>M030_ARATH (P93276) Hypothetical mitochondrial protein AtMg00030 (ORF107a)|
          Length = 107

 Score = 72.8 bits (177), Expect(2) = 1e-20
 Identities = 33/39 (84%), Positives = 33/39 (84%)
 Frame = -3

Query: 159 MFQFAKFEKSKERRLATELGYGFPIGDPWITDSYLPMAF 43
           MFQFAKF KSKERRLATELGYGFPIGDPWITD   P  F
Sbjct: 1   MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPF 39



 Score = 45.4 bits (106), Expect(2) = 1e-20
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -1

Query: 59 ISPWPFASESVLPSQCPGI 3
          ISPWPFASESVLPSQCPGI
Sbjct: 34 ISPWPFASESVLPSQCPGI 52

>KPPR_XANFL (P23015) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)|
           (PRKase) (PRK)
          Length = 291

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 178 PSFSYSDVSVR*V*KVQRAQTSHGAWIRFPDRRSMDHRFISPHGLS-PLKASFLLNA 11
           P F+ +D++ + V  V  +      WI  PD   +  RF  PHG+  P   S + N+
Sbjct: 197 PQFTETDINFQRVPTVDTSNPFVARWIPTPDESMVVIRFRDPHGIDFPYLLSMIHNS 253

>IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 430 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 335
           E Q T RP P SV C L   PK    F QLR+
Sbjct: 398 ETQITPRPPPESVSCIL-QEPKRNLSFFQLRK 428

>NT5_HUMAN (P34130) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)|
           (Neurotrophin-4) (NT-4) (Neutrophic factor 4)
          Length = 210

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +1

Query: 1   GMPGH*EGRTLSE---AKGHGEI*ICDP---WISDRETVSKLRG 114
           G P +   R +SE   A   GE+ +CD    W++DR T   LRG
Sbjct: 72  GAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRG 115

>NT5_RAT (P34131) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)|
           (Neurotrophin-4) (NT-4) (Neutrophic factor 4)
          Length = 209

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +1

Query: 1   GMPGH*EGRTLSE---AKGHGEI*ICDP---WISDRETVSKLRG 114
           G P +   R +SE   A   GE+ +CD    W++DR T   LRG
Sbjct: 71  GAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRG 114

>NT5_MOUSE (Q80VU4) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)|
          Length = 209

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +1

Query: 1   GMPGH*EGRTLSE---AKGHGEI*ICDP---WISDRETVSKLRG 114
           G P +   R +SE   A   GE+ +CD    W++DR T   LRG
Sbjct: 71  GAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRG 114

>IKKB_RAT (Q9QY78) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.1) (I-kappa-B-kinase beta) (IkBKB) (IKK-beta)
           (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear factor
           NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 430 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 335
           E Q T RP P SV C L   PK    F Q+R+
Sbjct: 398 ETQITPRPQPESVSCVL-QEPKRNLSFFQMRK 428

>CED4_CAEEL (P30429) Cell death protein 4|
          Length = 571

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 376 LRPKTVADFVQLRRARYGNFSNYACC 299
           +RP+    F+QL +  Y +  N+ACC
Sbjct: 546 IRPEDFPKFMQLHQKFYDSLKNFACC 571


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,806,859
Number of Sequences: 219361
Number of extensions: 1175962
Number of successful extensions: 2905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2902
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)