ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3m03 |
|---|---|
| Clone Library Name | barley_pub |
>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B| (IFB) Length = 450 Score = 33.9 bits (76), Expect = 0.48 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +3 Query: 483 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 653 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 92 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 150 Query: 654 DPLAHLKSAL 683 D +A L+ + Sbjct: 151 DEIASLRELI 160
>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein| (IF) Length = 575 Score = 33.9 bits (76), Expect = 0.48 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +3 Query: 483 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 653 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 93 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 151 Query: 654 DPLAHLKSAL 683 D +A L+ + Sbjct: 152 DEIASLRELI 161
>MCM8_HUMAN (Q9UJA3) DNA replication licensing factor MCM8 (Minichromosome| maintenance 8) Length = 840 Score = 33.5 bits (75), Expect = 0.63 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 417 VMLDDDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQ-IK 593 ++LD + HD + + + +R Q S A + +N QDS + ++ PL++ +K Sbjct: 592 ILLDTPNEHHDHLLSEHVIAIRAGKQRTISSATVARMNSQDSNTSVLEVVSEKPLSERLK 651 Query: 594 SVIDEALKPISEPL 635 V E + PI L Sbjct: 652 VVPGETIDPIPHQL 665
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -3 Query: 252 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 88 +TTS G G P +G LRP + P G G + + P GD KP Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545
>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 31.6 bits (70), Expect = 2.4 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = -2 Query: 370 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 191 R K +S FGT+ + V VD++ P K T F+ D++ + Sbjct: 70 RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126 Query: 190 GHGGRETLWER 158 G G ET W+R Sbjct: 127 GLPGEETYWQR 137
>ESSB_STAAW (Q7A1V2) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAU (P0C053) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAS (Q6GCI6) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAR (Q6GK25) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAN (Q7A7S0) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAM (Q99WU0) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>ESSB_STAAC (Q5HJ87) Protein essB| Length = 444 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +3 Query: 429 DDEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDE 608 DD D+ A+ KLN ++ N + N +++ K D QD L + K V DE Sbjct: 349 DDNDITKLALINKLNEIKNNGDLSN--------DKRSEETKKYNDKLQDILDKEKQVKDE 400 Query: 609 ALKPISEPLRSTAREDPL 662 K SE ++ A+++ L Sbjct: 401 KAK--SEEEKAKAKDEKL 416
>TTKB_DROME (P17789) Protein tramtrack, beta isoform (Tramtrack p69) (Repressor| protein fushi tarazu) Length = 643 Score = 30.0 bits (66), Expect = 6.9 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +3 Query: 438 DLHDAAIHQKLNPLRINVQVKNSHADASHINRQ 536 D +D + K NPL N H D SH+N Q Sbjct: 310 DEYDEPVEFKYNPLTDNSSPTQDHTDGSHLNEQ 342
>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 482 Score = 30.0 bits (66), Expect = 6.9 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +3 Query: 474 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 653 PLR+ + ++ A+ I+R+D+ K D L I+ + E +K I E LR+ A E Sbjct: 351 PLRVEIGPRDLEKGAAVISRRDTGEKVTAD-----LQGIEETLRELMKDILENLRTRAWE 405 Query: 654 DPLAHLKSA--LDEA 692 + ++ A L+EA Sbjct: 406 RMESEIREAETLEEA 420
>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)| Length = 483 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +3 Query: 474 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 653 P ++ + AS Q+ P+P + QDP A S + A KP EP + + Sbjct: 21 PAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP--EP---PSED 75 Query: 654 DPLAHLKSALDE 689 P A L+ L++ Sbjct: 76 VPSAPLRLTLED 87
>MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)| Length = 1875 Score = 30.0 bits (66), Expect = 6.9 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 432 DEDLHDAAIHQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEA 611 DE ++D ++ ++L +IN+ S Q K + +TT L Q S +DE+ Sbjct: 897 DETINDDSLRKELEKSKINLTDAYS---------QIKEYKDLYETTSQSLQQTNSKLDES 947 Query: 612 LKPISEPLRS-----TAREDPLAHLKSAL 683 K + +++ T+ ED ++ LK + Sbjct: 948 FKDFTNQIKNLTDEKTSLEDKISLLKEQM 976
>TCPD_RAT (Q7TPB1) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 538 Score = 29.6 bits (65), Expect = 9.1 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%) Frame = +3 Query: 240 GTSSSRSNMVTHLRGSMAMSTE------HTSL*IYLLFVPKLQVL-------LSLALMLT 380 G +S + +RGS + E H +L + V K ++ + LAL LT Sbjct: 377 GCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLT 436 Query: 381 SFSLTLMRMGD--VVMLDDDEDLHDAAIHQK--LNPLRINVQVKNSHADASHINRQDSRP 548 +S TL M V D ++ + + + LNP+ +++N HA + R Sbjct: 437 EYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK 496 Query: 549 KPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLK 674 + + ++ + Q V AL +E +RS + D + + + Sbjct: 497 GGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 538
>TCPD_MOUSE (P80315) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) (A45) Length = 538 Score = 29.6 bits (65), Expect = 9.1 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%) Frame = +3 Query: 240 GTSSSRSNMVTHLRGSMAMSTE------HTSL*IYLLFVPKLQVL-------LSLALMLT 380 G +S + +RGS + E H +L + V K ++ + LAL LT Sbjct: 377 GCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLT 436 Query: 381 SFSLTLMRMGD--VVMLDDDEDLHDAAIHQK--LNPLRINVQVKNSHADASHINRQDSRP 548 +S TL M V D ++ + + + LNP+ +++N HA + R Sbjct: 437 EYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK 496 Query: 549 KPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLK 674 + + ++ + Q V AL +E +RS + D + + + Sbjct: 497 GGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 538
>YOX1_YEAST (P34161) Homeobox protein YOX1| Length = 385 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Frame = +3 Query: 459 HQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVID----EALKPIS 626 H LN +K S A H+N Q PV+ + + ++ + ID +A +P+S Sbjct: 294 HHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVS 353 Query: 627 EPLRSTARE 653 P S R+ Sbjct: 354 NPSGSPKRK 362
>TCPD_CAEEL (P47208) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 540 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +3 Query: 468 LNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA 647 L+P+ +++N+HA+ + + R V D ++ + Q V A+K SE +RS Sbjct: 471 LSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSIL 530 Query: 648 REDPL 662 + D + Sbjct: 531 KIDDI 535
>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC| 2.5.1.48) (O-succinylhomoserine (thiol)-lyase) Length = 575 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +2 Query: 269 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 385 D+LK F G NGT+FTL A S++ KFG D + I Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,571,504 Number of Sequences: 219361 Number of extensions: 1670371 Number of successful extensions: 4937 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4936 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
