>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor|
            protein 550) (AKAP 550) (dAKAP550)
          Length = 3584

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 186  LAQGHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQ-PGVXGRVGAVDG 362
            ++  H   HH Q ++  AG+  +QQ H     +     P  E   V+ P   G  G+  G
Sbjct: 2405 ISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGG 2464

Query: 363  -EXGRGQGLP 389
               G+GQG+P
Sbjct: 2465 VNSGQGQGVP 2474

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 16/66 (24%)
 Frame = +3

Query: 192 QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 323
           +GHA +H         HR G       RGH     RQQGH P      HR     E G  
Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649

Query: 324 QPGVXG 341
            PG  G
Sbjct: 650 SPGPAG 655

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 210 HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVXGRVGAVDG 362
           H R+G  GH      ++ H  RR+A HR +       + P +   +GAV G
Sbjct: 18  HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68

>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 CLAVRDGEVVLAPVNPKDETQHWL 192
           CL  +D + V+A  NP D  QHWL
Sbjct: 597 CLTSKDKKPVMATCNPSDPHQHWL 620

>FANK1_MOUSE (Q9DAM9) Fibronectin type 3 and ankyrin repeat domains 1 protein|
           (Germ cell-specific gene 1 protein) (GSG1)
          Length = 344

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 28  SGSGTTTRXQAPAASGPNQIFKIYCRASEDYCLAVRDGE--VVLAPVNPKDETQHWLKDM 201
           +GSG T   +  A +G  ++  +   A  D  +  +DG+  +++A +N  ++    L D 
Sbjct: 241 TGSGWTPLMRVSAVTGSQKVASLLIEAGADVNIKDKDGKTPLMVAVLNNHEQLVQLLLDK 300

Query: 202 RFSTTVKDEEG 234
               TVK+E G
Sbjct: 301 GADATVKNEFG 311

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 291 RPVPPREAGAVQPGVXGRVGAVDGEXGRGQG 383
           RP   +  G  +PG  G VGA  G  GRG G
Sbjct: 414 RPYAKKGPGGARPGTGGPVGARSGGPGRGAG 444

>FANK1_RAT (Q66H07) Fibronectin type 3 and ankyrin repeat domains 1 protein|
          Length = 344

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 28  SGSGTTTRXQAPAASGPNQIFKIYCRASEDYCLAVRDGE--VVLAPVNPKDETQHWLKDM 201
           +GSG T   +  A +G  ++  +   A  D  +  +DG+  +++A +N  ++    L D 
Sbjct: 241 TGSGWTPLMRVSAVTGSQKVASLLIEAGADVNVRDKDGKTPLMVAVLNNHEQLVQLLLDK 300

Query: 202 RFSTTVKDEEG 234
               TVK+E G
Sbjct: 301 GADATVKNEFG 311

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 279  QALHRPVPPREAGAVQPGVXGRVGAVDGEXGR 374
            QA  RPVPPRE G++      RVG   G  GR
Sbjct: 1429 QASARPVPPRERGSLPVIEGTRVGQEPGGRGR 1460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,908,228
Number of Sequences: 219361
Number of extensions: 1220157
Number of successful extensions: 4565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4562
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)