ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3i21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106210.1| Zea mays PCO090267 mRNA sequence 387 e-104
2ref|XM_483740.1| Oryza sativa (japonica cultivar-group), mRNA 347 2e-92
3dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
4dbj|AK121358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
6dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
7ref|NM_130337.3| Arabidopsis thaliana unknown protein AT2G47690 ... 66 1e-07
8emb|BX821932.1|CNS0A7X6 Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
9gb|AY271664.1| Gossypium barbadense fiber protein Fb14 mRNA, com... 62 2e-06
10gb|DQ023531.1| Gossypium hirsutum cultivar CIM707 Fb14 mRNA, com... 60 8e-06
11ref|NM_116144.2| Arabidopsis thaliana unknown protein AT3G62790 ... 56 1e-04
12gb|AY114576.1| Arabidopsis thaliana putative protein (At3g62790)... 56 1e-04
13gb|AY062842.1| Arabidopsis thaliana putative protein (At3g62790;... 56 1e-04
14gb|AY088460.1| Arabidopsis thaliana clone 6853 mRNA, complete se... 56 1e-04
15emb|BX821178.1|CNS0A86O Arabidopsis thaliana Full-length cDNA Co... 50 0.007
16emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4,... 44 0.45
17gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 ma... 44 0.45
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
19emb|AL512547.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.45
20gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete... 42 1.8
21gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete... 42 1.8
22gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosom... 42 1.8
23gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80... 42 1.8
24gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, co... 42 1.8
25emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chro... 42 1.8
26gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.8
27gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.8
28ref|XM_474235.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
29gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.0
30ref|XM_875096.1| PREDICTED: Bos taurus similar to PR-domain zinc... 40 7.0
31ref|XM_875010.1| PREDICTED: Bos taurus similar to PR-domain zinc... 40 7.0
32ref|XM_612859.2| PREDICTED: Bos taurus similar to PR-domain zinc... 40 7.0
33ref|XM_447073.1| Candida glabrata CBS138, CAGL0H06391g partial mRNA 40 7.0
34gb|BC114275.1| Danio rerio similar to CDNA sequence BC019977, mR... 40 7.0
35emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chr... 40 7.0
36emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 40 7.0
37emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 40 7.0
38emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.0
39emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.0
40emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 40 7.0
41emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chr... 40 7.0
42ref|XM_688457.1| PREDICTED: Danio rerio similar to CDNA sequence... 40 7.0
43emb|BX640750.1|HSM806828 Homo sapiens mRNA; cDNA DKFZp686K10126 ... 40 7.0
44gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q2... 40 7.0
45dbj|AK068004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
46emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 7.0
47emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 7.0
48emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 ... 40 7.0
49gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromoso... 40 7.0
50dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 7.0
51gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer... 40 7.0
52gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 40 7.0
53gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 7.0
54dbj|AB045573.1| Danio rerio DNA, fkk-7a locus, insertion site of... 40 7.0
55dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.0
56dbj|AB082522.1| Homo sapiens mRNA for KIAA1991 protein 40 7.0 
>gb|AY106210.1| Zea mays PCO090267 mRNA sequence
          Length = 586

 Score =  387 bits (195), Expect = e-104
 Identities = 243/259 (93%)
 Strand = Plus / Plus

                                                                       
Query: 53  cgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctgg 112
           ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 120 cgatggcgtccggctggggcatcaacgggaacaagggccgctgctacgacttctggctgg 179

                                                                       
Query: 113 acttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgagg 172
           | ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agttcagcgagtgcatgagccgctgccgccagccctccgactgcggcctcctccgcgagg 239

                                                                       
Query: 173 actacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaagg 232
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 actatctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaagg 299

                                                                       
Query: 233 aggagcaacgtcagattagagctgctgctcgcaaggccaaagaggaagccgaaggagctc 292
           |||||||||||||||| |||||||||||||| |||||||| |||||||| || || || |
Sbjct: 300 aggagcaacgtcagatcagagctgctgctcgtaaggccaaggaggaagctgagggtgccc 359

                              
Query: 293 ctgctgttgcagctcacca 311
           ||||||||||||| |||||
Sbjct: 360 ctgctgttgcagcacacca 378
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>ref|XM_483740.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 545

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 153

                                                                       
Query: 112 gacttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgag 171
           |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 154 gacttcagcgagtgtatgagccgctgccgccagcccaccgactgcggcctcctccgggag 213

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 214 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacagaatctacaag 273

                                      
Query: 232 gaggagcaacgtcagattagagctgct 258
           |||||||||||| || | |||||||||
Sbjct: 274 gaggagcaacgtaagttaagagctgct 300



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 371 gctatgagcaaggcaataattccc 394
           |||| |||||||||||||||||||
Sbjct: 431 gctaagagcaaggcaataattccc 454
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>dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031D23, full
           insert sequence
          Length = 2052

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 147

                                                                       
Query: 112 gacttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgag 171
           |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 148 gacttcagcgagtgtatgagccgctgccgccagcccaccgactgcggcctcctccgggag 207

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 208 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacagaatctacaag 267

                                      
Query: 232 gaggagcaacgtcagattagagctgct 258
           |||||||||||| || | |||||||||
Sbjct: 268 gaggagcaacgtaagttaagagctgct 294
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>dbj|AK121358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D21, full
           insert sequence
          Length = 545

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 153

                                                                       
Query: 112 gacttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgag 171
           |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 154 gacttcagcgagtgtatgagccgctgccgccagcccaccgactgcggcctcctccgggag 213

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 214 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacagaatctacaag 273

                                      
Query: 232 gaggagcaacgtcagattagagctgct 258
           |||||||||||| || | |||||||||
Sbjct: 274 gaggagcaacgtaagttaagagctgct 300



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 371 gctatgagcaaggcaataattccc 394
           |||| |||||||||||||||||||
Sbjct: 431 gctaagagcaaggcaataattccc 454
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  272 bits (137), Expect = 1e-69
 Identities = 149/153 (97%)
 Strand = Plus / Plus

                                                                            
Query: 52       gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 111
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27849688 gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 27849747

                                                                            
Query: 112      gacttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgag 171
                |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 27849748 gacttcagcgagtgtatgagccgctgccgccagcccaccgactgcggcctcctccgggag 27849807

                                                 
Query: 172      gactacctcgagtgcctccaccactccaaggag 204
                |||||||||||||||||||||||||||||||||
Sbjct: 27849808 gactacctcgagtgcctccaccactccaaggag 27849840



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 203      agttccagcgcaggaacaggatctacaaggaggagcaacgtcagattagagctgct 258
                ||||||||||||||||||| ||||||||||||||||||||| || | |||||||||
Sbjct: 27850849 agttccagcgcaggaacagaatctacaaggaggagcaacgtaagttaagagctgct 27850904



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 371      gctatgagcaaggcaataattccc 394
                |||| |||||||||||||||||||
Sbjct: 27851035 gctaagagcaaggcaataattccc 27851058
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score =  272 bits (137), Expect = 1e-69
 Identities = 149/153 (97%)
 Strand = Plus / Plus

                                                                         
Query: 52    gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 111
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57766 gcgatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctg 57825

                                                                         
Query: 112   gacttcagctcgtgtatgagccgctgccgccagccctccgactgcggcctcctccgcgag 171
             |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 57826 gacttcagcgagtgtatgagccgctgccgccagcccaccgactgcggcctcctccgggag 57885

                                              
Query: 172   gactacctcgagtgcctccaccactccaaggag 204
             |||||||||||||||||||||||||||||||||
Sbjct: 57886 gactacctcgagtgcctccaccactccaaggag 57918



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 203   agttccagcgcaggaacaggatctacaaggaggagcaacgtcagattagagctgct 258
             ||||||||||||||||||| ||||||||||||||||||||| || | |||||||||
Sbjct: 58927 agttccagcgcaggaacagaatctacaaggaggagcaacgtaagttaagagctgct 58982



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   gctatgagcaaggcaataattccc 394
             |||| |||||||||||||||||||
Sbjct: 59113 gctaagagcaaggcaataattccc 59136
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>ref|NM_130337.3| Arabidopsis thaliana unknown protein AT2G47690 mRNA, complete cds
          Length = 589

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 175 tacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaaggag 234
           ||||||||||| |||||||| ||||| ||||| ||  | ||||||||||| |||||||||
Sbjct: 226 tacctcgagtgtctccaccattccaaagagtttcaaagaaggaacaggatatacaaggag 285

                
Query: 235 gagca 239
           |||||
Sbjct: 286 gagca 290
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>emb|BX821932.1|CNS0A7X6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL86ZA01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 506

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 175 tacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaaggag 234
           ||||||||||| |||||||| ||||| ||||| ||  | ||||||||||| |||||||||
Sbjct: 106 tacctcgagtgtctccaccattccaaagagtttcaaagaaggaacaggatatacaaggag 165

                
Query: 235 gagca 239
           |||||
Sbjct: 166 gagca 170
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>gb|AY271664.1| Gossypium barbadense fiber protein Fb14 mRNA, complete cds
          Length = 568

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 54  gatggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctgga 113
           |||||| ||||||||||| |||||||| ||||| ||  |||||||||| |||||| | ||
Sbjct: 45  gatggcatccgggtggggaatcaacggtaacaaaggcaggtgctacgatttctgggtcga 104

                  
Query: 114 cttcagc 120
           |||||||
Sbjct: 105 cttcagc 111
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>gb|DQ023531.1| Gossypium hirsutum cultivar CIM707 Fb14 mRNA, complete cds
          Length = 252

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggcgtccgggtggggcatcaacgggaacaaggggcggtgctacgacttctggctggac 114
           ||||| ||||||||||| |||||||| ||||| ||  |||||||||| |||||| | |||
Sbjct: 1   atggcatccgggtggggaatcaacggtaacaaaggcaggtgctacgatttctgggtcgac 60

                 
Query: 115 ttcagc 120
           ||||||
Sbjct: 61  ttcagc 66
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>ref|NM_116144.2| Arabidopsis thaliana unknown protein AT3G62790 mRNA, complete cds
          Length = 576

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||| || ||||| ||||| |||||||| || || |||||||| ||||| 
Sbjct: 205 gactacctcgagtgtcttcaccattccaaagagttccaacgaagaaacaggatatacaaa 264

                       
Query: 232 gaggagcaacgt 243
           || || ||||||
Sbjct: 265 gaagaacaacgt 276
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>gb|AY114576.1| Arabidopsis thaliana putative protein (At3g62790) mRNA, complete
           cds
          Length = 437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||| || ||||| ||||| |||||||| || || |||||||| ||||| 
Sbjct: 118 gactacctcgagtgtcttcaccattccaaagagttccaacgaagaaacaggatatacaaa 177

                       
Query: 232 gaggagcaacgt 243
           || || ||||||
Sbjct: 178 gaagaacaacgt 189
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>gb|AY062842.1| Arabidopsis thaliana putative protein (At3g62790; F26K9_220) mRNA,
           complete cds
          Length = 576

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||| || ||||| ||||| |||||||| || || |||||||| ||||| 
Sbjct: 205 gactacctcgagtgtcttcaccattccaaagagttccaacgaagaaacaggatatacaaa 264

                       
Query: 232 gaggagcaacgt 243
           || || ||||||
Sbjct: 265 gaagaacaacgt 276
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>gb|AY088460.1| Arabidopsis thaliana clone 6853 mRNA, complete sequence
          Length = 562

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 172 gactacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaag 231
           |||||||||||||| || ||||| ||||| |||||||| || || |||||||| ||||| 
Sbjct: 200 gactacctcgagtgtcttcaccattccaaagagttccaacgaagaaacaggatatacaaa 259

                       
Query: 232 gaggagcaacgt 243
           || || ||||||
Sbjct: 260 gaagaacaacgt 271
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>emb|BX821178.1|CNS0A86O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 583

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 175 tacctcgagtgcctccaccactccaaggagttccagcgcaggaacaggatctacaaggag 234
           ||||||||||| |||||||| || || ||||| ||  | |||||||| || |||||||||
Sbjct: 135 tacctcgagtgtctccaccattctaaagagtttcaaagaaggaacagtatatacaaggag 194

                
Query: 235 gagca 239
           |||||
Sbjct: 195 gagca 199
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>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete
             sequence
          Length = 131246

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 27    ggtcgacggcggagaagaagaagagg 52
             |||| |||||||||||||||||||||
Sbjct: 84904 ggtccacggcggagaagaagaagagg 84929
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>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
             sequence
          Length = 106355

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 214   aggaacaggatctacaaggaggagca 239
             ||||||||||| ||||||||||||||
Sbjct: 19396 aggaacaggatatacaaggaggagca 19421
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 27       ggtcgacggcggagaagaagaagagg 52
                |||| |||||||||||||||||||||
Sbjct: 23088574 ggtccacggcggagaagaagaagagg 23088599



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                                
Query: 30       cgacggcggagaagaaga-agaggcgatggcg 60
                ||||| |||||||||||| |||||||||||||
Sbjct: 33906274 cgacgtcggagaagaagagagaggcgatggcg 33906305
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>emb|AL512547.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0812A04, complete
            sequence
          Length = 43144

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 27   ggtcgacggcggagaagaagaagagg 52
            |||| |||||||||||||||||||||
Sbjct: 9508 ggtccacggcggagaagaagaagagg 9533
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>gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete sequence
          Length = 171888

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   tttttgatttttcttatgctt 342
             |||||||||||||||||||||
Sbjct: 87054 tttttgatttttcttatgctt 87034
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>gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete sequence
          Length = 174573

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 322  tttttgatttttcttatgctt 342
            |||||||||||||||||||||
Sbjct: 6610 tttttgatttttcttatgctt 6630
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>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete
             sequence
          Length = 181002

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 455   cctggtcatgaagtttgtgca 475
             |||||||||||||||||||||
Sbjct: 78613 cctggtcatgaagtttgtgca 78633
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>gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80 of 83 of the complete
             sequence
          Length = 323775

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   tttttgatttttcttatgctt 342
             |||||||||||||||||||||
Sbjct: 27550 tttttgatttttcttatgctt 27570
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>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence
          Length = 180605

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 455    cctggtcatgaagtttgtgca 475
              |||||||||||||||||||||
Sbjct: 131246 cctggtcatgaagtttgtgca 131266
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>emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chromosome X, complete
             sequence
          Length = 180106

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   ggaacaggatctacaaggagg 235
             |||||||||||||||||||||
Sbjct: 54453 ggaacaggatctacaaggagg 54473
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>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
            clone KBrH015H17, complete sequence
          Length = 110885

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 172  gactacctcgagtgcctccaccactccaa 200
            |||||||||||||| |||||||| |||||
Sbjct: 4520 gactacctcgagtgtctccaccattccaa 4492
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>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH001H24, complete sequence
          Length = 118144

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 172   gactacctcgagtgcctccaccactccaa 200
             |||||||||||||| |||||||| |||||
Sbjct: 90671 gactacctcgagtgtctccaccattccaa 90643
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>ref|XM_474235.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 30  cgacggcggagaagaaga-agaggcgatggcg 60
           ||||| |||||||||||| |||||||||||||
Sbjct: 247 cgacgtcggagaagaagagagaggcgatggcg 216
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      agaggctgccaaggtcgacg 34
               ||||||||||||||||||||
Sbjct: 4112013 agaggctgccaaggtcgacg 4111994
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>ref|XM_875096.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4,
            transcript variant 4 (LOC540731), mRNA
          Length = 4035

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gagagaagaaaaggagaggc 20
            ||||||||||||||||||||
Sbjct: 3302 gagagaagaaaaggagaggc 3321
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>ref|XM_875010.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4,
            transcript variant 3 (LOC540731), mRNA
          Length = 3889

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gagagaagaaaaggagaggc 20
            ||||||||||||||||||||
Sbjct: 3156 gagagaagaaaaggagaggc 3175
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>ref|XM_612859.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 4,
            transcript variant 1 (LOC540731), mRNA
          Length = 4063

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gagagaagaaaaggagaggc 20
            ||||||||||||||||||||
Sbjct: 3330 gagagaagaaaaggagaggc 3349
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>ref|XM_447073.1| Candida glabrata CBS138, CAGL0H06391g partial mRNA
          Length = 1980

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  cggcggagaagaagaagagg 52
           ||||||||||||||||||||
Sbjct: 115 cggcggagaagaagaagagg 134
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>gb|BC114275.1| Danio rerio similar to CDNA sequence BC019977, mRNA (cDNA clone
           IMAGE:7055214), partial cds
          Length = 1226

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aaggccaaagaggaagccga 284
           ||||||||||||||||||||
Sbjct: 233 aaggccaaagaggaagccga 252
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>emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chromosome 6 Contains part of
              the SUPT3H gene for suppressor of Ty 3 homolog (S.
              cerevisiae), a novel pseudogene and a pseudogene similar to
              part of poly(rC) binding protein 3 (PCBP3), complete
              sequence
          Length = 165454

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    aaaatcatgagtttggtaaa 450
              ||||||||||||||||||||
Sbjct: 134591 aaaatcatgagtttggtaaa 134610
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>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    atttttcttatgcttttgtt 347
              ||||||||||||||||||||
Sbjct: 162016 atttttcttatgcttttgtt 161997
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     cggcggagaagaagaagagg 52
              ||||||||||||||||||||
Sbjct: 629595 cggcggagaagaagaagagg 629614
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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agaggctgccaaggtcgacg 34
              ||||||||||||||||||||
Sbjct: 302581 agaggctgccaaggtcgacg 302562
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>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14
          Length = 316050

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agaggctgccaaggtcgacg 34
              ||||||||||||||||||||
Sbjct: 306104 agaggctgccaaggtcgacg 306085
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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
              complete sequence
          Length = 163448

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 30     cgacggcggagaagaaga-agaggcgatggcg 60
              ||||| |||||||||||| |||||||||||||
Sbjct: 118173 cgacgtcggagaagaagagagaggcgatggcg 118204
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>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a
             novel gene and a CpG island, complete sequence
          Length = 193243

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   ttgatttttcttatgctttt 344
             ||||||||||||||||||||
Sbjct: 14751 ttgatttttcttatgctttt 14770
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>ref|XM_688457.1| PREDICTED: Danio rerio similar to CDNA sequence BC019977 (LOC565172),
            mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  aaggccaaagaggaagccga 284
            ||||||||||||||||||||
Sbjct: 1807 aaggccaaagaggaagccga 1826
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>emb|BX640750.1|HSM806828 Homo sapiens mRNA; cDNA DKFZp686K10126 (from clone DKFZp686K10126)
          Length = 6744

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  aaaatcatgagtttggtaaa 450
            ||||||||||||||||||||
Sbjct: 2990 aaaatcatgagtttggtaaa 2971
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>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence
          Length = 128978

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   tgcttttgtttgctgcaagt 357
             ||||||||||||||||||||
Sbjct: 52663 tgcttttgtttgctgcaagt 52682
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>dbj|AK068004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129G21, full
           insert sequence
          Length = 2183

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 30  cgacggcggagaagaaga-agaggcgatggcg 60
           ||||| |||||||||||| |||||||||||||
Sbjct: 430 cgacgtcggagaagaagagagaggcgatggcg 399
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       agagaagaaaaggagaggct 21
               ||||||||||||||||||||
Sbjct: 1093971 agagaagaaaaggagaggct 1093990
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gacggcggagaagaagaaga 50
              ||||||||||||||||||||
Sbjct: 216542 gacggcggagaagaagaaga 216523
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>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16,
              complete sequence
          Length = 196875

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    aaggccaaagaggaagccga 284
              ||||||||||||||||||||
Sbjct: 100022 aaggccaaagaggaagccga 100003
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>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence
          Length = 179537

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    tttttcttatgcttttgttt 348
              ||||||||||||||||||||
Sbjct: 168031 tttttcttatgcttttgttt 168050
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>dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21, complete
             sequence
          Length = 118300

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   aaaatcatgagtttggtaaa 450
             ||||||||||||||||||||
Sbjct: 90207 aaaatcatgagtttggtaaa 90188
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>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208921

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    tggacttcagctcgtgtatgagcc 133
              ||||||||||||| ||||||||||
Sbjct: 112752 tggacttcagctcatgtatgagcc 112729
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>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    tggacttcagctcgtgtatgagcc 133
              ||||||||||||| ||||||||||
Sbjct: 192962 tggacttcagctcatgtatgagcc 192939
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   atttttcttatgcttttgtt 347
             ||||||||||||||||||||
Sbjct: 45485 atttttcttatgcttttgtt 45466
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>dbj|AB045573.1| Danio rerio DNA, fkk-7a locus, insertion site of the medaka fish
           Tol2 element
          Length = 703

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 aaggccaaagaggaagccga 284
           ||||||||||||||||||||
Sbjct: 670 aaggccaaagaggaagccga 651
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>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete
              sequences
          Length = 230157

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    aaaatcatgagtttggtaaa 450
              ||||||||||||||||||||
Sbjct: 217473 aaaatcatgagtttggtaaa 217454
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>dbj|AB082522.1| Homo sapiens mRNA for KIAA1991 protein
          Length = 7811

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  aaaatcatgagtttggtaaa 450
            ||||||||||||||||||||
Sbjct: 4086 aaaatcatgagtttggtaaa 4067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,122,936
Number of Sequences: 3902068
Number of extensions: 6122936
Number of successful extensions: 147208
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 146849
Number of HSP's gapped (non-prelim): 397
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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