ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3j14 |
|---|---|
| Clone Library Name | barley_pub |
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/116 (27%), Positives = 52/116 (44%) Frame = +3 Query: 195 LPPSPARSSIC*GEFWMGDHVVVNVDGLANTKDDGVAEKPSEAVLVAAVDMVEDGGEDEP 374 +PP P + W G L++ D ++ +E + D G P Sbjct: 104 VPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSL--DSGMRTP 161 Query: 375 LIPAAECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 L CRIC + L PC C+GS+K H+ C+ +W +E+G +CE+C+ +Y Sbjct: 162 L-----CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
>MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) Length = 246 Score = 55.1 bits (131), Expect = 2e-07 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRIC E + +NL PC C G+L H++C+++W + CE+CH ++ Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 253 Score = 54.7 bits (130), Expect = 2e-07 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRIC E S ++L PC C G+L HR+C++ W + CE+CH ++ Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) (RING finger protein 173) Length = 253 Score = 54.7 bits (130), Expect = 2e-07 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRIC E S ++L PC C G+L HR+C++ W + CE+CH ++ Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 218 Score = 54.7 bits (130), Expect = 2e-07 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRIC E S ++L PC C G+L HR+C++ W + CE+CH ++ Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) Length = 408 Score = 54.3 bits (129), Expect = 3e-07 Identities = 24/63 (38%), Positives = 36/63 (57%) Frame = +3 Query: 354 DGGEDEPLIPAAECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICH 533 D G PL CRIC + L PC C+GS+K H+ C+ +W +E+G +CE+C+ Sbjct: 154 DSGMRTPL-----CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCY 208 Query: 534 EQY 542 +Y Sbjct: 209 YKY 211
>MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) (RING finger protein 172) Length = 246 Score = 51.6 bits (122), Expect = 2e-06 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRIC E + + L PC C G+L H++C+++W + CE+CH ++ Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>SSM4_YEAST (P40318) Protein SSM4| Length = 1319 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Frame = +3 Query: 387 AECRICQEEDSIKN-LEKPCTCNGSLKYAHRACVQRWCNEK--------GDITCEICH 533 A CRIC+ E + N L PC C GS+KY H +C+ W K D+ C+ICH Sbjct: 37 ATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICH 94
>STATB_CAEEL (Q20977) Signal transducer and activator of transcription b (Zinc| finger protein STAT-B) Length = 966 Score = 49.3 bits (116), Expect = 9e-06 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 CRICQ + ++ +PC C G++ H C+ +W N TCEIC +Y Sbjct: 52 CRICQMHEG--DMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEY 99
>VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1| Length = 285 Score = 46.2 bits (108), Expect = 7e-05 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQYK 545 +C IC++ +S+ + C C G L+Y H C++ W + G+ C+ C YK Sbjct: 131 QCWICRDGESLPEA-RYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYK 181
>VC07_SWPVK (P32225) Hypothetical protein C7| Length = 155 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 9/69 (13%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY------KP-- 548 C IC+++ SI+ + C C K H C+++W + +C++C+++Y KP Sbjct: 5 CWICKDDYSIE--KNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISVRKPFS 62 Query: 549 -WVHSTTTC 572 WV S C Sbjct: 63 QWVFSIKDC 71
>MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-) (MIR2)| (IE1A protein) (ORF K5) Length = 256 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQYK 545 C IC+EE + + PC C G L H C+ W + C++C Y+ Sbjct: 15 CWICREEVGNEGIH-PCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYR 64
>MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-) (MIR1)| (IE1B protein) (ORF K3) Length = 333 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = +3 Query: 363 EDEPLIPAAECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 ED P+ C IC EE + + C C G L+ HR+C+ W + C+IC Y Sbjct: 4 EDVPV-----CWICNEELGNERF-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57
>MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (EC 6.3.2.-)| (MK3) (ORF K3) Length = 201 Score = 35.0 bits (79), Expect = 0.17 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 393 CRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 C IC + + L++ C C GS +H+ C++ W TC +C Y Sbjct: 8 CWICHQPEG--PLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPY 55
>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)| (Fragments) Length = 368 Score = 33.1 bits (74), Expect = 0.66 Identities = 20/44 (45%), Positives = 28/44 (63%) Frame = -3 Query: 307 SATPSSLVFAKPSTFTTTWSPIQNSPQQIELLAGDGGNVEDDCS 176 +A+ S+V+AKP TF +P QNS Q+I ++ GD G E D S Sbjct: 17 TASDGSVVWAKPYTFRAPPTPGQNSLQRI-IVFGDMGKAERDGS 59
>P69_MYCHR (P15362) Transport system permease protein p69| Length = 580 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -3 Query: 166 IRWTKSRNVLLLSNAQFVGVGLLVKSTRDFSLGFA 62 IRWT +++ A +G+GLL+ RDFSLG++ Sbjct: 216 IRWTT-----IINAAGVIGIGLLLNDARDFSLGWS 245
>RHA1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b| Length = 157 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Frame = +3 Query: 393 CRICQEE----DSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQYKPWVHS 560 C +C + D I+ L K C H C+ RW + ITC IC ++ P S Sbjct: 85 CTVCLSDFVSDDKIRQLPK---CGHVF---HHRCLDRWIVDCNKITCPICRNRFLPEEKS 138 Query: 561 T 563 T Sbjct: 139 T 139
>YM81_YEAST (Q04781) RING finger protein YMR247C| Length = 1562 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPC-TCNGSLKYAHRACVQRWCNEKGDITCEICHEQ 539 EC IC + + P TC H AC+ +W G+ TC +C + Sbjct: 1507 ECAICYSILHAVDRKLPSKTCPTCKNKFHGACLYKWFRSSGNNTCPLCRSE 1557
>RHA1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a| Length = 159 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Frame = +3 Query: 366 DEPLIPAAECRIC----QEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICH 533 D P P C +C + +D ++ L K C H C+ RW + + C +C Sbjct: 77 DLPTDPEDCCTVCLSDFESDDKVRQLPK---CGHVF---HHYCLDRWIVDYNKMKCPVCR 130 Query: 534 EQYKP 548 ++ P Sbjct: 131 HRFLP 135
>CRF1_YARLI (P45815) Copper resistance protein CRF1| Length = 411 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +3 Query: 381 PAAECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHEQYKPWVHS 560 PA +C C+E K L C C S C C G C H Q P +S Sbjct: 39 PATQCLHCREARKNKALHVKCKCGSSSSKHAATCP---CYSGGGCICTNKHPQVLP-PNS 94 Query: 561 TTT 569 TTT Sbjct: 95 TTT 97
>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)| Length = 1767 Score = 30.0 bits (66), Expect = 5.6 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPC-TCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 +C IC N P C K H AC+ +W TC +C E + Sbjct: 1715 DCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1766
>IE0_NPVAC (P41710) Immediate-early protein IE-0 (Immediate early 0 protein)| (Immediate early transactivator 0) Length = 261 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPCTCNGSLKYA--HRACVQRWCNEKGDITCEICHEQYK 545 EC +C+E + + KP C +YA + CV W C C YK Sbjct: 211 ECNVCKEISTDERFLKPKEC---CEYAICNACCVNMWKTATTHAKCPACRTSYK 261
>ZN294_HUMAN (O94822) Zinc finger protein 294| Length = 1766 Score = 30.0 bits (66), Expect = 5.6 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPC-TCNGSLKYAHRACVQRWCNEKGDITCEICHEQY 542 +C IC N P C K H AC+ +W TC +C E + Sbjct: 1714 DCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765
>NHR19_CAEEL (Q09528) Nuclear hormone receptor family member nhr-19| Length = 477 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Frame = +3 Query: 258 VVNVDGLANTKDDGVAEKPSEAVLVAAVDMVEDG-GEDEPLIPAAECR------ICQEED 416 V++V +A + KP + V+ + E G+ ++ C+ + Q +D Sbjct: 54 VISVPSIAAIAPQMPSVKPEKGVIGQCLICGEPSTGKHYGIVACLGCKTFFRRAVVQRQD 113 Query: 417 SIKNLEKPCTCNGSLKYAHRACVQRWCNEKG 509 + EKPC + A RAC R C E G Sbjct: 114 TECKREKPCDVTTMARKACRACRYRKCLESG 144
>IE0_NPVOP (O10369) Immediate-early protein IE-0 (Immediate early 0 protein)| (Immediate early transactivator 0) Length = 245 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Frame = +3 Query: 381 PAAECRICQEEDSIKNLEKPC-TCNGSLKYAHRACVQRWCNEKGDITCEICHEQYK 545 P EC +C+E + KP C SL YA CV W C C +K Sbjct: 191 PLYECDLCKEASADPRFLKPKECCQYSLCYA--CCVALWKTASTHAKCPACSTSFK 244
>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)| Length = 305 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHE 536 EC +C+E+ +++ + CN + H +C+ W E D TC +C + Sbjct: 228 ECPVCKEDYTVEEKVRQLPCN---HFFHSSCIVPWL-ELHD-TCPVCRK 271
>PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)| (Pex10p) (PER8) Length = 381 Score = 29.3 bits (64), Expect = 9.5 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 477 ACVQRWCNEKGDITCEICHEQYKPWVHSTTTC 572 +C+ WCNEK + C +C P HS+ C Sbjct: 349 SCIMEWCNEKQE--CPLCR---TPNTHSSLVC 375
>MC5R_SHEEP (P41983) Melanocortin receptor 5 (MC5-R)| Length = 325 Score = 29.3 bits (64), Expect = 9.5 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = -3 Query: 595 LCWSHLVEHVVVL--CTQGLYCSWQISH 518 +CW+ H++++ C Q LYCS +SH Sbjct: 249 ICWAPFFLHLILMISCPQNLYCSCFMSH 276
>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein| 115) Length = 304 Score = 29.3 bits (64), Expect = 9.5 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +3 Query: 390 ECRICQEEDSIKNLEKPCTCNGSLKYAHRACVQRWCNEKGDITCEICHE 536 EC +C+E+ +++ + CN + H +C+ W E D TC +C + Sbjct: 227 ECPVCKEDYTVEEEVRQLPCN---HFFHSSCIVPWL-ELHD-TCPVCRK 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,172,875 Number of Sequences: 219361 Number of extensions: 1845314 Number of successful extensions: 6991 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 6633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6987 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
