ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3j10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA3_YEAST (P32494) Transcriptional adapter 3 (NGG1 protein) 29 3.9
2GHRL_ANGJA (Q8JFY4) Ghrelin precursor (Ghrelin-21) 29 5.2
3ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disint... 28 8.8
4THIO_RHIET (O34292) Putative thiamine biosynthesis oxidoreductas... 28 8.8
5ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote... 28 8.8

>ADA3_YEAST (P32494) Transcriptional adapter 3 (NGG1 protein)|
          Length = 702

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 396 HRPESLTSDRPPETPGTKTPAYSHPGGTNQTLPQRERIIGLHNEQGLET 250
           ++ + +  D+    P  K P        +QTLP+    +GL NE+GLE+
Sbjct: 205 NKKQKIDVDKMENDPTVKNPKSEFV--VSQTLPRAAAALGLFNEEGLES 251



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>GHRL_ANGJA (Q8JFY4) Ghrelin precursor (Ghrelin-21)|
          Length = 111

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 185 MGRRDADGILDILRRP 232
           +GRRD+DGILD+  RP
Sbjct: 47  VGRRDSDGILDLFMRP 62



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>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 12) (ADAM-TS
            12) (ADAM-TS12)
          Length = 1593

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 393  RPESLTSDRPPETPGTKTPAYSHPGGT 313
            RP  LT+   PE+  T TPA S P  T
Sbjct: 1027 RPRMLTTPTGPESMSTSTPAISSPSPT 1053



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>THIO_RHIET (O34292) Putative thiamine biosynthesis oxidoreductase thiO|
          Length = 327

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 124 LGANWWRGASPSRSHRTGT 68
           L A+WW  A P   HR GT
Sbjct: 66  LAADWWEAALPGHVHRRGT 84



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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 375 SDRPPETPGTKTPAYSHPGGTNQTLPQ 295
           S  PP+ PG+++ + SHP  +   +PQ
Sbjct: 749 SQMPPQPPGSQSESSSHPALSQSPMPQ 775


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,998,373
Number of Sequences: 219361
Number of extensions: 1071532
Number of successful extensions: 2554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2554
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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