggatagg 46908
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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                         
Query: 110   aggttgatgccatgcttcagaaattagaaaaggagattgatgatgtggatgcacaaatcg 169
             |||||||||| |||||||| || ||||||||||||||||||||||| ||||| | ||| |
Sbjct: 18898 aggttgatgctatgcttcaaaagttagaaaaggagattgatgatgttgatgctcgaattg 18957

                                       
Query: 170   gaaactgctggcaactgcttgatagg 195
             | ||  ||||||| ||||| ||||||
Sbjct: 18958 gcaatcgctggcagctgctggatagg 18983
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>ref|XM_474473.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3234

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 323 ttgatcctgcaagccaatgaagattcagacgacgaggttgctctggaggcttgtga 378
           ||||| |||||||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct: 853 ttgatgctgcaagctaataaagattcagatgatgaagttgctctcgaggcttgtga 908



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 506  gaatcacttgctgatgctgag 526
            |||||||||||||||||||||
Sbjct: 1018 gaatcacttgctgatgctgag 1038
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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
             complete sequence
          Length = 123272

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 323   ttgatcctgcaagccaatgaagattcagacgacgaggttgctctggaggcttgtga 378
             ||||| |||||||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct: 32675 ttgatgctgcaagctaataaagattcagatgatgaagttgctctcgaggcttgtga 32730



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 506   gaatcacttgctgatgctgag 526
             |||||||||||||||||||||
Sbjct: 33167 gaatcacttgctgatgctgag 33187
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>dbj|AK100077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F11, full
           insert sequence
          Length = 3436

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 323 ttgatcctgcaagccaatgaagattcagacgacgaggttgctctggaggcttgtga 378
           ||||| |||||||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct: 890 ttgatgctgcaagctaataaagattcagatgatgaagttgctctcgaggcttgtga 945



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 506  gaatcacttgctgatgctgag 526
            |||||||||||||||||||||
Sbjct: 1055 gaatcacttgctgatgctgag 1075
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>dbj|AK069073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005B05, full
           insert sequence
          Length = 3763

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 323 ttgatcctgcaagccaatgaagattcagacgacgaggttgctctggaggcttgtga 378
           ||||| |||||||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct: 919 ttgatgctgcaagctaataaagattcagatgatgaagttgctctcgaggcttgtga 974



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 506  gaatcacttgctgatgctgag 526
            |||||||||||||||||||||
Sbjct: 1084 gaatcacttgctgatgctgag 1104
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>ref|XM_453003.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C18007g predicted mRNA
          Length = 1707

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 340 tgaagattcagacgacgaggttg 362
           |||||||||||||||||||||||
Sbjct: 954 tgaagattcagacgacgaggttg 976
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>gb|AC144913.13| Mus musculus chromosome 15, clone RP24-203A19, complete sequence
          Length = 167647

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 554    tggaaggagcaggaagctgctgt 576
              |||||||||||||||||||||||
Sbjct: 125361 tggaaggagcaggaagctgctgt 125339
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>gb|AC161172.4| Mus musculus chromosome 15, clone RP24-265I13, complete sequence
          Length = 181782

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 554   tggaaggagcaggaagctgctgt 576
             |||||||||||||||||||||||
Sbjct: 95671 tggaaggagcaggaagctgctgt 95693
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 340     tgaagattcagacgacgaggttg 362
               |||||||||||||||||||||||
Sbjct: 1600721 tgaagattcagacgacgaggttg 1600699
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>dbj|AK120177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033F11, full
            insert sequence
          Length = 2323

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 16   gaagctaagaaggcatatatggctgctagagaggagtc 53
            ||||||||||| || || |||||||||||||| |||||
Sbjct: 2233 gaagctaagaaagcttacatggctgctagagaagagtc 2270
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>emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on chromosome 11, complete
             sequence
          Length = 149561

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 252   tcaggtggtggaatgcctgcct 273
             ||||||||||||||||||||||
Sbjct: 17654 tcaggtggtggaatgcctgcct 17675
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>ref|XM_463768.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1535

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 212 aaggccaagatgaaggagcaatcatcaag 240
           |||||||||  ||||||||||||||||||
Sbjct: 896 aaggccaagcggaaggagcaatcatcaag 924
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>gb|BT018368.1| Zea mays clone EL01N0302C07.d mRNA sequence
          Length = 1451

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 212 aaggccaagatgaaggagcaatcatcaag 240
           |||||||||| |||||||||||| |||||
Sbjct: 617 aaggccaagaggaaggagcaatcgtcaag 589
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>gb|AC073320.8| Homo sapiens BAC clone RP11-306G20 from 7, complete sequence
          Length = 185273

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    tagagaggagtcagacgacac 62
             |||||||||||||||||||||
Sbjct: 38380 tagagaggagtcagacgacac 38400
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>gb|BC063047.1| Mus musculus transcription factor E3, mRNA (cDNA clone MGC:66495
            IMAGE:6813486), complete cds
          Length = 3281

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1040 agaaaaggagattgatgatgt 1060
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>gb|BC056358.1| Mus musculus transcription factor E3, mRNA (cDNA clone MGC:73498
            IMAGE:6813486), complete cds
          Length = 3281

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1040 agaaaaggagattgatgatgt 1060
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>dbj|AK147405.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1034D24
            product:transcription factor E3, full insert sequence
          Length = 6330

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1507 agaaaaggagattgatgatgt 1527
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>dbj|AK145029.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length
            enriched library, clone:G830027O13 product:transcription
            factor E3, full insert sequence
          Length = 3393

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1172 agaaaaggagattgatgatgt 1192
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>dbj|AK153051.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830120B11 product:transcription
           factor E3, full insert sequence
          Length = 3023

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 804 agaaaaggagattgatgatgt 824
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>dbj|AK145832.1| Mus musculus 11 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:I530004C05
            product:transcription factor E3, full insert sequence
          Length = 3239

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1017 agaaaaggagattgatgatgt 1037
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>dbj|AK159162.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420006E04 product:transcription factor
           E3, full insert sequence
          Length = 3153

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 933 agaaaaggagattgatgatgt 953
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>dbj|AK144751.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
            library, clone:G730029H06 product:transcription factor
            E3, full insert sequence
          Length = 3245

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1020 agaaaaggagattgatgatgt 1040
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>dbj|AK144657.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
            library, clone:G730020J02 product:transcription factor
            E3, full insert sequence
          Length = 3235

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1017 agaaaaggagattgatgatgt 1037
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>dbj|AK154690.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630103H13
            product:transcription factor E3, full insert sequence
          Length = 4727

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  agaaaaggagattgatgatgt 155
            |||||||||||||||||||||
Sbjct: 1603 agaaaaggagattgatgatgt 1623
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>dbj|AK151447.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830030D21 product:transcription
           factor E3, full insert sequence
          Length = 2944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 723 agaaaaggagattgatgatgt 743
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>dbj|AK150372.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830005O21 product:transcription
           factor E3, full insert sequence
          Length = 3023

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 804 agaaaaggagattgatgatgt 824
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>dbj|AK152221.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830055K06 product:transcription
           factor E3, full insert sequence
          Length = 2944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 723 agaaaaggagattgatgatgt 743
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>gb|S57655.1| Transcription factor E3-L {activation domain} [mice, mRNA Partial,
           126 nt]
          Length = 126

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 3   agaaaaggagattgatgatgt 23
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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    ggtggtggaatgcctgcctgg 275
              |||||||||||||||||||||
Sbjct: 169428 ggtggtggaatgcctgcctgg 169408
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>gb|AC087071.2|AC087071 Homo sapiens chromosome 7 clone RP11-775D22, complete sequence
          Length = 183353

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    tagagaggagtcagacgacac 62
             |||||||||||||||||||||
Sbjct: 41527 tagagaggagtcagacgacac 41507
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>gb|AC073195.5| Homo sapiens BAC clone RP11-214N9 from 2, complete sequence
          Length = 98835

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   catatgttcaagttgttaatg 320
             |||||||||||||||||||||
Sbjct: 57712 catatgttcaagttgttaatg 57692
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>gb|S76673.1|S76673 Mus sp. transcriptional factor E3 mRNA, partial cds
          Length = 2469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 390 agaaaaggagattgatgatgt 410
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>dbj|AK220116.1| Mus musculus cDNA, clone:Y2G0150N17, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000000136, based on BLAT search
          Length = 399

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agaaaaggagattgatgatgt 155
           |||||||||||||||||||||
Sbjct: 33  agaaaaggagattgatgatgt 53
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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 212   aaggccaagatgaaggagcaatcatcaag 240
             |||||||||  ||||||||||||||||||
Sbjct: 10616 aaggccaagcggaaggagcaatcatcaag 10644
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>dbj|AK102264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088M02, full
           insert sequence
          Length = 1534

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 212 aaggccaagatgaaggagcaatcatcaag 240
           |||||||||  ||||||||||||||||||
Sbjct: 895 aaggccaagcggaaggagcaatcatcaag 923
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>gb|AC156390.3| Mus musculus 10 BAC RP24-280O23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 158038

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 255    ggtggtggaatgcctgcctgg 275
              |||||||||||||||||||||
Sbjct: 106723 ggtggtggaatgcctgcctgg 106743
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>gb|AY104875.1| Zea mays PCO067032 mRNA sequence
          Length = 1619

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 212 aaggccaagatgaaggagcaatcatcaag 240
           |||||||||| |||||||||||| |||||
Sbjct: 935 aaggccaagaggaaggagcaatcgtcaag 963
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>dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             fosmid clone:OSJNOa183H18
          Length = 38313

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 212   aaggccaagatgaaggagcaatcatcaag 240
             |||||||||  ||||||||||||||||||
Sbjct: 16007 aaggccaagcggaaggagcaatcatcaag 16035
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>emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chromosome 11, complete
             sequence
          Length = 148846

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 553   ctggaaggagcaggaagctgc 573
             |||||||||||||||||||||
Sbjct: 52117 ctggaaggagcaggaagctgc 52097
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>ref|XM_595298.2| PREDICTED: Bos taurus similar to Protein C22orf13 homolog
            (LOC517135), mRNA
          Length = 2834

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 555  ggaaggagcaggaagctgct 574
            ||||||||||||||||||||
Sbjct: 1604 ggaaggagcaggaagctgct 1585
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>gb|AC098683.18| Mus musculus strain 129/Sv clone ct7-128f23 map 5, complete sequence
          Length = 112727

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    aggttgctctggaggcttgt 376
              ||||||||||||||||||||
Sbjct: 109087 aggttgctctggaggcttgt 109068
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>ref|XM_801429.1| Trypanosoma cruzi strain CL Brener DNA repair protein
           (Tc00.1047053510065.20) partial mRNA
          Length = 1824

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  gttgcttcagaggaaaaagtctcg 93
           ||||||||||||||||| ||||||
Sbjct: 931 gttgcttcagaggaaaaggtctcg 954
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>ref|XM_799670.1| Trypanosoma cruzi strain CL Brener DNA repair protein
           (Tc00.1047053510063.39) partial mRNA
          Length = 1393

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  gttgcttcagaggaaaaagtctcg 93
           ||||||||||||||||| ||||||
Sbjct: 500 gttgcttcagaggaaaaggtctcg 523
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>emb|BX601643.6| Zebrafish DNA sequence from clone DKEY-32B18 in linkage group 9, complete
              sequence
          Length = 165857

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    caatgaagattcagacgacg 356
              ||||||||||||||||||||
Sbjct: 111097 caatgaagattcagacgacg 111078
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    gtggatgcacaaatcggaaa 173
              ||||||||||||||||||||
Sbjct: 942497 gtggatgcacaaatcggaaa 942516
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>gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, complete sequence
          Length = 82078

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   aaaaggagattgatgatgtg 156
             ||||||||||||||||||||
Sbjct: 56344 aaaaggagattgatgatgtg 56325
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>gb|AC118683.10| Mus musculus chromosome 15, clone RP23-442M5, complete sequence
          Length = 194787

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    caggtgatgtctggaaggag 562
              ||||||||||||||||||||
Sbjct: 129912 caggtgatgtctggaaggag 129893
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>gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome 5, complete sequence
          Length = 235471

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    aggttgctctggaggcttgt 376
              ||||||||||||||||||||
Sbjct: 182430 aggttgctctggaggcttgt 182411
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>emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in linkage group 22,
             complete sequence
          Length = 203952

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ttgacaaggttgatgccatg 123
             ||||||||||||||||||||
Sbjct: 34802 ttgacaaggttgatgccatg 34821
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>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence
          Length = 1354

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 140 aggagattgatgatgtggatgcacaaatcggaaactgctggcaactgcttgatagg 195
           |||||||||||||||| ||||| | ||| || ||  ||||||| ||||| ||||||
Sbjct: 661 aggagattgatgatgttgatgctcgaattggcaatcgctggcagctgctggatagg 716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,300,170
Number of Sequences: 3902068
Number of extensions: 5300170
Number of successful extensions: 102001
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101749
Number of HSP's gapped (non-prelim): 252
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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