ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3j10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009075.1| Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence Length = 1777 Score = 609 bits (307), Expect = e-171 Identities = 396/422 (93%), Gaps = 9/422 (2%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 1236 gagatgcagcagctcgacttcagcgaggcgccatgggacgaggcagcctgcttcgccctc 1295 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcaccca 123 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1296 accaagtacccgtcgtacgagatcgactgggactcgcttctcgccaccaattagcaccca 1355 Query: 124 gttcatcttcgtcagctactactaccagtaccgtcttttagcgtgtcatgatgctaggtt 183 ||| | |||||||||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct: 1356 gtttgtgttcgtcagctactactac---taccgtcttt-agcgtttcatgatgctaggtt 1411 Query: 184 aatgggtcgccgcgatgcagatggcattttagacattctgcgccggcctttagcggatta 243 ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct: 1412 aatgggtcgccgcgatgcagatggcattttagacattctgcacgggcttttagcggatta 1471 Query: 244 gctctaagtctctaatccttgttcattgtgtagacctatgattcgttctctttgt-ggta 302 |||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||| Sbjct: 1472 gctctaagtctctaatccttgttcattgtgtagatctattatttgttctctttgtgggta 1531 Query: 303 gggtttggttagtccctcccggatgactataagccggcgtttttgtgcccggcgtctccg 362 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 gggtttggttagtccgtcccggatgactataagccggcgtttttgtgcccggcgtctccg 1591 Query: 363 gtggtcggtcactggtcagtgactccggccggtgaagtc----tgtccattgttctagct 418 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 1592 gtggtcggtcactggtcagtgactccggccggtgaagtctctgtgtccatggttctagct 1651 Query: 419 ag 420 || Sbjct: 1652 ag 1653
>gb|BT008937.1| Triticum aestivum clone wdi1c.pk004.g19:fis, full insert mRNA sequence Length = 1771 Score = 561 bits (283), Expect = e-157 Identities = 388/420 (92%), Gaps = 11/420 (2%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| Sbjct: 1182 gagatgcagcagctcgacttcagcgaggcgccatgggatgaggcagcctgcttcgccctc 1241 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcaccca 123 |||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| Sbjct: 1242 accaagtacccgtcgtacgagatcgactgggactcgcttctcgccgccaattagcaccca 1301 Query: 124 gttcatcttcgtcagctactactaccagtaccgtcttttagcgtgtcatgatgctaggtt 183 ||| | |||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 1302 gtttgtgttcgtcagctactactact------gtcttt-agcgtgtcatgatgttaggtt 1354 Query: 184 aatgggtcgccgcgatgcagatggcattttagacattctgcgccggcctttagcggatta 243 ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct: 1355 aatgggtcgccgcgatgcagatggcattttagacattctgcacgggcttttagcggatta 1414 Query: 244 gctctaagtctctaatccttgttcattgtgtagacctatgattcgttctctttgtggtag 303 |||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||| Sbjct: 1415 gctctaagtctctaatccttgttcattgtgtagatctattatttgttctc-ttgtggtag 1473 Query: 304 ggtttggttagtccctcccggatgactataagccggcgtttttgtgcccggcgtctccgg 363 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 ggtttggttagtccgtcccggatgactataagccggcgtttttgtgcccggcgtctccgg 1533 Query: 364 tggtcggtcactggtcagtgactccggccggtgaagtc---tgtccattgttctagctag 420 |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct: 1534 tggtcggtcactggtcagtgactccggccggttaagtcttgtgtccatggttctagctag 1593
>gb|BT009243.1| Triticum aestivum clone wlk1.pk0014.f4:fis, full insert mRNA sequence Length = 1261 Score = 553 bits (279), Expect = e-154 Identities = 387/420 (92%), Gaps = 11/420 (2%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| Sbjct: 726 gagatgcagcagctcgacttcagcgaggcgccatgggatgaggcagcctgcttcgccctc 785 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcaccca 123 |||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| Sbjct: 786 accaagtacccgtcgtacgagatcgactgggactcgcttctcgccgccaattagcaccca 845 Query: 124 gttcatcttcgtcagctactactaccagtaccgtcttttagcgtgtcatgatgctaggtt 183 ||| | |||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 846 gtttgtgttcgtcagctactactact------gtcttt-agcgtgtcatgatgttaggtt 898 Query: 184 aatgggtcgccgcgatgcagatggcattttagacattctgcgccggcctttagcggatta 243 ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct: 899 aatgggtcgccgcgatgcagatggcattttagacattctgcacgggcttttagcggatta 958 Query: 244 gctctaagtctctaatccttgttcattgtgtagacctatgattcgttctctttgtggtag 303 ||||||| |||||||||||||||||||||||||| |||| ||| |||||| ||||||||| Sbjct: 959 gctctaactctctaatccttgttcattgtgtagatctattatttgttctc-ttgtggtag 1017 Query: 304 ggtttggttagtccctcccggatgactataagccggcgtttttgtgcccggcgtctccgg 363 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1018 ggtttggttagtccgtcccggatgactataagccggcgtttttgtgcccggcgtctccgg 1077 Query: 364 tggtcggtcactggtcagtgactccggccggtgaagtc---tgtccattgttctagctag 420 |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct: 1078 tggtcggtcactggtcagtgactccggccggttaagtcttgtgtccatggttctagctag 1137
>gb|AY305028.1| Oryza sativa (japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds Length = 1403 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 1063 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 1122 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 1123 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 1180 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 1244 tgcagatgggattttagacattctgc 1269
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 12163975 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 12164034 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 12164035 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 12164092 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/64 (87%), Gaps = 4/64 (6%) Strand = Plus / Plus Query: 334 agccggcgtttttgtgcccggcgt----ctccggtggtcggtcactggtcagtgactccg 389 |||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct: 12164341 agccggcgtttttgtgtccggcgtgcgtctccggtggccggtcactggtcggttactccg 12164400 Query: 390 gccg 393 |||| Sbjct: 12164401 gccg 12164404 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 12164156 tgcagatgggattttagacattctgc 12164181
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 75434 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 75493 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 75494 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 75551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/64 (87%), Gaps = 4/64 (6%) Strand = Plus / Plus Query: 334 agccggcgtttttgtgcccggcgt----ctccggtggtcggtcactggtcagtgactccg 389 |||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct: 75800 agccggcgtttttgtgtccggcgtgcgtctccggtggccggtcactggtcggttactccg 75859 Query: 390 gccg 393 |||| Sbjct: 75860 gccg 75863 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 75615 tgcagatgggattttagacattctgc 75640
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 98354 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 98413 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 98414 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 98471 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/64 (87%), Gaps = 4/64 (6%) Strand = Plus / Plus Query: 334 agccggcgtttttgtgcccggcgt----ctccggtggtcggtcactggtcagtgactccg 389 |||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct: 98720 agccggcgtttttgtgtccggcgtgcgtctccggtggccggtcactggtcggttactccg 98779 Query: 390 gccg 393 |||| Sbjct: 98780 gccg 98783 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 98535 tgcagatgggattttagacattctgc 98560
>dbj|AK061033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H09, full insert sequence Length = 1019 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 442 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 501 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 502 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 559 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/64 (87%), Gaps = 4/64 (6%) Strand = Plus / Plus Query: 334 agccggcgtttttgtgcccggcgt----ctccggtggtcggtcactggtcagtgactccg 389 |||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct: 808 agccggcgtttttgtgtccggcgtgcgtctccggtggccggtcactggtcggttactccg 867 Query: 390 gccg 393 |||| Sbjct: 868 gccg 871 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 623 tgcagatgggattttagacattctgc 648
>dbj|AK058899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A04, full insert sequence Length = 902 Score = 170 bits (86), Expect = 2e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 294 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 353 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 121 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 354 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 411 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/64 (87%), Gaps = 4/64 (6%) Strand = Plus / Plus Query: 334 agccggcgtttttgtgcccggcgt----ctccggtggtcggtcactggtcagtgactccg 389 |||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct: 660 agccggcgtttttgtgtccggcgtgcgtctccggtggccggtcactggtcggttactccg 719 Query: 390 gccg 393 |||| Sbjct: 720 gccg 723 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 tgcagatggcattttagacattctgc 224 ||||||||| |||||||||||||||| Sbjct: 475 tgcagatgggattttagacattctgc 500
>ref|XM_450677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 168 bits (85), Expect = 9e-39 Identities = 106/113 (93%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| Sbjct: 763 gagatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctc 822 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgccaccaatta 116 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 823 accaagtacccgtcctacgagatcgactgggactccctcctcgccgccaatta 875
>gb|BT023988.1| Zea mays clone EL01N0413B03 mRNA sequence Length = 1494 Score = 147 bits (74), Expect = 3e-32 Identities = 98/106 (92%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||| Sbjct: 773 gagatgcagcagctggacttcagcgaggcgccgtgggacgaggccgccggcttcgcgctc 832 Query: 64 accaagtacccgtcctatgagatcgactgggactcgctcctcgcca 109 |||||||||||||| || ||||||||||||||||| |||||||||| Sbjct: 833 accaagtacccgtcgtacgagatcgactgggactccctcctcgcca 878
>ref|XM_507229.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453D01.40 mRNA Length = 1657 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 1223 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 1282 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 1283 accaagtacccgtcgtacgagatcgactgggactcgct 1320
>ref|XM_482344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1652 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 1225 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 1284 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 1285 accaagtacccgtcgtacgagatcgactgggactcgct 1322
>gb|AY297448.1| Oryza sativa (japonica cultivar-group) AP2-domain DRE binding factor DBF1 mRNA, complete cds Length = 926 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 795 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 854 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 855 accaagtacccgtcgtacgagatcgactgggactcgct 892
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 19541310 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 19541369 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 19541370 accaagtacccgtcgtacgagatcgactgggactcgct 19541407
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 16870 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 16929 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 16930 accaagtacccgtcgtacgagatcgactgggactcgct 16967
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 136067 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 136126 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 136127 accaagtacccgtcgtacgagatcgactgggactcgct 136164
>dbj|AK105725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G08, full insert sequence Length = 1652 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 1225 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 1284 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 1285 accaagtacccgtcgtacgagatcgactgggactcgct 1322
>dbj|AK068312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151K12, full insert sequence Length = 1657 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctc 63 |||||| ||||||| ||||||||||||| || ||||||||||| | || ||||| ||| Sbjct: 1222 gagatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctc 1281 Query: 64 accaagtacccgtcctatgagatcgactgggactcgct 101 |||||||||||||| || |||||||||||||||||||| Sbjct: 1282 accaagtacccgtcgtacgagatcgactgggactcgct 1319
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 2e-05 Identities = 66/77 (85%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 14 agctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacc 73 ||||| |||||||||||||||| |||| |||| | || | ||||||| | | |||||||| Sbjct: 17214914 agctccacttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacc 17214972 Query: 74 cgtcctatgagatcgac 90 ||||||| ||||||||| Sbjct: 17214973 cgtcctacgagatcgac 17214989 Score = 44.1 bits (22), Expect = 0.36 Identities = 37/42 (88%) Strand = Plus / Minus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgag 45 |||||||||| |||||||||| ||||| |||||||||||| Sbjct: 4762346 gagatgcagctgctcgacttctcggaggcgccatgggacgag 4762305
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 58.0 bits (29), Expect = 2e-05 Identities = 66/77 (85%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 14 agctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacc 73 ||||| |||||||||||||||| |||| |||| | || | ||||||| | | |||||||| Sbjct: 47658 agctccacttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacc 47716 Query: 74 cgtcctatgagatcgac 90 ||||||| ||||||||| Sbjct: 47717 cgtcctacgagatcgac 47733
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 58.0 bits (29), Expect = 2e-05 Identities = 66/77 (85%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 14 agctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacc 73 ||||| |||||||||||||||| |||| |||| | || | ||||||| | | |||||||| Sbjct: 106307 agctccacttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacc 106365 Query: 74 cgtcctatgagatcgac 90 ||||||| ||||||||| Sbjct: 106366 cgtcctacgagatcgac 106382
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 2e-05 Identities = 66/77 (85%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 14 agctcgacttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacc 73 ||||| |||||||||||||||| |||| |||| | || | ||||||| | | |||||||| Sbjct: 17208483 agctccacttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacc 17208541 Query: 74 cgtcctatgagatcgac 90 ||||||| ||||||||| Sbjct: 17208542 cgtcctacgagatcgac 17208558 Score = 44.1 bits (22), Expect = 0.36 Identities = 37/42 (88%) Strand = Plus / Minus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgag 45 |||||||||| |||||||||| ||||| |||||||||||| Sbjct: 4762461 gagatgcagctgctcgacttctcggaggcgccatgggacgag 4762420
>gb|AY823556.1| Pennisetum glaucum DRE binding factor mRNA, partial cds Length = 489 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactcgctcctcgcca 109 ||||||||||||||| ||||||||||||||| | || ||||||| Sbjct: 186 caagtacccgtcctacgagatcgactgggacgccctgctcgcca 229
>gb|BT018732.1| Zea mays clone EL01N0519G04.d mRNA sequence Length = 1550 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactcgct 101 ||||||||||||||| ||||||||||||||| |||| Sbjct: 1226 caagtacccgtcctacgagatcgactgggacgcgct 1261 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gccggcgtttttgtgcccggcgtc 358 ||||||||||||||| |||||||| Sbjct: 1416 gccggcgtttttgtgaccggcgtc 1439
>gb|AF493800.1| Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds Length = 1042 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactcgct 101 ||||||||||||||| ||||||||||||||| |||| Sbjct: 720 caagtacccgtcctacgagatcgactgggacgcgct 755 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gccggcgtttttgtgcccggcgtc 358 ||||||||||||||| |||||||| Sbjct: 910 gccggcgtttttgtgaccggcgtc 933
>ref|NM_196118.1| Oryza sativa (japonica cultivar-group) putative AP2-domain transcriptional regulator (OJ1208D02.13), mRNA Length = 966 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 10 cagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgc 59 |||||||| ||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 865 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 914
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 10 cagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgc 59 |||||||| ||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 24747 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 24796
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 10 cagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgc 59 |||||||| ||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 84879 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 84928
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 10 cagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgc 59 |||||||| ||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 11216759 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 11216808
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 10 cagcagctcgacttcagcgaggcaccatgggacgaggcagccggcttcgc 59 |||||||| ||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 11223199 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 11223248
>ref|XM_467836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1393 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 1007 caagtacccgtcctgggagatcgactgggactc 1039
>ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1288_G09.10 mRNA Length = 1654 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 1249 caagtacccgtcctgggagatcgactgggactc 1281
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 31668495 caagtacccgtcctgggagatcgactgggactc 31668527
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 48282 caagtacccgtcctgggagatcgactgggactc 48314
>dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H01, full insert sequence Length = 1393 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 1007 caagtacccgtcctgggagatcgactgggactc 1039
>dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full insert sequence Length = 1654 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactgggactc 98 |||||||||||||| ||||||||||||||||| Sbjct: 1249 caagtacccgtcctgggagatcgactgggactc 1281
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 44.1 bits (22), Expect = 0.36 Identities = 37/42 (88%) Strand = Plus / Plus Query: 4 gagatgcagcagctcgacttcagcgaggcaccatgggacgag 45 |||||||||| |||||||||| ||||| |||||||||||| Sbjct: 73109 gagatgcagctgctcgacttctcggaggcgccatgggacgag 73150
>gb|AY104042.1| Zea mays PCO094376 mRNA sequence Length = 918 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 66 caagtacccgtcctatgagatcgactggga 95 |||||||||||||| |||||||||||||| Sbjct: 489 caagtacccgtcctgggagatcgactggga 518
>emb|AJ007744.1|TSE007744 Thauera selenatis serA, serB, serD and serC genes Length = 8213 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gccggcttcgccctcaccaag 69 ||||||||||||||||||||| Sbjct: 8148 gccggcttcgccctcaccaag 8168
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 gttctctttgtggtagggtttggtt 312 ||||||||||| ||||||||||||| Sbjct: 23950690 gttctctttgttgtagggtttggtt 23950666
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ctactactaccagtaccgtct 159 ||||||||||||||||||||| Sbjct: 2353859 ctactactaccagtaccgtct 2353879
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 gttctctttgtggtagggtttggtt 312 ||||||||||| ||||||||||||| Sbjct: 97094 gttctctttgttgtagggtttggtt 97070
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 gttctctttgtggtagggtttggtt 312 ||||||||||| ||||||||||||| Sbjct: 65212 gttctctttgttgtagggtttggtt 65188
>emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chromosome 9 Contains part of the ASTN2 gene for astrotactin2 (KIAA0634), complete sequence Length = 159836 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 taagtctctaatccttgttcattg 271 ||||||| |||||||||||||||| Sbjct: 2734 taagtctttaatccttgttcattg 2711
>emb|BX004886.8| Zebrafish DNA sequence from clone DKEY-33P4 in linkage group 10, complete sequence Length = 125715 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 atggcattttagacattctg 223 |||||||||||||||||||| Sbjct: 15777 atggcattttagacattctg 15758
>gb|AC159004.5| Mus musculus BAC clone RP23-168H21 from chromosome 15, complete sequence Length = 217298 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 atgcagatggcattttagac 217 |||||||||||||||||||| Sbjct: 81859 atgcagatggcattttagac 81878
>emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 in linkage group 10, complete sequence Length = 247227 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 atggcattttagacattctg 223 |||||||||||||||||||| Sbjct: 213624 atggcattttagacattctg 213605
>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence Length = 171089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gatgcagatggcattttaga 216 |||||||||||||||||||| Sbjct: 52803 gatgcagatggcattttaga 52822
>emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 in linkage group 10, complete sequence Length = 184574 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 atggcattttagacattctg 223 |||||||||||||||||||| Sbjct: 180009 atggcattttagacattctg 180028 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,259,965 Number of Sequences: 3902068 Number of extensions: 2259965 Number of successful extensions: 39428 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39127 Number of HSP's gapped (non-prelim): 285 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
