ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTA_STRPU (P04734) Metallothionein-A (MTA) 33 0.71
2MT_STENE (P55953) Metallothionein (MT) 32 1.6
3MSL2_DROME (P50534) Protein male-specific lethal-2 31 3.5
4LCTP_BACSU (P55910) L-lactate permease 30 4.6
5Y46K_DROME (P53404) Hypothetical protein CG10349 in chromosome 3 30 4.6
6MTB_STRPU (Q27287) Metallothionein-B (MTB) 30 6.0

>MTA_STRPU (P04734) Metallothionein-A (MTA)|
          Length = 64

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 631 CVVCSEEVLQSCWGITCCWASECEFDNCCC 542
           CV C E    +C+G  CC   EC  D  CC
Sbjct: 6   CVCCKEGKECACFGQDCCKTGECCKDGTCC 35



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>MT_STENE (P55953) Metallothionein (MT)|
          Length = 64

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 631 CVVCSEEVLQSCWGITCCWASECEFDNCCC 542
           CV C E    +C G  CC   EC  D  CC
Sbjct: 6   CVCCKEGKECACKGKECCTTGECCKDGTCC 35



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>MSL2_DROME (P50534) Protein male-specific lethal-2|
          Length = 773

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +3

Query: 423 RNSTCSCYRNYSSSH*CH-----NPQLHSHDY 503
           RNS C CY++Y+S   CH     NP  H  DY
Sbjct: 540 RNSRCPCYKSYNSCAGCHCVCCKNP--HKEDY 569



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>LCTP_BACSU (P55910) L-lactate permease|
          Length = 541

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +1

Query: 22  RQLYMQNHILQQNSMQFNPPKLHQQMKPINDLSNAALPLN 141
           + L+ +  +L Q+++ F  P LHQQ+  +  ++ +A+PL+
Sbjct: 315 KALFQEGGLLYQSTLLFKMPFLHQQIMKMPPIAPSAMPLD 354



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>Y46K_DROME (P53404) Hypothetical protein CG10349 in chromosome 3|
          Length = 404

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 34  MQNHILQQNSMQFNPPKLHQQMKPINDLSNAALPLN-QLGAIRN 162
           M+     ++S+ F PP  +QQM  +N    AA+P++ QL  IRN
Sbjct: 1   MEEQSPPRDSLLFGPPTEYQQMPKVNLFRVAAIPVDVQLQRIRN 44



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>MTB_STRPU (Q27287) Metallothionein-B (MTB)|
          Length = 65

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 631 CVVCSEEVLQSCWGITCCWASECEFDNCCC 542
           CV C E    +C G  CC   +C  D  CC
Sbjct: 6   CVCCKEGNECACTGQDCCTIGKCCKDGTCC 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,805,443
Number of Sequences: 219361
Number of extensions: 975802
Number of successful extensions: 2471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2458
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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