ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3i22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191150.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 506 ccgtgggtgagaggaagaaaggctgctgtcccccacc 542 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 413 ccgtgagtgagaggaagaaaggatgctgccccccacc 449 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 120 ctcctggatctcatcccagacgagaaagaatggagcctgagag 162 ||||| |||||||||||||| ||||| ||||||| ||||||| Sbjct: 43 ctcctagatctcatcccagatgagaaggaatggaagctgagag 85 Score = 42.1 bits (21), Expect = 2.1 Identities = 47/55 (85%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 435 cagaagcagcaggcgagagcagcagcgtgtgggaaggaactggcagcggaggaaa 489 |||||||||||||| || |||| | |||||||||||||| |||| |||||||| Sbjct: 352 cagaagcagcaggcaagggcagga---tgtgggaaggaacttgcagtggaggaaa 403
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 506 ccgtgggtgagaggaagaaaggctgctgtcccccacc 542 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 30970418 ccgtgagtgagaggaagaaaggatgctgccccccacc 30970454 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 120 ctcctggatctcatcccagacgagaaagaatggagcctgagag 162 ||||| |||||||||||||| ||||| ||||||| ||||||| Sbjct: 30969921 ctcctagatctcatcccagatgagaaggaatggaagctgagag 30969963 Score = 42.1 bits (21), Expect = 2.1 Identities = 47/55 (85%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 435 cagaagcagcaggcgagagcagcagcgtgtgggaaggaactggcagcggaggaaa 489 |||||||||||||| || |||| | |||||||||||||| |||| |||||||| Sbjct: 30970357 cagaagcagcaggcaagggcagga---tgtgggaaggaacttgcagtggaggaaa 30970408
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 506 ccgtgggtgagaggaagaaaggctgctgtcccccacc 542 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 27397 ccgtgagtgagaggaagaaaggatgctgccccccacc 27433 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 120 ctcctggatctcatcccagacgagaaagaatggagcctgagag 162 ||||| |||||||||||||| ||||| ||||||| ||||||| Sbjct: 26900 ctcctagatctcatcccagatgagaaggaatggaagctgagag 26942 Score = 42.1 bits (21), Expect = 2.1 Identities = 47/55 (85%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 435 cagaagcagcaggcgagagcagcagcgtgtgggaaggaactggcagcggaggaaa 489 |||||||||||||| || |||| | |||||||||||||| |||| |||||||| Sbjct: 27336 cagaagcagcaggcaagggcagga---tgtgggaaggaacttgcagtggaggaaa 27387
>dbj|AK068600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154A18, full insert sequence Length = 2214 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 506 ccgtgggtgagaggaagaaaggctgctgtcccccacc 542 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 1270 ccgtgagtgagaggaagaaaggatgctgccccccacc 1306 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 120 ctcctggatctcatcccagacgagaaagaatggagcctgagag 162 ||||| |||||||||||||| ||||| ||||||| ||||||| Sbjct: 900 ctcctagatctcatcccagatgagaaggaatggaagctgagag 942 Score = 42.1 bits (21), Expect = 2.1 Identities = 47/55 (85%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 435 cagaagcagcaggcgagagcagcagcgtgtgggaaggaactggcagcggaggaaa 489 |||||||||||||| || |||| | |||||||||||||| |||| |||||||| Sbjct: 1209 cagaagcagcaggcaagggcagga---tgtgggaaggaacttgcagtggaggaaa 1260
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 511 ggtgagaggaagaaaggctgctgtcccccacc 542 ||||||||||||||||| ||||||||| |||| Sbjct: 88670 ggtgagaggaagaaaggatgctgtccctcacc 88639
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 511 ggtgagaggaagaaaggctgctgtcccccacc 542 ||||||||||||||||| ||||||||| |||| Sbjct: 25847138 ggtgagaggaagaaaggatgctgtccctcacc 25847107 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 agggttcgggagcgacgagg 216 |||||||||||||||||||| Sbjct: 16533880 agggttcgggagcgacgagg 16533861
>dbj|AK071192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087E13, full insert sequence Length = 1397 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 511 ggtgagaggaagaaaggctgctgtcccccacc 542 ||||||||||||||||| ||||||||| |||| Sbjct: 599 ggtgagaggaagaaaggatgctgtccctcacc 630
>gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome 14, complete sequence Length = 203649 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 cctctcccttgggtaccacccc 338 |||||||||||||||||||||| Sbjct: 60416 cctctcccttgggtaccacccc 60437
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 48635 agaaggagcagaagcagcaggc 48656
>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete sequence Length = 200350 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 cctctcccttgggtaccacccc 338 |||||||||||||||||||||| Sbjct: 49120 cctctcccttgggtaccacccc 49099
>ref|XM_991835.1| PREDICTED: Mus musculus coiled-coil domain containing 64 (Ccdc64), mRNA Length = 2557 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 2247 agaaggagcagaagcagcaggc 2226
>gb|BC049161.1| Mus musculus coiled-coil domain containing 64, mRNA (cDNA clone IMAGE:6396086) Length = 1725 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 1393 agaaggagcagaagcagcaggc 1372
>gb|BC064124.1| Mus musculus coiled-coil domain containing 64, mRNA (cDNA clone IMAGE:3825508) Length = 1642 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 1311 agaaggagcagaagcagcaggc 1290
>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence Length = 238599 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 212196 agaaggagcagaagcagcaggc 212217
>gb|BC024804.1| Mus musculus coiled-coil domain containing 64, mRNA (cDNA clone IMAGE:5361390), partial cds Length = 2972 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 2648 agaaggagcagaagcagcaggc 2627
>dbj|AK170295.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630042O09 product:unclassifiable, full insert sequence Length = 1568 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 1264 agaaggagcagaagcagcaggc 1243
>dbj|AK008818.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210403N09 product:unclassifiable, full insert sequence Length = 857 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 551 agaaggagcagaagcagcaggc 530
>gb|AC122433.5| Mus musculus BAC clone RP24-194G3 from chromosome 1, complete sequence Length = 170341 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcaggc 448 |||||||||||||||||||||| Sbjct: 40177 agaaggagcagaagcagcaggc 40156
>gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete sequence Length = 163517 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cgacgaggacgagaagctggagctcaagc 237 |||||||||||||||| ||||||| |||| Sbjct: 28493 cgacgaggacgagaaggtggagctgaagc 28521
>gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, complete sequence Length = 158568 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 418 aaggtcatgagaaggagcagaagca 442 ||||||| ||||||||||||||||| Sbjct: 18013 aaggtcaagagaaggagcagaagca 18037
>emb|AL451062.12| Human DNA sequence from clone RP11-184I16 on chromosome 1 Contains the 3' end of the JMJD2 gene for jumonji domain containing 2, two novel genes, the 5' end of the SIAT6 gene for sialyltransferase 6 (N-acetyllacosaminide alpha 2,3-sialyltransferase), a SMT3 suppressor of mif two 3 (yeast) family pseudogene and a CpG island, complete sequence Length = 141866 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 gaaggagcagaagcagcaggc 448 ||||||||||||||||||||| Sbjct: 10430 gaaggagcagaagcagcaggc 10410
>gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, complete sequence Length = 158559 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 418 aaggtcatgagaaggagcagaagca 442 ||||||| ||||||||||||||||| Sbjct: 140547 aaggtcaagagaaggagcagaagca 140523
>ref|NM_138097.2| Drosophila melanogaster CG3548-RA (CG3548), mRNA Length = 2201 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cgacgaggacgagaagctggagctcaagc 237 |||||||||||||||| ||||||| |||| Sbjct: 136 cgacgaggacgagaaggtggagctgaagc 164
>gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, complete sequence Length = 185755 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 gagaaggagcagaagcagcag 446 ||||||||||||||||||||| Sbjct: 20347 gagaaggagcagaagcagcag 20327
>gb|AC022539.13| Homo sapiens chromosome 10 clone RP11-456A18, complete sequence Length = 96512 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 418 aaggtcatgagaaggagcagaagca 442 ||||||| ||||||||||||||||| Sbjct: 54452 aaggtcaagagaaggagcagaagca 54476
>gb|AY050235.1| Drosophila melanogaster SD02086 full length cDNA Length = 2218 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cgacgaggacgagaagctggagctcaagc 237 |||||||||||||||| ||||||| |||| Sbjct: 136 cgacgaggacgagaaggtggagctgaagc 164
>gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, region 60D-60D, BAC clone BACR11C07, complete sequence Length = 171151 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cgacgaggacgagaagctggagctcaagc 237 |||||||||||||||| ||||||| |||| Sbjct: 135542 cgacgaggacgagaaggtggagctgaagc 135570
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 gacgaggacgagaagctggagctca 234 ||||||||||||| ||||||||||| Sbjct: 33830 gacgaggacgagatgctggagctca 33806
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete sequence Length = 310958 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cgacgaggacgagaagctggagctcaagc 237 |||||||||||||||| ||||||| |||| Sbjct: 223595 cgacgaggacgagaaggtggagctgaagc 223623
>gb|AC137849.11| Mus musculus chromosome 1, clone RP24-124J24, complete sequence Length = 178764 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 aagaaaggctgctgtccccc 539 |||||||||||||||||||| Sbjct: 102258 aagaaaggctgctgtccccc 102239
>ref|XM_516868.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC27085 (LOC460841), mRNA Length = 1575 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 493 cagcggccgcggcccgtgggtgagagga 520 |||| ||||||||| ||||||||||||| Sbjct: 313 cagccgccgcggccagtgggtgagagga 340
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 agggttcgggagcgacgagg 216 |||||||||||||||||||| Sbjct: 32619 agggttcgggagcgacgagg 32600
>gb|AY190953.1| Drosophila virilis clone DVIF01_19_E15 (D1419) genomic sequence Length = 43320 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 agcagcaggcgagagcagca 458 |||||||||||||||||||| Sbjct: 43069 agcagcaggcgagagcagca 43050
>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence Length = 145709 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 catgagaaggagcagaagcagcag 446 ||||||||| |||||||||||||| Sbjct: 26178 catgagaagcagcagaagcagcag 26155
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ctgctgctgcacctgcgcgc 580 |||||||||||||||||||| Sbjct: 3474743 ctgctgctgcacctgcgcgc 3474724
>ref|XM_814379.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504427.20) partial mRNA Length = 1269 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 agaaggagcagaagcagcag 446 |||||||||||||||||||| Sbjct: 1053 agaaggagcagaagcagcag 1034
>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains parts of four novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tggaaagagaagccatgcct 116 |||||||||||||||||||| Sbjct: 101356 tggaaagagaagccatgcct 101337
>gb|AY336971.1| Xenopus laevis protein phospatase 3 regulatory subunit B alpha isoform type 1 mRNA, complete cds Length = 861 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ccttccaggccttgtaaaag 261 |||||||||||||||||||| Sbjct: 860 ccttccaggccttgtaaaag 841
>emb|AL160291.31| Human DNA sequence from clone RP11-85G18 on chromosome 10 Contains the 5' end of the YME1L1 gene for YME1-like 1 (S. cerevisiae), the gene for a novel protein kinase domain containing protein (FLJ14813), the gene for endozepine-related protein precursor (DKFZp434A2417) (FLJ32907 KIAA1996), a novel pseudogene (KIAA0563, FLJ34306), the 5' end of a novel pseudogene (FLJ10376) and six CpG islands, complete sequence Length = 155962 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 agcaggcgagagcagcagcg 461 |||||||||||||||||||| Sbjct: 131476 agcaggcgagagcagcagcg 131457
>emb|AL162379.14| Human DNA sequence from clone RP11-426K7 on chromosome 13 Contains part of a novel gene, complete sequence Length = 109757 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tggaaagagaagccatgcct 116 |||||||||||||||||||| Sbjct: 10059 tggaaagagaagccatgcct 10040
>gb|AC096640.2| Homo sapiens chromosome 1 clone RP11-332J14, complete sequence Length = 167346 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gcctgagaggaggagcacct 173 |||||||||||||||||||| Sbjct: 27192 gcctgagaggaggagcacct 27173
>emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in linkage group 12, complete sequence Length = 155303 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agaagctggagctcaagctt 239 |||||||||||||||||||| Sbjct: 11846 agaagctggagctcaagctt 11865
>gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of the complete genome Length = 9704 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cttggccttccaggccttgt 256 |||||||||||||||||||| Sbjct: 6895 cttggccttccaggccttgt 6914
>gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, complete sequence Length = 128332 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ccaagagaggattcctggac 398 |||||||||||||||||||| Sbjct: 124989 ccaagagaggattcctggac 125008
>gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306, section 311 of 469 of the complete genome Length = 11242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ctgctgctgcacctgcgcgc 580 |||||||||||||||||||| Sbjct: 1533 ctgctgctgcacctgcgcgc 1514
>ref|NM_138148.2| Drosophila melanogaster CG3829-RA (CG3829), mRNA Length = 3245 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cagcaggcgagagcagcagc 460 |||||||||||||||||||| Sbjct: 2907 cagcaggcgagagcagcagc 2926
>dbj|AB206464.1| Petromyzon marinus POC gene for proopiocortin, complete cds Length = 4035 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 agcagaagcagcaggcgagagcag 456 |||||||||||||| ||||||||| Sbjct: 1622 agcagaagcagcagtcgagagcag 1599
>gb|AC008706.5| Homo sapiens chromosome 5 clone CTB-77M23, complete sequence Length = 164394 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ccaagagaggattcctggac 398 |||||||||||||||||||| Sbjct: 137177 ccaagagaggattcctggac 137158
>gb|AC096644.2| Homo sapiens chromosome 1 clone RP11-410C4, complete sequence Length = 151900 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gcctgagaggaggagcacct 173 |||||||||||||||||||| Sbjct: 119595 gcctgagaggaggagcacct 119576
>dbj|AK163691.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930025O22 product:hypothetical protein, full insert sequence Length = 1432 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 aagaaaggctgctgtccccc 539 |||||||||||||||||||| Sbjct: 1137 aagaaaggctgctgtccccc 1118
>gb|AY051539.1| Drosophila melanogaster GH19047 full length cDNA Length = 3162 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cagcaggcgagagcagcagc 460 |||||||||||||||||||| Sbjct: 2803 cagcaggcgagagcagcagc 2822
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cagcaggcgagagcagcagc 460 |||||||||||||||||||| Sbjct: 150440 cagcaggcgagagcagcagc 150459
>gb|AC104807.5| Homo sapiens BAC clone RP11-616I24 from 2, complete sequence Length = 64232 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 cctcctgctgctgcacctgc 576 |||||||||||||||||||| Sbjct: 37599 cctcctgctgctgcacctgc 37580
>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete sequence Length = 152221 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 atgagaaggagcagaagcagcagg 447 |||||||||||||| ||||||||| Sbjct: 33180 atgagaaggagcagcagcagcagg 33157
>gb|AC078795.19| Homo sapiens 3 BAC RP11-362K14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125445 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 493 cagcggccgcggcccgtgggtgagagga 520 |||| ||||||||| ||||||||||||| Sbjct: 88013 cagccgccgcggccagtgggtgagagga 88040
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 caaagcacaaggtcatgaga 429 |||||||||||||||||||| Sbjct: 2492683 caaagcacaaggtcatgaga 2492664
>dbj|D55628.1|FSADA Petromyzon marinus POC mRNA for proopiocortin, complete cds Length = 1025 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 agcagaagcagcaggcgagagcag 456 |||||||||||||| ||||||||| Sbjct: 80 agcagaagcagcagtcgagagcag 57
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205164 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 gtgggtgagaggaagaaagg 527 |||||||||||||||||||| Sbjct: 13796 gtgggtgagaggaagaaagg 13777
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cagcaggcgagagcagcagc 460 |||||||||||||||||||| Sbjct: 302744 cagcaggcgagagcagcagc 302763
>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete sequence Length = 173509 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 cctcctgctgctgcacctgc 576 |||||||||||||||||||| Sbjct: 97147 cctcctgctgctgcacctgc 97128
>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete sequence Length = 187946 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 cctcctgctgctgcacctgc 576 |||||||||||||||||||| Sbjct: 174742 cctcctgctgctgcacctgc 174723
>dbj|AB091785.1| Lemur catta AMELX gene for amelogenin, partial cds Length = 5684 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 gtgggtgagaggaagaaagg 527 |||||||||||||||||||| Sbjct: 2365 gtgggtgagaggaagaaagg 2346
>gb|U30886.1|PMU30886 Petromyzon marinus proopiomelanocortin precursor (POMC) mRNA, complete cds Length = 986 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 agcagaagcagcaggcgagagcag 456 |||||||||||||| ||||||||| Sbjct: 60 agcagaagcagcagtcgagagcag 37
>emb|AL591127.12| Mouse DNA sequence from clone RP23-370H21 on chromosome 2, complete sequence Length = 125816 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 cagcggccgcggcccgtggg 512 |||||||||||||||||||| Sbjct: 104029 cagcggccgcggcccgtggg 104048
>gb|AF029240.1|AF029240 Rattus norvegicus MHC class Ib RT1.S3 (RT1.S3) gene, complete cds Length = 4969 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cactccacggccaaccccac 364 |||||||||||||||||||| Sbjct: 2614 cactccacggccaaccccac 2595
>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence Length = 179231 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 gtgggtgagaggaagaaagg 527 |||||||||||||||||||| Sbjct: 50933 gtgggtgagaggaagaaagg 50952
>gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, complete sequence Length = 197109 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 tctcccttgggtaccacccc 338 |||||||||||||||||||| Sbjct: 93686 tctcccttgggtaccacccc 93667
>gb|AC165281.2| Mus musculus BAC clone RP24-502H6 from chromosome 13, complete sequence Length = 225816 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 atgagaaggagcagaagcagcagg 447 |||||||||||||| ||||||||| Sbjct: 214161 atgagaaggagcagcagcagcagg 214138
>emb|AL929136.5| Mouse DNA sequence from clone RP23-442B16 on chromosome 2, complete sequence Length = 112788 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ctgagaggaggagcacctgggcac 179 |||||| ||||||||||||||||| Sbjct: 51705 ctgagatgaggagcacctgggcac 51728 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,719,691 Number of Sequences: 3902068 Number of extensions: 5719691 Number of successful extensions: 119848 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119544 Number of HSP's gapped (non-prelim): 300 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
