Clone Name | basd3m01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062O07, full insert sequence Length = 1416 Score = 248 bits (125), Expect = 2e-62 Identities = 267/313 (85%), Gaps = 1/313 (0%) Strand = Plus / Plus Query: 292 gtgtaaagatctggtcctggtagaggaccatgtcctggtcgaggatccagaggaagcggt 351 |||||| |||||||| || || |||||| |||| ||||||||||| |||||||| | Sbjct: 297 gtgtaaggatctggtgctcgtcgaggacgccgtccccgtcgaggatccggaggaagccgc 356 Query: 352 agcaactgcagcacttcaggaagaaatgagagtgcttttggcgtctgtccctgaaggtgc 411 ||||||||||||||||||||||||||||| || ||| | | || ||||| | ||||| Sbjct: 357 agcaactgcagcacttcaggaagaaatgaaagcgctcgttgaatccgtcccagttggtgc 416 Query: 412 tggggcatcatttactgcgatgcagctgcaggagctagagcagcaatctcgggtatacca 471 |||||| |||| || |||||||| || |||||||| |||||||||||||| || ||||| Sbjct: 417 tggggcggcattcaccgcgatgcaactacaggagcttgagcagcaatctcgtgtctacca 476 Query: 472 gtatatggctgccccgtgtgcccgtacctacccatctcgtcttccccatctggaagagtg 531 |||||||||||||| ||||||| || ||||| |||||||||||||| || |||||||||| Sbjct: 477 gtatatggctgccc-gtgtgcctgtgcctactcatctcgtcttcccaatatggaagagtg 535 Query: 532 ttaccggtgcatcctctgaaggcgcccagaattaccctacactgatgggattggcaactc 591 |||| |||||||| || |||||||||||||| ||||| ||| ||||||| |||||||| | Sbjct: 536 ttactggtgcatcttccgaaggcgcccagaagtacccgacattgatggggttggcaacac 595 Query: 592 tctgcttggactt 604 ||||||||||||| Sbjct: 596 tctgcttggactt 608 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 91 catggcggcggagggggaggacaagaa 117 |||||||||||||||||||| |||||| Sbjct: 84 catggcggcggagggggaggccaagaa 110
>gb|AY107970.1| Zea mays PCO085337 mRNA sequence Length = 729 Score = 238 bits (120), Expect = 2e-59 Identities = 244/284 (85%), Gaps = 1/284 (0%) Strand = Plus / Plus Query: 329 gtcgaggatccagaggaagcggtagcaactgcagcacttcaggaagaaatgagagtgctt 388 ||||||||||| |||||||| | |||||| |||||||| ||||||||||||| || |||| Sbjct: 394 gtcgaggatccggaggaagctgcagcaaccgcagcactccaggaagaaatgaaagcgctt 453 Query: 389 ttggcgtctgtccctgaaggtgctggggcatcatttactgcgatgcagctgcaggagcta 448 |||| || ||||||| |||||||| ||| |||| || || |||||||| ||||||||| Sbjct: 454 gtggcatcgatccctgatggtgctggagcagcattcacagccatgcagcttcaggagcta 513 Query: 449 gagcagcaatctcgggtataccagtatatggctgccccgtgtgcccgtacctacccatct 508 |||||||| || ||||| |||||||| ||||||| |||| || || || ||||| || || Sbjct: 514 gagcagcagtcccgggtgtaccagtacatggctg-cccgagtacctgtgcctactcacct 572 Query: 509 cgtcttccccatctggaagagtgttaccggtgcatcctctgaaggcgcccagaattaccc 568 ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 573 cgtcttcccggtatggaagagtgtgaccggtgcatcctctgaaggcgcccagaagtaccc 632 Query: 569 tacactgatgggattggcaactctctgcttggacttcgggaaga 612 ||| ||||||| || ||||| |||||||||||||| ||||||| Sbjct: 633 tactttgatgggcttagcaacgctctgcttggactttgggaaga 676 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 accatggcggcggagggggaggacaagaa 117 |||||| ||||||||||||||| |||||| Sbjct: 145 accatgacggcggagggggaggccaagaa 173
>tpg|BK004880.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 11 (GRF11) gene, complete cds Length = 6000 Score = 192 bits (97), Expect = 9e-46 Identities = 188/217 (86%), Gaps = 1/217 (0%) Strand = Plus / Plus Query: 352 agcaactgcagcacttcaggaagaaatgagagtgcttttggcgtctgtccctgaaggtgc 411 ||||||||||||||||||||||||||||| || ||| | | || ||||| | ||||| Sbjct: 2957 agcaactgcagcacttcaggaagaaatgaaagcgctcgttgaatccgtcccagttggtgc 3016 Query: 412 tggggcatcatttactgcgatgcagctgcaggagctagagcagcaatctcgggtatacca 471 |||||| |||| || |||||||| || |||||||| |||||||||||||| || ||||| Sbjct: 3017 tggggcggcattcaccgcgatgcaactacaggagcttgagcagcaatctcgtgtctacca 3076 Query: 472 gtatatggctgccccgtgtgcccgtacctacccatctcgtcttccccatctggaagagtg 531 |||||||||||||| ||||||| || ||||| |||||||||||||| || |||||||||| Sbjct: 3077 gtatatggctgccc-gtgtgcctgtgcctactcatctcgtcttcccaatatggaagagtg 3135 Query: 532 ttaccggtgcatcctctgaaggcgcccagaattaccc 568 |||| |||||||| ||||||||||||||||| ||||| Sbjct: 3136 ttactggtgcatcttctgaaggcgcccagaagtaccc 3172 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 574 tgatgggattggcaactctctgcttggactt 604 ||||||| |||||||| |||||||||||||| Sbjct: 3503 tgatggggttggcaacactctgcttggactt 3533 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 91 catggcggcggagggggaggacaagaa 117 |||||||||||||||||||| |||||| Sbjct: 1843 catggcggcggagggggaggccaagaa 1869
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 192 bits (97), Expect = 9e-46 Identities = 188/217 (86%), Gaps = 1/217 (0%) Strand = Plus / Plus Query: 352 agcaactgcagcacttcaggaagaaatgagagtgcttttggcgtctgtccctgaaggtgc 411 ||||||||||||||||||||||||||||| || ||| | | || ||||| | ||||| Sbjct: 16570314 agcaactgcagcacttcaggaagaaatgaaagcgctcgttgaatccgtcccagttggtgc 16570373 Query: 412 tggggcatcatttactgcgatgcagctgcaggagctagagcagcaatctcgggtatacca 471 |||||| |||| || |||||||| || |||||||| |||||||||||||| || ||||| Sbjct: 16570374 tggggcggcattcaccgcgatgcaactacaggagcttgagcagcaatctcgtgtctacca 16570433 Query: 472 gtatatggctgccccgtgtgcccgtacctacccatctcgtcttccccatctggaagagtg 531 |||||||||||||| ||||||| || ||||| |||||||||||||| || |||||||||| Sbjct: 16570434 gtatatggctgccc-gtgtgcctgtgcctactcatctcgtcttcccaatatggaagagtg 16570492 Query: 532 ttaccggtgcatcctctgaaggcgcccagaattaccc 568 |||| |||||||| ||||||||||||||||| ||||| Sbjct: 16570493 ttactggtgcatcttctgaaggcgcccagaagtaccc 16570529 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 574 tgatgggattggcaactctctgcttggactt 604 ||||||| |||||||| |||||||||||||| Sbjct: 16570860 tgatggggttggcaacactctgcttggactt 16570890 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 91 catggcggcggagggggaggacaagaa 117 |||||||||||||||||||| |||||| Sbjct: 16569200 catggcggcggagggggaggccaagaa 16569226 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccatggcggcggagggggagg 110 ||||||||||||||||||||| Sbjct: 1315364 ccatggcggcggagggggagg 1315384
>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0003B09 Length = 161813 Score = 192 bits (97), Expect = 9e-46 Identities = 188/217 (86%), Gaps = 1/217 (0%) Strand = Plus / Plus Query: 352 agcaactgcagcacttcaggaagaaatgagagtgcttttggcgtctgtccctgaaggtgc 411 ||||||||||||||||||||||||||||| || ||| | | || ||||| | ||||| Sbjct: 60934 agcaactgcagcacttcaggaagaaatgaaagcgctcgttgaatccgtcccagttggtgc 60993 Query: 412 tggggcatcatttactgcgatgcagctgcaggagctagagcagcaatctcgggtatacca 471 |||||| |||| || |||||||| || |||||||| |||||||||||||| || ||||| Sbjct: 60994 tggggcggcattcaccgcgatgcaactacaggagcttgagcagcaatctcgtgtctacca 61053 Query: 472 gtatatggctgccccgtgtgcccgtacctacccatctcgtcttccccatctggaagagtg 531 |||||||||||||| ||||||| || ||||| |||||||||||||| || |||||||||| Sbjct: 61054 gtatatggctgccc-gtgtgcctgtgcctactcatctcgtcttcccaatatggaagagtg 61112 Query: 532 ttaccggtgcatcctctgaaggcgcccagaattaccc 568 |||| |||||||| ||||||||||||||||| ||||| Sbjct: 61113 ttactggtgcatcttctgaaggcgcccagaagtaccc 61149 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 574 tgatgggattggcaactctctgcttggactt 604 ||||||| |||||||| |||||||||||||| Sbjct: 61480 tgatggggttggcaacactctgcttggactt 61510 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 91 catggcggcggagggggaggacaagaa 117 |||||||||||||||||||| |||||| Sbjct: 59820 catggcggcggagggggaggccaagaa 59846
>ref|NG_001600.1| Rattus norvegicus metallothionein 1, pseudogene 1 (Mt1-ps1) on chromosome 1 Length = 575 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 432 tgcagctgcaggagctagagca 453 |||||||||||||||||||||| Sbjct: 230 tgcagctgcaggagctagagca 209
>gb|M11796.1|RATMT1PA Rat metallothionein-1 pseudogene a (MT-1-pseudo-a) Length = 2314 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 432 tgcagctgcaggagctagagca 453 |||||||||||||||||||||| Sbjct: 386 tgcagctgcaggagctagagca 365
>ref|XM_476456.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1054 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ccatggcggcggagggggagg 110 ||||||||||||||||||||| Sbjct: 83 ccatggcggcggagggggagg 63
>dbj|AK075760.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700030I23 product:cellular nucleic acid binding protein, full insert sequence Length = 1673 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ggtgggcgaggcggaggagag 243 ||||||||||||||||||||| Sbjct: 1 ggtgggcgaggcggaggagag 21
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcggcggagggggaggac 112 ||||||||||||||||||||| Sbjct: 23798998 atggcggcggagggggaggac 23799018
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcggcggagggggaggac 112 ||||||||||||||||||||| Sbjct: 147074 atggcggcggagggggaggac 147094
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0556B08 Length = 136775 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcggcggagggggaggac 112 ||||||||||||||||||||| Sbjct: 38663 atggcggcggagggggaggac 38683
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccatggcggcggagggggagg 110 ||||||||||||||||||||| Sbjct: 80199 ccatggcggcggagggggagg 80219
>dbj|AK068837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159A01, full insert sequence Length = 1054 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ccatggcggcggagggggagg 110 ||||||||||||||||||||| Sbjct: 83 ccatggcggcggagggggagg 63
>dbj|AK066695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074G13, full insert sequence Length = 1556 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcggcggagggggaggac 112 ||||||||||||||||||||| Sbjct: 106 atggcggcggagggggaggac 126
>dbj|AK063158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C12, full insert sequence Length = 1695 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcggcggagggggaggac 112 ||||||||||||||||||||| Sbjct: 109 atggcggcggagggggaggac 129
>emb|AJ865375.1| Xenopus laevis mRNA for Exportin 6 (xpo6 gene) Length = 3408 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gattctgcaggcggtagggcaagaacccggtca 216 ||||||||||| ||||| ||||||||| ||||| Sbjct: 2712 gattctgcaggtggtagtgcaagaacctggtca 2744
>gb|BC084952.1| Xenopus laevis hypothetical LOC495496, mRNA (cDNA clone MGC:83326 IMAGE:6864379), complete cds Length = 4048 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gattctgcaggcggtagggcaagaacccggtca 216 ||||||||||| ||||| ||||||||| ||||| Sbjct: 2746 gattctgcaggtggtagtgcaagaacctggtca 2778
>gb|AY329623.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene, complete cds Length = 8035 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 30 gtgggcgaggcggaggagag 49
>gb|AY329622.1| Homo sapiens zinc finger protein 9 (ZNF9) gene, complete cds Length = 14461 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 97 gtgggcgaggcggaggagag 116
>gb|AY456695.1| Rattus norvegicus SA protein (Sah) gene, complete cds Length = 26997 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 cactgatgggattggcaact 590 |||||||||||||||||||| Sbjct: 14362 cactgatgggattggcaact 14381
>gb|AY455861.1| Rattus norvegicus SAH (Sah) gene, complete cds Length = 32300 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 cactgatgggattggcaact 590 |||||||||||||||||||| Sbjct: 18408 cactgatgggattggcaact 18427
>ref|XM_852656.1| PREDICTED: Canis familiaris similar to cellular nucleic acid binding protein 1, transcript variant 6 (LOC476518), mRNA Length = 1612 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 5 gtgggcgaggcggaggagag 24
>ref|XM_852611.1| PREDICTED: Canis familiaris similar to cellular nucleic acid binding protein 1, transcript variant 5 (LOC476518), mRNA Length = 1671 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 10 gtgggcgaggcggaggagag 29
>ref|XM_843913.1| PREDICTED: Canis familiaris similar to cellular nucleic acid binding protein 1, transcript variant 2 (LOC476518), mRNA Length = 1696 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 5 gtgggcgaggcggaggagag 24
>ref|XM_807593.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510535.20) partial mRNA Length = 8019 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggtgggcgaggcggaggaga 242 |||||||||||||||||||| Sbjct: 2514 ggtgggcgaggcggaggaga 2533
>ref|XM_504593.1| Yarrowia lipolytica CLIB122, YALI0E30525g predicted mRNA Length = 1449 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ggtcgaggatccagaggaag 347 |||||||||||||||||||| Sbjct: 131 ggtcgaggatccagaggaag 112
>emb|AL139113.21| Human DNA sequence from clone RP11-176F3 on chromosome 9 Contains the 3' end of the PRSS3 gene for serine protease 3 (mesotrypsin) (MTG, TRY3, TRY4, PRSS4), the 5' end of a novel gene, two novel pseudogenes, a DC2 protein pseudogene, the UBC3B gene for ubiquitin-conjugating enzyme, two novel genes, the 3' end of a novel gene (KIAA1491, FLJ22435, FLJ21704, FLJ22148, FLJ33002) and a CpG island, complete sequence Length = 193280 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 cacttcaggaagaaatgaga 382 |||||||||||||||||||| Sbjct: 50180 cacttcaggaagaaatgaga 50161
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggtgggcgaggcggaggaga 242 |||||||||||||||||||| Sbjct: 1756512 ggtgggcgaggcggaggaga 1756531 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggcggaggagagtgcagatc 251 |||||||||||||||||||| Sbjct: 1638595 ggcggaggagagtgcagatc 1638576
>gb|AC055777.12| Mus musculus chromosome 10, clone RP23-56K17, complete sequence Length = 186105 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 atctcgggtataccagtata 476 |||||||||||||||||||| Sbjct: 126046 atctcgggtataccagtata 126027
>gb|AC087457.5| Homo sapiens chromosome 15, clone RP11-814P5, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 107217 gtgggcgaggcggaggagag 107236
>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 240079 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 12380 gtgggcgaggcggaggagag 12399
>gb|AY176064.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene, complete cds Length = 12191 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 3319 gtgggcgaggcggaggagag 3338
>gb|AC153872.2| Mus musculus 6 BAC RP23-226O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203418 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 32441 gtgggcgaggcggaggagag 32422
>gb|AC087071.2|AC087071 Homo sapiens chromosome 7 clone RP11-775D22, complete sequence Length = 183353 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctggtcctggtagaggacca 321 |||||||||||||||||||| Sbjct: 154959 ctggtcctggtagaggacca 154978
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 gcggcggaggaggcgattctgcag 193 ||||| |||||||||||||||||| Sbjct: 195487 gcggcagaggaggcgattctgcag 195464
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggcggaggagagtgcagatc 251 |||||||||||||||||||| Sbjct: 3656556 ggcggaggagagtgcagatc 3656537
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggcggaggagagtgcagatc 251 |||||||||||||||||||| Sbjct: 65036 ggcggaggagagtgcagatc 65017
>gb|AC135587.3| Homo sapiens 3 BAC RP11-309B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 71577 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gtgggcgaggcggaggagag 243 |||||||||||||||||||| Sbjct: 9824 gtgggcgaggcggaggagag 9805
>gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, complete sequence Length = 168405 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctggtcctggtagaggacca 321 |||||||||||||||||||| Sbjct: 4665 ctggtcctggtagaggacca 4684
>dbj|AP006058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16 Length = 190143 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 gcggcggaggaggcgattctgcag 193 ||||| |||||||||||||||||| Sbjct: 90985 gcggcagaggaggcgattctgcag 90962
>dbj|AK120565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133J10, full insert sequence Length = 3753 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 gcggcggaggaggcgattctgcag 193 ||||| |||||||||||||||||| Sbjct: 31 gcggcagaggaggcgattctgcag 54
>emb|BX897731.7| Zebrafish DNA sequence from clone DKEY-146J3 in linkage group 4, complete sequence Length = 99029 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 gatgcagctgcaggagctagagca 453 ||||| |||||||||||||||||| Sbjct: 13969 gatgctgctgcaggagctagagca 13946
>gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 230270 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 atctcgggtataccagtata 476 |||||||||||||||||||| Sbjct: 183205 atctcgggtataccagtata 183224
>gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, complete sequence Length = 183137 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 agcaactgcagcacttcagg 371 |||||||||||||||||||| Sbjct: 134873 agcaactgcagcacttcagg 134854
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ggtcgaggatccagaggaag 347 |||||||||||||||||||| Sbjct: 3590838 ggtcgaggatccagaggaag 3590819 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,717,239 Number of Sequences: 3902068 Number of extensions: 4717239 Number of successful extensions: 99482 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99040 Number of HSP's gapped (non-prelim): 437 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)