ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3l23 |
|---|---|
| Clone Library Name | barley_pub |
>BCK2_YEAST (P33306) Protein BCK2 (Bypass of kinase C protein)| Length = 851 Score = 33.9 bits (76), Expect = 0.22 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Frame = -3 Query: 435 PKGTTGTRTRNKHQNSSKRRSGAQPAFHTTARIQFRLSPSCILTRKPCTTLGYTLQSKIS 256 P+ +G+ + H+ + S AQ H+ + I +PS L P GYTL S S Sbjct: 471 PQHKSGS-VKGGHRKKQESISDAQRIQHSNSYIT---TPSSSLVTPPYYMTGYTLPSSAS 526 Query: 255 ESSLPS-FAFHGLQLIHAYIGSGETGSTLRPFPCFSSATK-FAASREPSG 112 SS P+ H + ++ S T ++ RP FSS K ++ + SG Sbjct: 527 ASSTPNVLETHNMN----FVPSTSTVTSYRPSSNFSSFDKEYSNENDASG 572
>SPB4_ASPOR (Q2UBZ5) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 638 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 366 QPAFHTTARIQFRLSPSCI-LTRKPCTTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSG 190 +P T++R +SPS + +++G+T + + S++P F H ++ A GSG Sbjct: 4 KPPAGTSSRAWDGVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSG 63 Query: 189 ETGSTLRP 166 +T S L P Sbjct: 64 KTLSFLIP 71
>SPB4_ASPFU (Q4WYJ7) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 640 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -3 Query: 291 TTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSGETGSTLRP 166 +++G+T + + S++P F H ++ A GSG+T S L P Sbjct: 30 SSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIP 71
>SPB4_EMENI (Q5B8F4) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 638 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -3 Query: 291 TTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSGETGSTLRP 166 +++G+T + + S++P F H ++ A GSG+T S L P Sbjct: 30 SSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIP 71
>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Frame = -2 Query: 277 HLTVQNLRELPTEFCLPRPSVNTRIYRLRRNWE-------HPPSVPLLLLSDKICSL*GA 119 H + NL + +CLP P ++R+ ++W PS+PLL L D + S+ G Sbjct: 854 HYVLDNLVNVMNGYCLPDPFFSSRV----KDWVEGLMKTLRDPSLPLLELQDIMTSVSGR 909 Query: 118 L 116 + Sbjct: 910 I 910
>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = -2 Query: 277 HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*GAL 116 H + NL + +CLP P ++R + RL + PS+PLL L D + S+ G + Sbjct: 854 HYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTL-RDPSLPLLELQDIMTSVSGRI 910
>IPPK_DROME (Q9W2Q7) Inositol-pentakisphosphate 2-kinase (EC 2.7.1.-)| (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase) (DmIpk1) Length = 621 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -3 Query: 435 PKGTTGTRTRNKHQNSSKRRSGAQPAFHTTARIQ----FRLSPSCILTR 301 P T +RN +QN S++ + +PA T A+ FRL +C+L + Sbjct: 531 PAEAASTTSRNVNQNESQKLNRNEPANQTQAQNNKTEIFRLPKNCVLQK 579
>COAC_CHICK (P11029) Acetyl-CoA carboxylase (EC 6.4.1.2) (ACC) [Includes: Biotin| carboxylase (EC 6.3.4.14)] Length = 2324 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = -2 Query: 277 HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*GAL 116 H + NL + +CLP P +++ + RL + PS+PLL L D + S+ G + Sbjct: 854 HYVLDNLVNVMNGYCLPEPYFSSKVKGWVERLMKTL-RDPSLPLLELQDIMTSVSGRI 910
>PERL_BOVIN (P80025) Lactoperoxidase precursor (EC 1.11.1.7) (LPO)| Length = 712 Score = 28.9 bits (63), Expect = 7.1 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Frame = -1 Query: 308 LLGNPVQRWVTPYSPKSQRAPYRVLPSTAFS*YTHI*AQEKLGAPSVRSLASPQRQNLQP 129 +LG+ +Q+W+ PY + R+ F+ + G V S S +N QP Sbjct: 433 VLGSEMQKWIPPYQGYNNSVDPRISNVFTFA--------FRFGHMEVPSTVSRLDENYQP 484 Query: 128 LG--SPLVAHDI*VNSYRLWK 72 G + L H + N++R+ K Sbjct: 485 WGPEAELPLHTLFFNTWRIIK 505
>GIDA_AZOSE (Q5P4J6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 652 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Frame = -2 Query: 289 NAGLHLTVQNLRELP-------TEFCLPRPSVNTRIYRLRRNWEHPPSVP 161 NA L LT + REL FC R ++ RLR W HP VP Sbjct: 443 NADLRLTEKG-RELGLVDDVRWAAFCEKRDAIERETARLRAAWAHPARVP 491
>Y301_METJA (Q57749) Hypothetical protein MJ0301| Length = 294 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 404 INIKTVPKDAAGHNLPFIQQHEYSF 330 I I T+ +D AG+N PF QH SF Sbjct: 11 IKIYTLAEDYAGYNSPFWSQHGLSF 35 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,790,748 Number of Sequences: 219361 Number of extensions: 1673662 Number of successful extensions: 4424 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4306 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4424 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
