>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 484 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 380
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 484 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 380
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 25  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>RBPSL_HUMAN (Q9UBG7) Recombining binding protein suppressor of hairless-like|
           protein (Transcription factor RBP-L)
          Length = 516

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 527 RSEITFPLPLLGSSARFHVLFHYPLGVLFTFPSRYYFAIGHPGV 396
           R+ IT P+ L+ +   F     YP    FT+   Y    GHPGV
Sbjct: 449 RAPITIPMSLVRADGLF-----YPSAFSFTYTPEYSVRPGHPGV 487

>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = -2

Query: 593 GGFRSLNQATAYESPAHSSTGTRSEITFPLPLLGSSARFHVLF------HYPLGVLFT-- 438
           G  +  N   AYE PA ++     E+T P P +G+  +F+ L       + P   +FT  
Sbjct: 602 GAKKGKNGGPAYEMPAFTA-----ELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCE 656

Query: 437 FPSRYYFA 414
            P  YYFA
Sbjct: 657 VPGVYYFA 664


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,044,996
Number of Sequences: 219361
Number of extensions: 1945162
Number of successful extensions: 4162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4160
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)