ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3k04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUV3_DROME (P20193) Protein suppressor of variegation 3-7 33 0.48
2ZDH12_HUMAN (Q96GR4) Probable palmitoyltransferase ZDHHC12 (EC 2... 32 0.81
3ZDH12_RAT (Q6DGF5) Probable palmitoyltransferase ZDHHC12 (EC 2.3... 32 1.4
4ZDH12_MOUSE (Q8VC90) Probable palmitoyltransferase ZDHHC12 (EC 2... 31 2.4
5CQ028_MOUSE (Q8R1F6) Protein C17orf28 homolog 29 9.0
6SODM3_PLEBO (P50060) Superoxide dismutase [Mn] 3 precursor (EC 1... 29 9.0

>SUV3_DROME (P20193) Protein suppressor of variegation 3-7|
          Length = 1250

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 9    SKITTGGKPTLHRPQKE*LSVRITTGLILGGKRNNVCQNLICLYILVNATTRP 167
            SKIT    P + +PQ+   S+  +T ++ GG  +N CQ +     +VN   RP
Sbjct: 1199 SKITVTNTPQMQQPQQAQASITSSTPIMRGGPSSNGCQ-ITTFRTMVNHNRRP 1250



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>ZDH12_HUMAN (Q96GR4) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
           (Zinc finger protein 400)
          Length = 267

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -1

Query: 346 QRTSTSMDFGLTR*AHHLCCGWPLAEGGWAENHW 245
           QR S   D GLTR   H  CGWP   G W E  W
Sbjct: 225 QRPSNPFDRGLTRNLAHFFCGWP--SGSW-ETLW 255



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>ZDH12_RAT (Q6DGF5) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 346 QRTSTSMDFGLTR*AHHLCCGWPLA--EGGWAE 254
           QRTS   D G TR   H  CGWP    E  WAE
Sbjct: 225 QRTSNPFDRGPTRNLAHFFCGWPSGPWETLWAE 257



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>ZDH12_MOUSE (Q8VC90) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 346 QRTSTSMDFGLTR*AHHLCCGWPLAEGGW 260
           QRTS   D G TR   H  CGWP   G W
Sbjct: 225 QRTSNPFDRGPTRNLAHFFCGWP--SGPW 251



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>CQ028_MOUSE (Q8R1F6) Protein C17orf28 homolog|
          Length = 788

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -3

Query: 467 RVVEECSQQAAAHSSPDRSDSVRTTIS*KQLSETKPAWQGSADINKHGFWPDKVSSSSLL 288
           R +E  SQQ++A +SP   +S +T    ++LS    + Q S   +    W  K+   +++
Sbjct: 639 RSLEPESQQSSAENSPSDGESSQTWREQRRLSNASASGQWSPTSDWILSWKSKLPLQTIM 698

Query: 287 RL 282
           RL
Sbjct: 699 RL 700



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>SODM3_PLEBO (P50060) Superoxide dismutase [Mn] 3 precursor (EC 1.15.1.1)|
           (Fragment)
          Length = 239

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 212 KKIPFQAPSCSPMIFSPPSFCQRPTAAEMMSLP 310
           ++ P Q+P+ SP + +P ++  RP  A    LP
Sbjct: 4   QQTPAQSPTASPTVSTPVAYVDRPLTASPAQLP 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,160,355
Number of Sequences: 219361
Number of extensions: 1334256
Number of successful extensions: 3530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3529
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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