ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3k05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P15, full insert sequence Length = 1185 Score = 258 bits (130), Expect = 1e-65 Identities = 256/298 (85%) Strand = Plus / Plus Query: 141 tcatggcagactacgagcaggaacaggagatggagttggaggccctccaggccatcctca 200 ||||||| || ||||||||||| |||||||||||| |||||||||| ||||||||||||| Sbjct: 205 tcatggctgattacgagcaggagcaggagatggaggtggaggccctgcaggccatcctca 264 Query: 201 tggacgacatcaaggagatcgaccccagtgaaagcgggatcgacaccaactcccgctgct 260 |||||||||||||||||||||||||||| || |||||| || ||||| | ||||||| Sbjct: 265 tggacgacatcaaggagatcgaccccagcgagagcgggctcagcaccacggctcgctgct 324 Query: 261 tcgagatcctgctatcccctcaggacgatgatttcgacgaggcagctcatgtgccagttc 320 || ||||| |||| ||||||||||| ||||||||||| ||| | ||| |||||||||| | Sbjct: 325 tccagatcgtgctctcccctcaggatgatgatttcgatgagtcggcttatgtgccagtcc 384 Query: 321 aaatggctcttgtttttgcacacactgagaagtacccagatgagcctccacttgtgaata 380 || ||||||| ||||||||||||| || || || || ||||||||||| ||| ||||| Sbjct: 385 aactggctctgatttttgcacacaccgaaaaatatccggatgagcctccgcttttgaatg 444 Query: 381 tcaaaagtgtacggggtattaaaccagacgacctcacatccttgaaagaaaagcttga 438 ||||||||||||| || || ||| |||| || || |||||||||||||||||||||| Sbjct: 445 tcaaaagtgtacgaggaatgaaatcagaagatcttgcatccttgaaagaaaagcttga 502
>ref|NM_193485.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 891 Score = 214 bits (108), Expect = 2e-52 Identities = 204/236 (86%) Strand = Plus / Plus Query: 152 tacgagcaggaacaggagatggagttggaggccctccaggccatcctcatggacgacatc 211 ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 142 tacgagcaggagcaggagatggaggtggaggccctgcaggccatcctcatggacgacatc 201 Query: 212 aaggagatcgaccccagtgaaagcgggatcgacaccaactcccgctgcttcgagatcctg 271 ||||||||||||||||| || |||||| || ||||| | ||||||||| ||||| || Sbjct: 202 aaggagatcgaccccagcgagagcgggctcagcaccacggctcgctgcttccagatcgtg 261 Query: 272 ctatcccctcaggacgatgatttcgacgaggcagctcatgtgccagttcaaatggctctt 331 || ||||||||||| ||||||||||| ||| | ||| |||||||||| ||| ||||||| Sbjct: 262 ctctcccctcaggatgatgatttcgatgagtcggcttatgtgccagtccaactggctctg 321 Query: 332 gtttttgcacacactgagaagtacccagatgagcctccacttgtgaatatcaaaag 387 ||||||||||||| || || || || ||||||||||| ||| ||||| ||||||| Sbjct: 322 atttttgcacacaccgaaaaatatccggatgagcctccgcttttgaatgtcaaaag 377
>gb|AY111066.1| Zea mays CL8842_1 mRNA sequence Length = 1042 Score = 212 bits (107), Expect = 7e-52 Identities = 249/298 (83%) Strand = Plus / Minus Query: 141 tcatggcagactacgagcaggaacaggagatggagttggaggccctccaggccatcctca 200 ||||||| |||||||||||||| ||||| |||||| ||||||| || ||||||||||||| Sbjct: 947 tcatggccgactacgagcaggagcaggatatggaggtggaggcactgcaggccatcctca 888 Query: 201 tggacgacatcaaggagatcgaccccagtgaaagcgggatcgacaccaactcccgctgct 260 ||||||||||||||||||||||||| ||||| || ||||||| ||||| | |||| |||| Sbjct: 887 tggacgacatcaaggagatcgacccgagtgagagtgggatcgccaccaccgcccggtgct 828 Query: 261 tcgagatcctgctatcccctcaggacgatgatttcgacgaggcagctcatgtgccagttc 320 || ||||||| || || |||||||| |||||||| || ||| ||||| |||| ||||||| Sbjct: 827 tccagatcctactctctcctcaggatgatgattttgatgagtcagcttatgtcccagttc 768 Query: 321 aaatggctcttgtttttgcacacactgagaagtacccagatgagcctccacttgtgaata 380 || |||| || || ||||||||||||||||| ||||| |||||||| | ||| Sbjct: 767 aactggccctgannnnngcgcacactgagaagtaccccgatgaacctccactactaaatg 708 Query: 381 tcaaaagtgtacggggtattaaaccagacgacctcacatccttgaaagaaaagcttga 438 | ||||||||||| || ||||||||| | || || ||||| |||| ||||||||||| Sbjct: 707 tgaaaagtgtacgagggattaaaccacatgatcttgcatccctgaaggaaaagcttga 650
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 5e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 152 tacgagcaggaacaggagatggagttggaggccctccaggccatcctcatggacgacatc 211 ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 21124120 tacgagcaggagcaggagatggaggtggaggccctgcaggccatcctcatggacgacatc 21124061 Query: 212 aagg 215 |||| Sbjct: 21124060 aagg 21124057 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 315 cagttcaaatggctcttgtttttgcacacactgagaagtacccagatgagcctccacttg 374 |||| ||| ||||||| ||||||||||||| || || || || ||||||||||| ||| Sbjct: 21123520 cagtccaactggctctgatttttgcacacaccgaaaaatatccggatgagcctccgcttt 21123461 Query: 375 tgaatatcaaaag 387 ||||| ||||||| Sbjct: 21123460 tgaatgtcaaaag 21123448 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Minus Query: 215 gagatcgaccccagtgaaagcgggatcgacaccaactcccgctgcttcgagatcctgcta 274 |||||||||||||| || |||||| || ||||| | ||||||||| ||||| |||| Sbjct: 21123918 gagatcgaccccagcgagagcgggctcagcaccacggctcgctgcttccagatcgtgctc 21123859 Query: 275 tcccctcagg 284 |||||||||| Sbjct: 21123858 tcccctcagg 21123849 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 catccttgaaagaaaagcttga 438 |||||||||||||||||||||| Sbjct: 21123281 catccttgaaagaaaagcttga 21123260
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 103 bits (52), Expect = 5e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 152 tacgagcaggaacaggagatggagttggaggccctccaggccatcctcatggacgacatc 211 ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 91665 tacgagcaggagcaggagatggaggtggaggccctgcaggccatcctcatggacgacatc 91606 Query: 212 aagg 215 |||| Sbjct: 91605 aagg 91602 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 315 cagttcaaatggctcttgtttttgcacacactgagaagtacccagatgagcctccacttg 374 |||| ||| ||||||| ||||||||||||| || || || || ||||||||||| ||| Sbjct: 91065 cagtccaactggctctgatttttgcacacaccgaaaaatatccggatgagcctccgcttt 91006 Query: 375 tgaatatcaaaag 387 ||||| ||||||| Sbjct: 91005 tgaatgtcaaaag 90993 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Minus Query: 215 gagatcgaccccagtgaaagcgggatcgacaccaactcccgctgcttcgagatcctgcta 274 |||||||||||||| || |||||| || ||||| | ||||||||| ||||| |||| Sbjct: 91463 gagatcgaccccagcgagagcgggctcagcaccacggctcgctgcttccagatcgtgctc 91404 Query: 275 tcccctcagg 284 |||||||||| Sbjct: 91403 tcccctcagg 91394 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 catccttgaaagaaaagcttga 438 |||||||||||||||||||||| Sbjct: 90826 catccttgaaagaaaagcttga 90805
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 103 bits (52), Expect = 5e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 152 tacgagcaggaacaggagatggagttggaggccctccaggccatcctcatggacgacatc 211 ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 21629 tacgagcaggagcaggagatggaggtggaggccctgcaggccatcctcatggacgacatc 21570 Query: 212 aagg 215 |||| Sbjct: 21569 aagg 21566 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 315 cagttcaaatggctcttgtttttgcacacactgagaagtacccagatgagcctccacttg 374 |||| ||| ||||||| ||||||||||||| || || || || ||||||||||| ||| Sbjct: 21029 cagtccaactggctctgatttttgcacacaccgaaaaatatccggatgagcctccgcttt 20970 Query: 375 tgaatatcaaaag 387 ||||| ||||||| Sbjct: 20969 tgaatgtcaaaag 20957 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Minus Query: 215 gagatcgaccccagtgaaagcgggatcgacaccaactcccgctgcttcgagatcctgcta 274 |||||||||||||| || |||||| || ||||| | ||||||||| ||||| |||| Sbjct: 21427 gagatcgaccccagcgagagcgggctcagcaccacggctcgctgcttccagatcgtgctc 21368 Query: 275 tcccctcagg 284 |||||||||| Sbjct: 21367 tcccctcagg 21358 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 catccttgaaagaaaagcttga 438 |||||||||||||||||||||| Sbjct: 20790 catccttgaaagaaaagcttga 20769
>gb|AY022647.1| Oryza sativa microsatellite MRG4972 containing (CAT)X8, genomic sequence Length = 224 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Minus Query: 215 gagatcgaccccagtgaaagcgggatcgacaccaactcccgctgcttcgagatcctgcta 274 |||||||||||||| || |||||| || ||||| | ||||||||| ||||| |||| Sbjct: 98 gagatcgaccccagcgagagcgggctcagcaccacggctcgctgcttccagatcgtgctc 39 Query: 275 tcccctcagg 284 |||||||||| Sbjct: 38 tcccctcagg 29
>ref|XM_653545.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1033.2), mRNA Length = 1323 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 atggcagactacgagcaggaacagga 168 ||||||||| |||||||||||||||| Sbjct: 1 atggcagaccacgagcaggaacagga 26
>gb|AF257470.1| Equus caballus calcitonin gene related peptide II precursor, mRNA, complete cds Length = 960 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gagcaggaacaggagatggag 175 ||||||||||||||||||||| Sbjct: 271 gagcaggaacaggagatggag 291
>emb|AL356053.14| Human DNA sequence from clone RP11-453G10 on chromosome 10 Contains part of a novel gene (FLJ13031) (FLJ40349), complete sequence Length = 176355 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 gttggaggccctccaggccatcctc 199 |||||||| |||||||||||||||| Sbjct: 36386 gttggaggacctccaggccatcctc 36410
>emb|AL355540.12| Human DNA sequence from clone RP5-1104A8 on chromosome 1. Contains part of a novel gene, ESTs, STSs and GSSs, complete sequence Length = 120219 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 gttggaggccctccaggccatcctc 199 |||||||| |||||||||||||||| Sbjct: 34323 gttggaggacctccaggccatcctc 34299
>gb|M83696.1|TRBSURGLYC Trypanosoma brucei (clone WaTat1.13) surface glycoprotein (VSG) mRNA, complete cds Length = 1682 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gagcaggaacaggagatggag 175 ||||||||||||||||||||| Sbjct: 1418 gagcaggaacaggagatggag 1438
>gb|M83695.1|TRBSURGLYB Trypanosoma brucei (clone WaTat1.12) surface glycoprotein (VSG) mRNA, complete cds Length = 1709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gagcaggaacaggagatggag 175 ||||||||||||||||||||| Sbjct: 1437 gagcaggaacaggagatggag 1457
>gb|M83694.1|TRBSURGLYA Trypanosoma brucei (clone WaTat1.1) surface glycoprotein (VSG) mRNA, complete cds Length = 1705 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gagcaggaacaggagatggag 175 ||||||||||||||||||||| Sbjct: 1437 gagcaggaacaggagatggag 1457
>ref|NM_105903.2| Arabidopsis thaliana unknown protein AT1G72440 mRNA, complete cds Length = 3331 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agcatcagagtaagaagcaa 125 |||||||||||||||||||| Sbjct: 3159 agcatcagagtaagaagcaa 3178
>gb|AC160016.2| Mus musculus BAC clone RP24-421D3 from chromosome 9, complete sequence Length = 186944 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 agtacccagatgagcctcca 370 |||||||||||||||||||| Sbjct: 85877 agtacccagatgagcctcca 85858
>gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P15, complete sequence Length = 130539 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 agcaggaacaggagatggag 175 |||||||||||||||||||| Sbjct: 117444 agcaggaacaggagatggag 117425
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cccgcagccgcagcctttcc 44 |||||||||||||||||||| Sbjct: 23509 cccgcagccgcagcctttcc 23490
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 agcaggaacaggagatggag 175 |||||||||||||||||||| Sbjct: 1648719 agcaggaacaggagatggag 1648700
>gb|AC159440.1| Trypanosoma brucei chromosome 3 clone RPCI93-2H15, complete sequence Length = 152294 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 agcaggaacaggagatggag 175 |||||||||||||||||||| Sbjct: 147788 agcaggaacaggagatggag 147769
>ref|XM_426502.1| PREDICTED: Gallus gallus similar to branching-enzyme interacting dual-specificity protein phosphatase BEDP (LOC428947), mRNA Length = 3189 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cgcagcctttccgccgccgc 52 |||||||||||||||||||| Sbjct: 390 cgcagcctttccgccgccgc 409
>ref|XM_421798.1| PREDICTED: Gallus gallus similar to transforming, acidic coiled-coil containing protein 2 isoform c; anti zuai-1 (LOC423939), mRNA Length = 4167 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 ccacttgtgaatatcaaaagtgta 391 |||||||| ||||||||||||||| Sbjct: 1626 ccacttgtcaatatcaaaagtgta 1603
>gb|AY283241.1| Petunia integrifolia subsp. inflata S1 self-incompatibility locus-linked pollen G211 protein (S1-G211) gene, partial cds Length = 2054 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaatggctcttgtttttgca 340 |||||||||||||||||||| Sbjct: 422 aaatggctcttgtttttgca 441
>gb|AY283240.1| Petunia integrifolia subsp. inflata S2 self-incompatibility locus-linked pollen G211 protein (S2-G211) mRNA, partial cds Length = 404 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaatggctcttgtttttgca 340 |||||||||||||||||||| Sbjct: 341 aaatggctcttgtttttgca 360
>gb|AY283239.1| Petunia integrifolia subsp. inflata S1 self-incompatibility locus-linked pollen G211 protein (S1-G211) mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaatggctcttgtttttgca 340 |||||||||||||||||||| Sbjct: 1122 aaatggctcttgtttttgca 1141
>ref|XM_752162.1| Ustilago maydis 521 hypothetical protein (UM01108.1) partial mRNA Length = 756 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 gcagcctttccgccgccgct 53 |||||||||||||||||||| Sbjct: 473 gcagcctttccgccgccgct 492
>ref|XM_798286.1| Trypanosoma brucei TREU927 variant surface glycoprotein (Tb09.142.0240) partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 agcaggaacaggagatggag 175 |||||||||||||||||||| Sbjct: 1383 agcaggaacaggagatggag 1402
>ref|XM_569357.1| Cryptococcus neoformans var. neoformans JEC21 chitin synthase (CNC00050) partial mRNA Length = 3185 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cccgcagccgcagcctttcc 44 |||||||||||||||||||| Sbjct: 66 cccgcagccgcagcctttcc 85
>emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chromosome 6 Contains part of a novel gene (FLJ00197), complete sequence Length = 60858 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ttcaaatggctcttgttttt 337 |||||||||||||||||||| Sbjct: 44118 ttcaaatggctcttgttttt 44137
>emb|AL356416.8| Human DNA sequence from clone RP11-245E3 on chromosome 13, complete sequence Length = 76174 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 tccacttgtgaatatcaaaagtgt 390 ||||||||| |||||||||||||| Sbjct: 48146 tccacttgtaaatatcaaaagtgt 48123
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 25 cccgcagccgcagcctttccgccgccgc 52 |||||| |||| |||||||||||||||| Sbjct: 111387 cccgcacccgccgcctttccgccgccgc 111414
>emb|AL591984.1| Listeria monocytogenes strain EGD, complete genome, segment 12/12 Length = 225528 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaatggctcttgtttttgca 340 |||||||||||||||||||| Sbjct: 212202 aaatggctcttgtttttgca 212221
>emb|CR376846.9| Zebrafish DNA sequence from clone CH211-240P12 in linkage group 1, complete sequence Length = 145408 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cctccaggccatcctcatgg 203 |||||||||||||||||||| Sbjct: 61029 cctccaggccatcctcatgg 61010
>emb|CR788323.5| Zebrafish DNA sequence from clone DKEYP-71G11 in linkage group 2, complete sequence Length = 107248 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aatggctcttgtttttgcac 341 |||||||||||||||||||| Sbjct: 73464 aatggctcttgtttttgcac 73445
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gcgacgcccgcagccgcagc 38 |||||||||||||||||||| Sbjct: 3052952 gcgacgcccgcagccgcagc 3052933
>gb|AE005888.1| Caulobacter crescentus CB15 section 214 of 359 of the complete genome Length = 12494 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 ggcgacgcccgcagccgcagcctt 41 ||||||| |||||||||||||||| Sbjct: 8636 ggcgacggccgcagccgcagcctt 8613
>emb|CR524009.1| Gallus gallus finished cDNA, clone ChEST697p16 Length = 1301 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 ccacttgtgaatatcaaaagtgta 391 |||||||| ||||||||||||||| Sbjct: 1247 ccacttgtcaatatcaaaagtgta 1224
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 gacgacatcaaggagatcgacccc 226 ||||||||| |||||||||||||| Sbjct: 2198919 gacgacatcgaggagatcgacccc 2198896
>gb|AC148713.1| Macaca mulatta Major Histocompatibility Complex BAC MMU457F04, complete sequence Length = 149331 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 157 gcaggaacaggagatggagttggaggcc 184 ||||||||||| |||||||||||||||| Sbjct: 97792 gcaggaacagg-gatggagttggaggcc 97818
>gb|AC148699.1| Macaca mulatta Major Histocompatibility Complex BAC MMU274L13, complete sequence Length = 210164 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 157 gcaggaacaggagatggagttggaggcc 184 ||||||||||| |||||||||||||||| Sbjct: 120665 gcaggaacagg-gatggagttggaggcc 120691
>gb|AC148678.1| Macaca mulatta Major Histocompatibility Complex BAC MMU125A15, complete sequence Length = 172875 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 157 gcaggaacaggagatggagttggaggcc 184 ||||||||||| |||||||||||||||| Sbjct: 56387 gcaggaacagg-gatggagttggaggcc 56413
>dbj|AK085938.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830031P22 product:predicted gene Ym24d07, full insert sequence Length = 680 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 accggcgacgcccgcagccgcagc 38 ||||||||||| |||||||||||| Sbjct: 255 accggcgacgcacgcagccgcagc 232
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 25 cccgcagccgcagcctttccgccgccgc 52 |||||| |||| |||||||||||||||| Sbjct: 32592653 cccgcacccgccgcctttccgccgccgc 32592680
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 157 gcaggaacaggagatggagttggaggcc 184 ||||||||||| |||||||||||||||| Sbjct: 1004479 gcaggaacagg-gatggagttggaggcc 1004453
>gb|AC016529.7|AC016529 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence Length = 87039 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agcatcagagtaagaagcaa 125 |||||||||||||||||||| Sbjct: 44892 agcatcagagtaagaagcaa 44911
>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18, complete sequence Length = 212425 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 agaagtacccagatgagcct 367 |||||||||||||||||||| Sbjct: 141335 agaagtacccagatgagcct 141354
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaatggctcttgtttttgca 340 |||||||||||||||||||| Sbjct: 2891859 aaatggctcttgtttttgca 2891878
>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete sequence Length = 207372 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gccacaggtcatggcagact 152 |||||||||||||||||||| Sbjct: 129943 gccacaggtcatggcagact 129924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,736,949 Number of Sequences: 3902068 Number of extensions: 3736949 Number of successful extensions: 77736 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 77467 Number of HSP's gapped (non-prelim): 274 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
