ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3l24 |
|---|---|
| Clone Library Name | barley_pub |
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 32.7 bits (73), Expect = 0.86 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +1 Query: 202 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDVKPEPALPFNPLAA 381 RGG GP+ G G G G LSG ++G++ D P PA P P+ Sbjct: 75 RGGIGPMGPRGAGGMPGMPGPKGHRGFRGLSGSKGEQGKSGNQGPDGGPGPAGPSGPIGP 134 Query: 382 RAAT 393 R T Sbjct: 135 RGQT 138
>PPK_RHOBA (Q7ULJ4) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid| kinase) (ATP-polyphosphate phosphotransferase) Length = 852 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 296 PERGTIPSCPWKSLNADSKPGPSSKIGPLPPRAATRQSRRK 174 P R +I P+ SL P PS +G P ++ SRRK Sbjct: 42 PHRHSISFSPFASLTLSHDPAPSQSVGKRPQKSTKTASRRK 82
>RPOB_UREPA (Q9PQV6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1434 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +1 Query: 244 ESAFKLFHGQDGIVPLSGRSYVPDENGSESTD 339 +S+ K+ HGQ+GIV R DENGSE D Sbjct: 1030 DSSLKVKHGQEGIVAAVKRIKSSDENGSELPD 1061
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/58 (34%), Positives = 22/58 (37%) Frame = +1 Query: 190 LVAARGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDVKPEPALP 363 L RG GP E GPG G G L+G+ VP E G P P P Sbjct: 368 LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGP 425
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 30.8 bits (68), Expect = 3.3 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 417 IWVQLL*WQGQKAEQEAQQSRPVTQEAQQAKSEFHETKRRQPTVPR 554 +W+Q KAEQ+ QQ + Q+ QQ + H +++Q PR Sbjct: 659 LWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHHHHLQQQQAEAPR 704
>PARA_TRYBB (P18764) Procyclic form-specific polypeptide A-alpha precursor| (Procyclin A-alpha) (PARP A-alpha) Length = 114 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 14/77 (18%) Frame = +1 Query: 193 VAARGGKGPIFEDGP------GFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDVKPEP 354 V +GGKG EDGP G E G + P P+E G E T+ +PEP Sbjct: 35 VIVKGGKGKEREDGPEEPEETGPEETGPEETGPEETGP---EETGPEETGPEETEPEPEP 91 Query: 355 --------ALPFNPLAA 381 ALPF AA Sbjct: 92 GAATLKSVALPFAVAAA 108
>NCAP_CVMS (P18448) Nucleocapsid protein (N structural protein) (NC)| Length = 454 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -3 Query: 299 LPERGTIPSCPWKSLNADSKPGPSSKIGPLPPRAATRQSRRK*KGCGSIDVPQEWASLNT 120 LP TI ++LNA K G + + P P R RQ++ K ++ V + +S+ Sbjct: 362 LPGFETIMKVLNENLNAYQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQR 421 Query: 119 GMARKV 102 ++R++ Sbjct: 422 NVSREL 427
>NCAP_CVMA5 (P03416) Nucleocapsid protein (N structural protein) (NC)| Length = 454 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -3 Query: 299 LPERGTIPSCPWKSLNADSKPGPSSKIGPLPPRAATRQSRRK*KGCGSIDVPQEWASLNT 120 LP TI ++LNA K G + + P P R RQ++ K ++ V + +S+ Sbjct: 362 LPGFETIMKVLNENLNAYQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQR 421 Query: 119 GMARKV 102 ++R++ Sbjct: 422 NVSREL 427
>NCAP_CVM3 (P18447) Nucleocapsid protein (N structural protein) (NC)| Length = 454 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -3 Query: 299 LPERGTIPSCPWKSLNADSKPGPSSKIGPLPPRAATRQSRRK*KGCGSIDVPQEWASLNT 120 LP TI ++LNA K G + + P P R RQ++ K ++ V + +S+ Sbjct: 362 LPGFETIMKVLNENLNAYQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQR 421 Query: 119 GMARKV 102 ++R++ Sbjct: 422 NVSREL 427
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +1 Query: 202 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSES----TDVKPEPALPFN 369 +G +GP+ E+GP E + G +G+ G S +P +G E K EP P Sbjct: 502 QGQRGPVGEEGPKGERGPQGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGT 561 Query: 370 P 372 P Sbjct: 562 P 562
>PDP2_HUMAN (Q9P2J9) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 2,| mitochondrial precursor (EC 3.1.3.43) (PDP 2) (Pyruvate dehydrogenase phosphatase, catalytic subunit 2) (PDPC 2) Length = 529 Score = 29.3 bits (64), Expect = 9.5 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Frame = +2 Query: 338 MSSLNLLCPLIHWLLEPLP*VYH-----HLDHL 421 M S+ L P++HWL P +Y HLDHL Sbjct: 177 MESMKPLLPILHWLKHPGDSIYKDVTSVHLDHL 209
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -3 Query: 290 RGTIPSCPWKSLNADSKPGPSSKIGPLPPRAATRQSRR 177 +GTIP PW S S + + GP P AAT S++ Sbjct: 591 KGTIPKRPWLSATPSSGASAARQAGP-APAAATAASKK 627 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,460,432 Number of Sequences: 219361 Number of extensions: 1941006 Number of successful extensions: 6438 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5962 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6432 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
