Clone Name
basd3l23
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
900
0.0
2 emb|BX682545.5| Mouse DNA sequence from clone RP23-311B24 on chr...
44
0.41
3 gb|AC166159.2| Mus musculus BAC clone RP24-129B16 from chromosom...
40
6.4
4 gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome...
40
6.4
5 gb|AY774547.1| Synthetic construct Francisella tularensis clone ...
40
6.4
6 gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, com...
40
6.4
7 gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, comp...
40
6.4
8 gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, comp...
40
6.4
9 emb|BX957322.7| Zebrafish DNA sequence from clone CH211-179J10 i...
40
6.4
10 ref|XM_660717.1| Cryptosporidium hominis TU502 hypothetical prot...
40
6.4
11 gb|AC144823.2| Danio rerio clone CH211-150P19, complete sequence
40
6.4
12 emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on...
40
6.4
13 emb|AL591500.6| Human DNA sequence from clone RP11-460O11 on chr...
40
6.4
14 ref|XM_792835.1| PREDICTED: Strongylocentrotus purpuratus simila...
40
6.4
15 gb|AC138593.14| Mus musculus chromosome 8, clone RP24-280K15, co...
40
6.4
16 gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
40
6.4
17 gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can...
40
6.4
18 emb|BX572641.10| Zebrafish DNA sequence from clone CH211-213N22 ...
40
6.4
19 gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, co...
40
6.4
20 gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31,...
40
6.4
21 gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, ...
40
6.4
22 gb|AF222021.1|AF222021 Secale cereale E3900 repeat region and ga...
40
6.4
23 gb|AC007052.4|AC007052 Homo sapiens chromosome 18, clone hRPK.41...
40
6.4
24 gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, com...
40
6.4
25 emb|AM233362.1| Francisella tularensis subsp. holarctica strain ...
40
6.4
26 emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4...
40
6.4
27 gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
40
6.4
28 gb|AY871967.1| Synthetic construct hypothetical protein (FTT0077...
40
6.4
29 gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome...
40
6.4
>gb| AF474982.1 | Hordeum vulgare clone BAC 011009, complete sequence
Length = 77136
Score = 900 bits (454), Expect = 0.0
Identities = 461/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 2 ccgaccttttgacagttgcaatcccagttttcacattaccatcctttcccacctcttttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58375 ccgaccttttgacagttgcaatcccagttttcacattaccatcctttcccacctcttttt 58434
Query: 62 gcttgtggtatttccagagtctgtagctatttacttatatgtcgtgggctaccagagggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58435 gcttgtggtatttccagagtctgtagctatttacttatatgtcgtgggctaccagagggc 58494
Query: 122 tccctagaggctgcaaattttgtcgctgaggagaagcaagggaacggacggagggtgctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58495 tccctagaggctgcaaattttgtcgctgaggagaagcaagggaacggacggagggtgctc 58554
Query: 182 ccagtttctcctgagcctatatatgcgtgtattaactgaaggccgtggaaggcaaaactc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58555 ccagtttctcctgagcctatatatgcgtgtattaactgaaggccgtggaaggcaaaactc 58614
Query: 242 ggtagggagctctctgagattttggactgtaaggtgtaacccagcgttgtacagggtttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58615 ggtagggagctctctgagattttggactgtaaggtgtaacccagcgttgtacagggtttc 58674
Query: 302 ctagtaagaatgcatgacggggacagccgaaactgtattcgtgctgttgtatgaaaggca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58675 ctagtaagaatgcatgacggggacagccgaaactgtattcgtgctgttgtatgaaaggca 58734
Query: 362 ggttgtgccccgctgcgtcttttggaactgttttgatgtttatttctggtgcgtgtgccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 58735 ggttgtgccccgctgcgtcttttggaactgttttgatgtttatttctggtgcgtgtg-cc 58793
Query: 422 gtggtgccttttgggtgtcggaatgaagccctgtgcgttgcc 463
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58794 gtggtgccttttgggtgtcggaatgaagccctgtgcgttgcc 58835
>emb| BX682545.5 | Mouse DNA sequence from clone RP23-311B24 on chromosome 4, complete
sequence
Length = 217751
Score = 44.1 bits (22), Expect = 0.41
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 ctatttacttatatgtcgtggg 109
||||||||||||||||||||||
Sbjct: 172752 ctatttacttatatgtcgtggg 172773
>gb| AC166159.2 | Mus musculus BAC clone RP24-129B16 from chromosome 15, complete sequence
Length = 216481
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 381 ttttggaactgttttgatgtttat 404
||||||| ||||||||||||||||
Sbjct: 155286 ttttggagctgttttgatgtttat 155263
>gb| AC167973.4 | Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence
Length = 182190
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 taccagagggctccctagag 130
||||||||||||||||||||
Sbjct: 58778 taccagagggctccctagag 58759
>gb| AY774547.1 | Synthetic construct Francisella tularensis clone FLH152910.01X
NT02FT1785 gene, complete cds
Length = 1470
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69 gtatttccagagtctgtagc 88
||||||||||||||||||||
Sbjct: 328 gtatttccagagtctgtagc 347
>gb| AC131106.4 | Mus musculus chromosome 15 clone RP23-301M20, complete sequence
Length = 218875
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 381 ttttggaactgttttgatgtttat 404
||||||| ||||||||||||||||
Sbjct: 1462 ttttggagctgttttgatgtttat 1439
>gb| AC146108.3 | Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence
Length = 230349
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 ctttcccacctctttttgct 64
||||||||||||||||||||
Sbjct: 93238 ctttcccacctctttttgct 93257
>gb| AC146056.2 | Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence
Length = 154447
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 ctttcccacctctttttgct 64
||||||||||||||||||||
Sbjct: 136516 ctttcccacctctttttgct 136535
>emb| BX957322.7 | Zebrafish DNA sequence from clone CH211-179J10 in linkage group 10,
complete sequence
Length = 138899
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 ttttgacagttgcaatcccagttt 31
|||||||| |||||||||||||||
Sbjct: 38723 ttttgacatttgcaatcccagttt 38700
>ref| XM_660717.1 | Cryptosporidium hominis TU502 hypothetical protein (Chro.50327)
partial mRNA
Length = 303
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 379 tcttttggaactgttttgat 398
||||||||||||||||||||
Sbjct: 221 tcttttggaactgttttgat 202
>gb| AC144823.2 | Danio rerio clone CH211-150P19, complete sequence
Length = 159419
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 ttttgacagttgcaatcccagttt 31
|||||||| |||||||||||||||
Sbjct: 20407 ttttgacatttgcaatcccagttt 20384
>emb| Z95114.19 |HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12,
complete sequence
Length = 212753
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgcttgtggtatttccag 78
||||||||||||||||||||
Sbjct: 934 tttgcttgtggtatttccag 953
>emb| AL591500.6 | Human DNA sequence from clone RP11-460O11 on chromosome 6, complete
sequence
Length = 60463
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 cttttgacagttgcaatcccagttttca 34
||||||||||||| ||| ||||||||||
Sbjct: 8295 cttttgacagttgaaatgccagttttca 8322
>ref| XM_792835.1 | PREDICTED: Strongylocentrotus purpuratus similar to coagulation
factor V precursor (LOC593356), mRNA
Length = 930
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 266 gactgtaaggtgtaacccagcgtt 289
||||||||| ||||||||||||||
Sbjct: 742 gactgtaagctgtaacccagcgtt 719
>gb| AC138593.14 | Mus musculus chromosome 8, clone RP24-280K15, complete sequence
Length = 169176
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 290 gtacagggtttcctagtaag 309
||||||||||||||||||||
Sbjct: 159633 gtacagggtttcctagtaag 159652
>gb| AC146469.23 | Pan troglodytes clone rp43-45g24, complete sequence
Length = 191684
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 tttgcttgtggtatttccag 78
||||||||||||||||||||
Sbjct: 166794 tttgcttgtggtatttccag 166775
>gb| AC153549.5 | Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute
(C57BL/6J Female) Mouse BAC Library) complete sequence
Length = 217249
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 298 tttcctagtaagaatgcatg 317
||||||||||||||||||||
Sbjct: 88024 tttcctagtaagaatgcatg 88005
>emb| BX572641.10 | Zebrafish DNA sequence from clone CH211-213N22 in linkage group 12,
complete sequence
Length = 183309
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 388 actgttttgatgtttatttc 407
||||||||||||||||||||
Sbjct: 166618 actgttttgatgtttatttc 166637
>gb| AC154881.6 | Mus musculus chromosome 15, clone RP24-259H19, complete sequence
Length = 180231
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 378 gtcttttggaactgttttga 397
||||||||||||||||||||
Sbjct: 103629 gtcttttggaactgttttga 103648
>gb| AC009542.2 |AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence
Length = 160367
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 ctttcccacctctttttgct 64
||||||||||||||||||||
Sbjct: 68816 ctttcccacctctttttgct 68797
>gb| AC009330.5 |AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence
Length = 174768
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 ctttcccacctctttttgct 64
||||||||||||||||||||
Sbjct: 65989 ctttcccacctctttttgct 65970
>gb| AF222021.1 |AF222021 Secale cereale E3900 repeat region and gag pseudogene, complete
sequence
Length = 3984
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 48 tcccacctctttttgcttgt 67
||||||||||||||||||||
Sbjct: 1502 tcccacctctttttgcttgt 1483
>gb| AC007052.4 |AC007052 Homo sapiens chromosome 18, clone hRPK.411_H_24, complete sequence
Length = 179726
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ctctttttgcttgtggtatt 73
||||||||||||||||||||
Sbjct: 126666 ctctttttgcttgtggtatt 126685
>gb| AC099713.5 | Mus musculus chromosome 15, clone RP23-447B6, complete sequence
Length = 199130
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 245 agggagctctctgagatttt 264
||||||||||||||||||||
Sbjct: 165331 agggagctctctgagatttt 165350
>emb| AM233362.1 | Francisella tularensis subsp. holarctica strain LVS complete genome
Length = 1895994
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 69 gtatttccagagtctgtagc 88
||||||||||||||||||||
Sbjct: 1714478 gtatttccagagtctgtagc 1714459
>emb| AJ749949.1 | Francisella tularensis subsp. tularensis SCHU S4 complete genome
Length = 1892819
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69 gtatttccagagtctgtagc 88
||||||||||||||||||||
Sbjct: 80353 gtatttccagagtctgtagc 80372
>gb| AE014295.3 | Bifidobacterium longum NCC2705, complete genome
Length = 2256640
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 aaggccgtggaaggcaaaac 239
||||||||||||||||||||
Sbjct: 379176 aaggccgtggaaggcaaaac 379195
>gb| AY871967.1 | Synthetic construct hypothetical protein (FTT0077) gene, complete
cds
Length = 1575
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69 gtatttccagagtctgtagc 88
||||||||||||||||||||
Sbjct: 406 gtatttccagagtctgtagc 425
>gb| AC168051.3 | Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence
Length = 222981
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 290 gtacagggtttcctagtaag 309
||||||||||||||||||||
Sbjct: 157390 gtacagggtttcctagtaag 157371
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,912,340
Number of Sequences: 3902068
Number of extensions: 3912340
Number of successful extensions: 70847
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70765
Number of HSP's gapped (non-prelim): 81
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)