>gb|BT009579.1| Triticum aestivum clone wre1n.pk0036.g10:fis, full insert mRNA
           sequence
          Length = 857

 Score =  188 bits (95), Expect = 1e-44
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                       
Query: 381 cttctagcttatagttgtccgcaccgaatccgatcggtccggactgctgtgcgccgccgc 440
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 cttctaacttatagtcgtccgcaccgaatccgatcggtccggactgctgtgcgccgcggc 333

                                                                       
Query: 441 ttgttggctgcactcttcgacgaccctcgtcggcgtcctcgccttgagcatcatctcggc 500
            |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 334 ctgttggctgcactcctcgacaaccctcgtcggtgtcctagccttgagcatcatctcagc 393

                                  
Query: 501 gtactccgcctccgggtctgaca 523
            ||||||||||| ||||| ||||
Sbjct: 394 atactccgcctcagggtccgaca 416



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 333 gttgatgtccgctgaaccttgccacgctggtttagtttca 372
           ||||||||  |||||||||||| | | |||||||||||||
Sbjct: 215 gttgatgtatgctgaaccttgcaatgttggtttagtttca 254



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 41/47 (87%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                          
Query: 86  tttaattcttggggggaaacgaaataatgtatgccaaaatttgattt 132
           ||||||||||||||| ||||  || ||||||||||||  ||||||||
Sbjct: 25  tttaattcttgggggaaaac--aaaaatgtatgccaatttttgattt 69

>dbj|D38088.1|WHTPH2AB Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-3
          Length = 1153

 Score =  186 bits (94), Expect = 5e-44
 Identities = 127/138 (92%)
 Strand = Plus / Minus

                                                                       
Query: 381 cttctagcttatagttgtccgcaccgaatccgatcggtccggactgctgtgcgccgccgc 440
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 867 cttctaacttatagtcgtccgcaccgaatccgatcggtccggactgctgtgcgccgcggc 808

                                                                       
Query: 441 ttgttggctgcactcttcgacgaccctcgtcggcgtcctcgccttgagcatcatctcggc 500
            |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 807 ctgttggctgcactcctcgacaaccctcgtcggtgtcctagccttgagcatcatctcagc 748

                             
Query: 501 gtactccgcctccgggtc 518
            ||||||||||| |||||
Sbjct: 747 atactccgcctcagggtc 730



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/84 (85%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 49   cccaaaaagaatagctatcagtgcgcattaccactggtttaattcttggggggaaacgaa 108
            |||| ||| ||||||||||||||||||  | ||||| ||||||||||||||| ||||  |
Sbjct: 1153 cccagaaacaatagctatcagtgcgcaacatcactgttttaattcttgggggaaaac--a 1096

                                    
Query: 109  ataatgtatgccaaaatttgattt 132
            | ||||||||||||  ||||||||
Sbjct: 1095 aaaatgtatgccaatttttgattt 1072



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 333 gttgatgtccgctgaaccttgccacgctggtttagtttca 372
           ||||||||  |||||||||||| | | |||||||||||||
Sbjct: 926 gttgatgtatgctgaaccttgcaatgttggtttagtttca 887

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 492     catctcggcgtactccgcctc 512
               |||||||||||||||||||||
Sbjct: 1831026 catctcggcgtactccgcctc 1831006



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 495     ctcggcgtactccgcctccgg 515
               |||||||||||||||||||||
Sbjct: 1796725 ctcggcgtactccgcctccgg 1796705



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 492     catctcggcgtactccgcctc 512
               |||||||||||||||||||||
Sbjct: 1672340 catctcggcgtactccgcctc 1672320

>gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, complete sequence
          Length = 185212

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    cagagagctgcttctagctt 390
              ||||||||||||||||||||
Sbjct: 120944 cagagagctgcttctagctt 120925

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    tgttgatgtccgctgaacct 351
              ||||||||||||||||||||
Sbjct: 502656 tgttgatgtccgctgaacct 502675

>ref|NM_185868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 387

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 454 tcttcgacgaccctcgtcggcgtc 477
           |||||||||| |||||||||||||
Sbjct: 182 tcttcgacgagcctcgtcggcgtc 205

>gb|AC134869.4| Mus musculus BAC clone RP23-137C6 from chromosome 13, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gctggtttagtttcagagag 377
             ||||||||||||||||||||
Sbjct: 17284 gctggtttagtttcagagag 17265

>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11,
              complete sequence
          Length = 199348

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    caaaatttgatttgcctgtatatt 143
              |||||||||||||| |||||||||
Sbjct: 137071 caaaatttgatttggctgtatatt 137094

>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence
          Length = 166129

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   atgtatgccaaaatttgatt 131
             ||||||||||||||||||||
Sbjct: 12940 atgtatgccaaaatttgatt 12959

>gb|AC163900.3| Mus musculus BAC clone RP23-151K15 from chromosome 12, complete sequence
          Length = 200606

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    ctggtttagtttcagagagc 378
              ||||||||||||||||||||
Sbjct: 167188 ctggtttagtttcagagagc 167169

>gb|AC090875.9| Homo sapiens chromosome 8, clone RP11-724H22, complete sequence
          Length = 165505

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   atgtatgccaaaatttgatt 131
             ||||||||||||||||||||
Sbjct: 86948 atgtatgccaaaatttgatt 86929

>dbj|AK045807.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230311N19
           product:unclassifiable, full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 gctggtttagtttcagagag 377
           ||||||||||||||||||||
Sbjct: 160 gctggtttagtttcagagag 179

>dbj|AK038712.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230056J06
           product:unclassifiable, full insert sequence
          Length = 3155

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 gctggtttagtttcagagag 377
           ||||||||||||||||||||
Sbjct: 221 gctggtttagtttcagagag 240

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 120      caaaatttgatttgcctgtatatt 143
                |||||||||||||| |||||||||
Sbjct: 25008023 caaaatttgatttggctgtatatt 25008046

>ref|XM_573978.1| PREDICTED: Rattus norvegicus similar to hypothetical protein
            (LOC364670), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  gctggtttagtttcagagag 377
            ||||||||||||||||||||
Sbjct: 1615 gctggtttagtttcagagag 1596

>gb|AC125041.2| Mus musculus BAC clone RP23-337J19 from chromosome 12, complete
             sequence
          Length = 202288

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ctggtttagtttcagagagc 378
             ||||||||||||||||||||
Sbjct: 44339 ctggtttagtttcagagagc 44320

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     aataatgtatgccaaaattt 127
               ||||||||||||||||||||
Sbjct: 2789624 aataatgtatgccaaaattt 2789605

>emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-173D9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196023

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   tttcagagagctgcttctag 387
             ||||||||||||||||||||
Sbjct: 39175 tttcagagagctgcttctag 39156

>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence
          Length = 208909

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aaacgaaataatgtatgcca 121
              ||||||||||||||||||||
Sbjct: 183630 aaacgaaataatgtatgcca 183611

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 120      caaaatttgatttgcctgtatatt 143
                |||||||||||||| |||||||||
Sbjct: 25319613 caaaatttgatttggctgtatatt 25319636

>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence
          Length = 165641

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    gctggtttagtttcagagag 377
              ||||||||||||||||||||
Sbjct: 150648 gctggtttagtttcagagag 150629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,939,619
Number of Sequences: 3902068
Number of extensions: 3939619
Number of successful extensions: 68249
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68118
Number of HSP's gapped (non-prelim): 129
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)