ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd3l05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H08, full insert sequence Length = 955 Score = 323 bits (163), Expect = 3e-85 Identities = 278/315 (88%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 144 gcgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccc 203 |||||||||| | ||||||||||| || | |||||| ||||||||| |||||||||| | Sbjct: 237 gcgtcaagttcctctgcagctacggcgggaggatcctaccacgccacgccgacggcgcgc 296 Query: 204 tccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctccaatttcacg 263 | ||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||| Sbjct: 297 tgcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctccctttccacg 356 Query: 264 agctgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagc 323 || ||||||||||||||| ||| |||||||| ||||||||| || ||||||||||||||| Sbjct: 357 agttgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagc 416 Query: 324 tgccgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacc 383 | |||||||||||||| ||||||||||||||||||| | |||||||||||| | ||| Sbjct: 417 tcccgacggaggacctggacgcgctcgtctccgtcaacggcgacgacgacctcgccaacc 476 Query: 384 tgctcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcg 443 |||| |||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| Sbjct: 477 tgctggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcg 535 Query: 444 ttcctgttcccaagg 458 ||||||||||||||| Sbjct: 536 ttcctgttcccaagg 550
>dbj|AK066452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061N18, full insert sequence Length = 968 Score = 323 bits (163), Expect = 3e-85 Identities = 278/315 (88%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 144 gcgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccc 203 |||||||||| | ||||||||||| || | |||||| ||||||||| |||||||||| | Sbjct: 246 gcgtcaagttcctctgcagctacggcgggaggatcctaccacgccacgccgacggcgcgc 305 Query: 204 tccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctccaatttcacg 263 | ||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||| Sbjct: 306 tgcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctccctttccacg 365 Query: 264 agctgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagc 323 || ||||||||||||||| ||| |||||||| ||||||||| || ||||||||||||||| Sbjct: 366 agttgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagc 425 Query: 324 tgccgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacc 383 | |||||||||||||| ||||||||||||||||||| | |||||||||||| | ||| Sbjct: 426 tcccgacggaggacctggacgcgctcgtctccgtcaacggcgacgacgacctcgccaacc 485 Query: 384 tgctcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcg 443 |||| |||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| Sbjct: 486 tgctggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcg 544 Query: 444 ttcctgttcccaagg 458 ||||||||||||||| Sbjct: 545 ttcctgttcccaagg 559
>gb|AF493074.1| Oryza sativa susceptibility antioxidant protein (RREO) mRNA, partial cds Length = 326 Score = 260 bits (131), Expect = 4e-66 Identities = 230/263 (87%) Strand = Plus / Plus Query: 145 cgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccct 204 ||||||||| | ||||||||||| || | |||||| || |||||| |||||||||| | Sbjct: 64 cgtcaagttcctctgcagctacggcgggaggatcctccctcgccacgccgacggcgcgtt 123 Query: 205 ccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctccaatttcacga 264 ||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| Sbjct: 124 gcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctccctttccacga 183 Query: 265 gctgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagct 324 | ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| Sbjct: 184 gttgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagct 243 Query: 325 gccgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacct 384 |||||||||||||| |||||||||||||||||||| | |||||||||||| | |||| Sbjct: 244 cccgacggaggacctggacgcgctcgtctccgtcaccggcgacgacgacctcgccaacct 303 Query: 385 gctcgaggagtacgacgccgcca 407 ||| |||||||||||||| |||| Sbjct: 304 gctggaggagtacgacgcggcca 326
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 214 bits (108), Expect = 2e-52 Identities = 172/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Minus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 110568 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 110509 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 110508 cgacggaggacctggacgcgctcgtctccgtcaccggcgacgacgacctcgccaacctgc 110449 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 110448 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 110390 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 110389 ctgttcccaagg 110378 Score = 206 bits (104), Expect = 5e-50 Identities = 171/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Minus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 118586 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 118527 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| ||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 118526 cgacggaggacctggacgcgctcgtctccgtcaacggcgacgacgacctcgccaacctgc 118467 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 118466 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 118408 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 118407 ctgttcccaagg 118396 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 144 gcgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccc 203 |||||||||| | ||||||||||| || | |||||| ||||||||| |||||||||| | Sbjct: 118801 gcgtcaagttcctctgcagctacggcgggaggatcctaccacgccacgccgacggcgcgc 118742 Query: 204 tccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 | ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 118741 tgcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 118691 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 145 cgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccct 204 ||||||||| | ||||||||||| || | |||||| || |||||| |||||||||| | Sbjct: 110782 cgtcaagttcctctgcagctacggcgggaggatcctccctcgccacgccgacggcgcgtt 110723 Query: 205 ccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 110722 gcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 110673 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctc 75 ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct: 110892 tcctcctggtcatcgtcctcgacgtgcacgtcgtcgctcggctc 110849
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 214 bits (108), Expect = 2e-52 Identities = 172/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Plus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 14135726 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 14135785 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 14135786 cgacggaggacctggacgcgctcgtctccgtcaccggcgacgacgacctcgccaacctgc 14135845 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 14135846 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 14135904 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 14135905 ctgttcccaagg 14135916 Score = 206 bits (104), Expect = 5e-50 Identities = 171/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Plus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 14127708 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 14127767 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| ||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 14127768 cgacggaggacctggacgcgctcgtctccgtcaacggcgacgacgacctcgccaacctgc 14127827 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 14127828 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 14127886 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 14127887 ctgttcccaagg 14127898 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 144 gcgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccc 203 |||||||||| | ||||||||||| || | |||||| ||||||||| |||||||||| | Sbjct: 14127493 gcgtcaagttcctctgcagctacggcgggaggatcctaccacgccacgccgacggcgcgc 14127552 Query: 204 tccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 | ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 14127553 tgcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 14127603 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 145 cgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccct 204 ||||||||| | ||||||||||| || | |||||| || |||||| |||||||||| | Sbjct: 14135512 cgtcaagttcctctgcagctacggcgggaggatcctccctcgccacgccgacggcgcgtt 14135571 Query: 205 ccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 14135572 gcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 14135621 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctc 75 ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct: 14135402 tcctcctggtcatcgtcctcgacgtgcacgtcgtcgctcggctc 14135445
>dbj|AK061328.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A02, full insert sequence Length = 1075 Score = 214 bits (108), Expect = 2e-52 Identities = 172/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Minus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 497 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 438 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 437 cgacggaggacctggacgcgctcgtctccgtcaccggcgacgacgacctcgccaacctgc 378 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 377 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 319 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 318 ctgttcccaagg 307 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 145 cgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccct 204 ||||||||| | ||||||||||| || | |||||| || |||||| |||||||||| | Sbjct: 711 cgtcaagttcctctgcagctacggcgggaggatcctccctcgccacgccgacggcgcgtt 652 Query: 205 ccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 651 gcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 602 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctc 75 ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct: 821 tcctcctggtcatcgtcctcgacgtgcacgtcgtcgctcggctc 778
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 214 bits (108), Expect = 2e-52 Identities = 172/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Plus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 14217728 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 14217787 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 14217788 cgacggaggacctggacgcgctcgtctccgtcaccggcgacgacgacctcgccaacctgc 14217847 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 14217848 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 14217906 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 14217907 ctgttcccaagg 14217918 Score = 206 bits (104), Expect = 5e-50 Identities = 171/192 (89%), Gaps = 1/192 (0%) Strand = Plus / Plus Query: 267 tgcaacggaagctgacggacatgtgcggatgggaggcgatgagcctgcggtgccagctgc 326 ||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||| | Sbjct: 14209710 tgcaacggaagctgagggagatgtgcgggtgggaggcggtgtgcctgcggtgccagctcc 14209769 Query: 327 cgacggaggacctagacgcgctcgtctccgtcacgaccaacgacgacctcggccacctgc 386 ||||||||||||| ||||||||||||||||||| | |||||||||||| | |||||| Sbjct: 14209770 cgacggaggacctggacgcgctcgtctccgtcaacggcgacgacgacctcgccaacctgc 14209829 Query: 387 tcgaggagtacgacgccgccagcagggaccggctccagccgctcaagataaggggcgttc 446 | |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| Sbjct: 14209830 tggaggagtacgacgcggccagccgggaccgcctccagccgctcaagat-ccgggcgttc 14209888 Query: 447 ctgttcccaagg 458 |||||||||||| Sbjct: 14209889 ctgttcccaagg 14209900 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 144 gcgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccc 203 |||||||||| | ||||||||||| || | |||||| ||||||||| |||||||||| | Sbjct: 14209495 gcgtcaagttcctctgcagctacggcgggaggatcctaccacgccacgccgacggcgcgc 14209554 Query: 204 tccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 | ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 14209555 tgcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 14209605 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 145 cgtcaagtttttgtgcagctacgggggtatgatccttccacgccaccccgacggcgccct 204 ||||||||| | ||||||||||| || | |||||| || |||||| |||||||||| | Sbjct: 14217514 cgtcaagttcctctgcagctacggcgggaggatcctccctcgccacgccgacggcgcgtt 14217573 Query: 205 ccgctacgtcggcggcaacaaccgcgtcctctccgtcgaccgctccctcc 254 ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 14217574 gcgctacgtcggcggcgacaaccgcgtcgtctccgtcgaccgctccctcc 14217623 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctc 75 ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct: 14217404 tcctcctggtcatcgtcctcgacgtgcacgtcgtcgctcggctc 14217447
>ref|XM_469244.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1128 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 52 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 96
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 26326816 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 26326772 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacga 87 ||||| ||||||||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 18123342 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcggtcggctccgttgatgacga 18123397 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| || ||||||||||||||| ||||| Sbjct: 25605274 tcctcctggtcgtcgtcctcgtcatgcacgtcgtcgctcagctcc 25605318 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tcgaggagtacgacgccgcc 406 |||||||||||||||||||| Sbjct: 25314268 tcgaggagtacgacgccgcc 25314249
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 63824 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 63868
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 26418125 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 26418081 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacga 87 ||||| ||||||||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 18116883 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcggtcggctccgttgatgacga 18116938 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| || ||||||||||||||| ||||| Sbjct: 25696583 tcctcctggtcgtcgtcctcgtcatgcacgtcgtcgctcagctcc 25696627 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tcgaggagtacgacgccgcc 406 |||||||||||||||||||| Sbjct: 25405577 tcgaggagtacgacgccgcc 25405558
>dbj|AK068539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151E13, full insert sequence Length = 1202 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 52 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 96
>dbj|AK062334.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-E02, full insert sequence Length = 707 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 48 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcgctcggctcc 92
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacga 87 ||||| ||||||||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 27947 tcctcctggtcgtcgtcctcgtcgtgcacgtcgtcggtcggctccgttgatgacga 28002
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacgacg 89 ||||| ||||||||||||| ||| |||||||||||||||||||| | || ||||||| Sbjct: 14203993 tcctcctggtcgtcgtccttgtcgcgcacgtcgtcgctcggctccatcgacgacgacg 14203936 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 tgcacgtcgtcgctcggctcc 76 ||||||||||||||||||||| Sbjct: 10862807 tgcacgtcgtcgctcggctcc 10862787 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| |||| ||| |||| |||||||||| ||||||||||||| Sbjct: 5006662 tcctcctggtagtcatcctcgtcgtgcacgttgtcgctcggctcc 5006706
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacgacg 89 ||||| ||||||||||||| |||||||||||||||||| ||||| | || ||||||| Sbjct: 30404631 tcctcctggtcgtcgtcctcatcgtgcacgtcgtcgctcagctccctcgacgacgacg 30404574 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||||||||||||||||||| Sbjct: 34594315 gaggacctcgacgcgctcgtctccgtcac 34594287 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||| ||||| |||||||| ||||||||||||||| Sbjct: 15085730 tcctcctggtcgtggtcctcatcgtgcacatcgtcgctcggctcc 15085774 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 32301488 gaggacctcgacgtgctcgtctccgtcac 32301516
>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O02 Length = 176625 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacgacg 89 ||||| ||||||||||||| ||| |||||||||||||||||||| | || ||||||| Sbjct: 47457 tcctcctggtcgtcgtccttgtcgcgcacgtcgtcgctcggctccatcgacgacgacg 47400
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacgacg 89 ||||| ||||||||||||| |||||||||||||||||| ||||| | || ||||||| Sbjct: 85491 tcctcctggtcgtcgtcctcatcgtgcacgtcgtcgctcagctccctcgacgacgacg 85434
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctccttggatgacgacg 89 ||||| ||||||||||||| |||||||||||||||||| ||||| | || ||||||| Sbjct: 10679 tcctcctggtcgtcgtcctcatcgtgcacgtcgtcgctcagctccctcgacgacgacg 10622
>ref|XM_468319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1524 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||||||||||||||||||| Sbjct: 310 gaggacctcgacgcgctcgtctccgtcac 338
>ref|XM_465430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 862 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||| ||||| |||||||| ||||||||||||||| Sbjct: 518 tcctcctggtcgtggtcctcatcgtgcacatcgtcgctcggctcc 562
>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077L08, complete sequence Length = 115640 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 53 tcgtgcacgtcgtcgctcggctccttggatgacgacg 89 |||||||||||||||||||||||| | || ||||||| Sbjct: 35457 tcgtgcacgtcgtcgctcggctcccttgacgacgacg 35493
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||||||||| || ||||||||||||||| ||||| Sbjct: 97077 tcctcctggtcgtcgtcctcgtcatgcacgtcgtcgctcagctcc 97033
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 53 tcgtgcacgtcgtcgctcggctccttggatgacgacg 89 |||||||||||||||||||||||| | || ||||||| Sbjct: 1856683 tcgtgcacgtcgtcgctcggctcccttgacgacgacg 1856719 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 20796962 gaggacctcgacgtgctcgtctccgtcac 20796990 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 ccgtcgaccgctccctccaat 257 ||||||||||||||||||||| Sbjct: 3155716 ccgtcgaccgctccctccaat 3155696
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0533E11 Length = 150678 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||| ||||| |||||||| ||||||||||||||| Sbjct: 91511 tcctcctggtcgtggtcctcatcgtgcacatcgtcgctcggctcc 91555
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||||||||||||||||||| Sbjct: 105255 gaggacctcgacgcgctcgtctccgtcac 105227
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||||||||||||||||||| Sbjct: 60930 gaggacctcgacgcgctcgtctccgtcac 60902
>dbj|AK063947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E12, full insert sequence Length = 1601 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||||||||||||||||||| Sbjct: 841 gaggacctcgacgcgctcgtctccgtcac 869
>dbj|AK063216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D12, full insert sequence Length = 862 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| ||||||| ||||| |||||||| ||||||||||||||| Sbjct: 518 tcctcctggtcgtggtcctcatcgtgcacatcgtcgctcggctcc 562
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 30 cgtcctcgtggtcgtcgtcctgctcgtgcac 60 ||||||||||||||||| |||||||| |||| Sbjct: 5168154 cgtcctcgtggtcgtcggcctgctcgggcac 5168184
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 aacgccgccgatctcgccgccc 485 |||||||||||||||||||||| Sbjct: 4460763 aacgccgccgatctcgccgccc 4460742
>gb|AY040246.2| Triticum aestivum Na+/H+ antiporter (NHX2) mRNA, complete cds Length = 2422 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 373 cctcggccacctgctcgaggag 394 |||||||||||||||||||||| Sbjct: 120 cctcggccacctgctcgaggag 141
>gb|AF277454.1|AF277454 Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds Length = 1762 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 229 cgtcctctccgtcgaccgctcc 250 |||||||||||||||||||||| Sbjct: 358 cgtcctctccgtcgaccgctcc 379
>ref|NM_185269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 441 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 ccgtcgaccgctccctccaat 257 ||||||||||||||||||||| Sbjct: 161 ccgtcgaccgctccctccaat 181
>ref|XM_475252.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 313 gaggacctcgacgtgctcgtctccgtcac 341
>ref|XM_467963.1| Oryza sativa (japonica cultivar-group), mRNA Length = 852 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 571 gaggacctcgacgtgctcgtctccgtcac 599
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 ccgtcgaccgctccctccaat 257 ||||||||||||||||||||| Sbjct: 33433 ccgtcgaccgctccctccaat 33413
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 110186 gaggacctcgacgtgctcgtctccgtcac 110214
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 467 gccgccgatctcgccgcccaccccg 491 |||||||||| |||||||||||||| Sbjct: 2934716 gccgccgatcccgccgcccaccccg 2934740
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 52767 gaggacctcgacgtgctcgtctccgtcac 52795
>gb|BT009130.1| Triticum aestivum clone wl1n.pk0029.c7:fis, full insert mRNA sequence Length = 1781 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgtcctctccgtcgaccgctc 249 ||||||||||||||||||||| Sbjct: 338 cgtcctctccgtcgaccgctc 358
>ref|XM_964647.1| PREDICTED: Tribolium castaneum similar to CG1130-PA (LOC658241), mRNA Length = 1266 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 gtcctcgtggtcgtcgtcctgctcg 55 ||||| ||||||||||||||||||| Sbjct: 81 gtcctggtggtcgtcgtcctgctcg 57
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 30 cgtcctcgtggtcgtcgtcctgctcgtgcacgt 62 ||||||||| ||||||||||| |||||||||| Sbjct: 1177178 cgtcctcgtcgtcgtcgtcctcatcgtgcacgt 1177146
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 acctcggccacctgctcgagg 392 ||||||||||||||||||||| Sbjct: 1563323 acctcggccacctgctcgagg 1563303 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 cgccgcccaccccgtcgtcc 497 |||||||||||||||||||| Sbjct: 2227632 cgccgcccaccccgtcgtcc 2227613
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 145501 gaggacctcgacgtgctcgtctccgtcac 145529
>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0055N24 Length = 142702 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 tgcacgtcgtcgctcggctcc 76 ||||||||||||||||||||| Sbjct: 89173 tgcacgtcgtcgctcggctcc 89153
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 32 tcctcgtggtcgtcgtcctgctcgtgcacgtcgtcgctcggctcc 76 ||||| |||| ||| |||| |||||||||| ||||||||||||| Sbjct: 48776 tcctcctggtagtcatcctcgtcgtgcacgttgtcgctcggctcc 48820
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 77320 gaggacctcgacgtgctcgtctccgtcac 77348
>dbj|AK120642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154O20, full insert sequence Length = 1856 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 874 gaggacctcgacgtgctcgtctccgtcac 902
>dbj|AK105306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A12, full insert sequence Length = 1722 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 gaggacctagacgcgctcgtctccgtcac 360 |||||||| |||| ||||||||||||||| Sbjct: 740 gaggacctcgacgtgctcgtctccgtcac 768
>ref|NM_211316.1| Eremothecium gossypii AFR414Wp (AFR414W), mRNA Length = 819 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 30 cgtcctcgtggtcgtcgtcctgctcgtgcacgt 62 ||||||||| ||||||||||| |||||||||| Sbjct: 337 cgtcctcgtcgtcgtcgtcctcatcgtgcacgt 305
>dbj|AK070869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023070E07, full insert sequence Length = 876 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 ccgtcgaccgctccctccaat 257 ||||||||||||||||||||| Sbjct: 234 ccgtcgaccgctccctccaat 254
>gb|AY104150.1| Zea mays PCO139907 mRNA sequence Length = 1888 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgtcctctccgtcgaccgctc 249 ||||||||||||||||||||| Sbjct: 360 cgtcctctccgtcgaccgctc 380
>ref|NM_105139.3| Arabidopsis thaliana copper ion binding / electron transporter AT1G64640 mRNA, complete cds Length = 1340 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 247 ccctccaatttcaagagctgcaac 270
>ref|NM_105138.3| Arabidopsis thaliana kinase/ transcription factor AT1G64630 mRNA, complete cds Length = 2718 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 2708 ccctccaatttcaagagctgcaac 2685
>ref|XM_469073.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tcgaggagtacgacgccgcc 406 |||||||||||||||||||| Sbjct: 29 tcgaggagtacgacgccgcc 48
>gb|AE009059.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 85 of 256 of the complete sequence Length = 11712 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cgccgccgatctcgccgccc 485 |||||||||||||||||||| Sbjct: 7170 cgccgccgatctcgccgccc 7151
>ref|XM_657525.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5013.2), mRNA Length = 1860 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cggctccagccgctcaagat 435 |||||||||||||||||||| Sbjct: 98 cggctccagccgctcaagat 117
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 cgccgccgatctcgccgccc 485 |||||||||||||||||||| Sbjct: 3106709 cgccgccgatctcgccgccc 3106728
>gb|BT012397.1| Arabidopsis thaliana At1g64640 mRNA, complete cds Length = 576 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 241 ccctccaatttcaagagctgcaac 264
>gb|BT012210.1| Arabidopsis thaliana At1g64640 gene, complete cds Length = 803 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 286 ccctccaatttcaagagctgcaac 309
>gb|AY077731.2| Podospora anserina thioredoxin II (trx2) gene, complete cds Length = 1369 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tcgccgcccaccccgtcgtc 496 |||||||||||||||||||| Sbjct: 332 tcgccgcccaccccgtcgtc 351
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 acgccgccgatctcgccgcc 484 |||||||||||||||||||| Sbjct: 696667 acgccgccgatctcgccgcc 696686
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cgccgccgatctcgccgccc 485 |||||||||||||||||||| Sbjct: 4685409 cgccgccgatctcgccgccc 4685390
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tcgaggagtacgacgccgcc 406 |||||||||||||||||||| Sbjct: 129092 tcgaggagtacgacgccgcc 129111
>emb|X55942.1|SCWHIE S. coelicolor whiE locus DNA Length = 5749 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 22 ggcgggcgcgtcctcgtggtcgtcgtcc 49 |||||||||||||||| ||||| ||||| Sbjct: 1213 ggcgggcgcgtcctcggggtcgccgtcc 1186
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 acgccgccgatctcgccgcc 484 |||||||||||||||||||| Sbjct: 107816 acgccgccgatctcgccgcc 107835
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 ggcgggcgcgtcctcgtggtcgtcgtcc 49 |||||||||||||||| ||||| ||||| Sbjct: 109319 ggcgggcgcgtcctcggggtcgccgtcc 109346
>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain ATCC12853 Length = 47050 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtgcggatgggaggcgatga 308 |||||||||||||||||||| Sbjct: 21083 gtgcggatgggaggcgatga 21064
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cgtcggcggcaacaaccgcg 230 |||||||||||||||||||| Sbjct: 774622 cgtcggcggcaacaaccgcg 774641
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cgccgccgatctcgccgccc 485 |||||||||||||||||||| Sbjct: 935742 cgccgccgatctcgccgccc 935723
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tcgccgcccaccccgtcgtc 496 |||||||||||||||||||| Sbjct: 3613830 tcgccgcccaccccgtcgtc 3613849
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 acgccgccgatctcgccgcc 484 |||||||||||||||||||| Sbjct: 345407 acgccgccgatctcgccgcc 345426
>emb|BX817979.1|CNS0ACGE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 706 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 233 ccctccaatttcaagagctgcaac 256
>emb|BX817707.1|CNS0ACG9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 674 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 233 ccctccaatttcaagagctgcaac 256
>emb|BX934749.1| Gallus gallus finished cDNA, clone ChEST722g7 Length = 1116 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cgtcctcgtggtcgtcgtcctgct 53 ||||||||| |||||||||||||| Sbjct: 173 cgtcctcgtcgtcgtcgtcctgct 150
>emb|BX930516.1| Gallus gallus finished cDNA, clone ChEST632k4 Length = 979 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cgtcctcgtggtcgtcgtcctgct 53 ||||||||| |||||||||||||| Sbjct: 34 cgtcctcgtcgtcgtcgtcctgct 11
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I, complete sequence Length = 113172 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccctccaatttcacgagctgcaac 272 ||||||||||||| |||||||||| Sbjct: 91105 ccctccaatttcaagagctgcaac 91082
>gb|AC104512.11| Drosophila melanogaster BAC RP98-39C15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172654 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tcgtggtcgtcgtcctgctc 54 |||||||||||||||||||| Sbjct: 108586 tcgtggtcgtcgtcctgctc 108605
>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, complete cds Length = 25467 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtgcggatgggaggcgatga 308 |||||||||||||||||||| Sbjct: 3792 gtgcggatgggaggcgatga 3773
>ref|XM_310815.2| Anopheles gambiae str. PEST ENSANGP00000015576 (ENSANGG00000013087), partial mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tggtctgcatcgtgaagccg 112 |||||||||||||||||||| Sbjct: 338 tggtctgcatcgtgaagccg 357
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 aaaacgccgccgatctcgcc 481 |||||||||||||||||||| Sbjct: 866015 aaaacgccgccgatctcgcc 865996
>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete sequence Length = 316794 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tcgtggtcgtcgtcctgctc 54 |||||||||||||||||||| Sbjct: 35086 tcgtggtcgtcgtcctgctc 35067
>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster, strain DSM 40500 Length = 41576 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtgcggatgggaggcgatga 308 |||||||||||||||||||| Sbjct: 17856 gtgcggatgggaggcgatga 17837
>gb|M88749.1|ICHVITGN Lamprey vitellogenin mRNA, complete cds Length = 5976 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggcgggcgcgtcctcgtgg 40 |||||||||||||||||||| Sbjct: 1065 tggcgggcgcgtcctcgtgg 1046 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,643,032 Number of Sequences: 3902068 Number of extensions: 2643032 Number of successful extensions: 57258 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55518 Number of HSP's gapped (non-prelim): 1726 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
