ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOAA_CORGL (Q8NR60) Molybdenum cofactor biosynthesis protein A 33 0.33
2CO3_HUMAN (P01024) Complement C3 precursor [Contains: Complement... 30 3.6
3COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment) 29 6.2
4CO3_ONCMY (P98093) Complement C3-1 [Contains: Complement C3 beta... 29 8.1

>MOAA_CORGL (Q8NR60) Molybdenum cofactor biosynthesis protein A|
          Length = 377

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +2

Query: 323 LPTEDLDALVSVTTNDDLGHLLEEYDAASRDRLQPLKIRGVPVPKGQNAADL 478
           L T D +  VS+T  D L  +L   DAA    L P+KI  V +P G N  D+
Sbjct: 165 LDTIDAERYVSLTRRDRLSGVLASIDAAVAAGLHPVKINAVVMP-GVNEVDI 215



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>CO3_HUMAN (P01024) Complement C3 precursor [Contains: Complement C3 beta chain;|
            Complement C3 alpha chain; C3a anaphylatoxin; Complement
            C3b alpha' chain; Complement C3c fragment; Complement
            C3dg fragment; Complement C3g fragment; Complement C3d
            fragment
          Length = 1663

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = +2

Query: 221  NNRVLSVDRSLQFHELQRKLTDMCGWEAMSLRCQLPTEDLDALVSVTTNDDLGHL--LEE 394
            +++ L++D SLQ      K+T    WE+ SL     T++ +           G L  +  
Sbjct: 1288 DHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTM 1347

Query: 395  YDAASRDRLQ----PLKIRGVPVPKGQNAADLAAHPVVLQ 502
            Y A ++D+L      LK+   P P+ +     A + ++L+
Sbjct: 1348 YHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILE 1387



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>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 482

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +2

Query: 194 DGALRYVGGNNRVLSVDRSLQFHELQRKLTDMCGWEAMSLRCQLPTEDLDALVSVTTND 370
           D ALR++G N+  +S D +     L        G+E   +    P  D   ++ V  ND
Sbjct: 405 DKALRFLGSNDEEMSYDNNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMIND 463



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>CO3_ONCMY (P98093) Complement C3-1 [Contains: Complement C3 beta chain;|
            Complement C3 alpha chain; C3a anaphylatoxin; Complement
            C3b alpha' chain; Complement C3c fragment; Complement
            C3dg fragment; Complement C3g fragment; Complement C3d
            fragment; Comple
          Length = 1640

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 314  RCQLPTEDLDALVSVTTNDDLGHLLEEYDAASRDRLQPLKIRGVPVPKGQNAADLAAHPV 493
            R Q+P  D D L+SVT  +    L+E+  A S D L  L ++  PV  G+        PV
Sbjct: 945  RNQVPNSDADTLISVTAGEQTSVLVEQ--AISGDSLGSLIVQ--PVGCGEQNMIYMTLPV 1000

Query: 494  V 496
            +
Sbjct: 1001 I 1001


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,760,680
Number of Sequences: 219361
Number of extensions: 729855
Number of successful extensions: 2025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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