ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h24 |
|---|---|
| Clone Library Name | barley_pub |
>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)| Length = 460 Score = 34.7 bits (78), Expect = 0.10 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = +3 Query: 39 AESPA*RSHGDLAAEGPEXXXXXXXXXXGAVEHPADQRQQLDGALLLQ---HRRGARPLP 209 A +PA R HG A G + HPA + +D A++ ++R P+P Sbjct: 153 AANPAGRGHGGTAGAG-----RAGAALPAELAHPA--AECVDPAVVFPFPVNKRDPAPVP 205 Query: 210 LAP-GSPVAVLAVVGDVAPGSVHRAHLRPDRVQGQ 311 +AP GSP AV G AP S A P R+ G+ Sbjct: 206 VAPAGSPAVGAAVAGAAAPASA--AVAAPPRLGGR 238
>S6A17_RAT (P31662) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 291 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_MOUSE (Q8BJI1) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 291 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_HUMAN (Q9H1V8) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 291 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.8 bits (68), Expect = 1.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 267 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 30.8 bits (68), Expect = 1.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 267 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_RAT (Q08469) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 267 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>S6A15_MOUSE (Q8BG16) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 163 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 267 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>CASB_RABIT (P09116) Beta-casein precursor| Length = 228 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/42 (30%), Positives = 28/42 (66%) Frame = -1 Query: 354 QKLVNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELR 229 Q ++N L+++L P L+P++ E + ++T +P+H+ P L+ Sbjct: 85 QNILNLAQLDMLL-PLLQPEIMEDPKAKETIIPKHKLMPFLK 125
>VGLH_EHV4 (P24430) Glycoprotein H precursor| Length = 855 Score = 30.0 bits (66), Expect = 2.5 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +1 Query: 37 RQNHLHDVPTGTWLRRD-LNVIGFGLIGWLAPSSIPLINGNSLTGLFFSSIGEELAHFPS 213 +Q LH V GTW+ + NV + I + P+ N N + FF +I E + Sbjct: 33 QQTKLHYVGNGTWVHNNTFNVTRYDRI-----TMEPVYNNNLSSTTFFVAISERNFRTVN 87 Query: 214 PPALQSQFWL 243 P S FW+ Sbjct: 88 TPLGASVFWI 97
>CHIF_DROME (Q9NK54) Protein chiffon| Length = 1711 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 345 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLESR 217 VN L E + L+ D+ E +E+ Q PR +P P LR +S+ Sbjct: 356 VNRFLEEEPVESELDMDVDESLSNEELQSPRQRPSPALREKSK 398
>RBFAL_MOUSE (Q6P3B9) Putative ribosome-binding factor A, mitochondrial| precursor Length = 350 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 345 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQP 238 V+ LL E GP E D +G R+ QVP P+P Sbjct: 195 VDRLLAEADFGPPDERDDLDGLRNADAQVPHDSPEP 230
>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 (Hyperpolarization-activated cation channel 3) (HAC-3) Length = 779 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 168 ALLLQHRRGARPLPLAPGSPVAVLA 242 A+ L H+RG PLPL+P SP +LA Sbjct: 620 AIALTHQRG--PLPLSPDSPATLLA 642
>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 780 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 168 ALLLQHRRGARPLPLAPGSPVAVLA 242 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein| Length = 670 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 Query: 192 GARPLPLAPGSPVAVLAVVGDVAPGSVH 275 G RP P PG P + V PGSVH Sbjct: 97 GTRPRPTIPGVPTTIPNTDAPVDPGSVH 124
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 168 ALLLQHRRGARPLPLAPGSPVAVLA 242 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 28.9 bits (63), Expect = 5.7 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = +3 Query: 141 ADQRQQLDGALLLQHRRGARPLPLA--PG---SPVAVLAVVGDVAPGSVHRAHLRPDRVQ 305 A Q Q L G H GA P+ A PG +PV + A VG PGS+ A + +V Sbjct: 228 APQAQSLGG----MHVNGAPPMMQASMPGGVPAPVQMAAAVGGPGPGSLAPAGVMQAQVG 283 Query: 306 GQDRGLLP 329 Q G +P Sbjct: 284 MQGAGPVP 291
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 312 PALEPDLAEGERDEQTQVPRHQPQP 238 P LEP+ A+ E E+ +VP P+P Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521
>GLPB_HAEIN (P43800) Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC| 1.1.99.5) (Anaerobic G-3-P dehydrogenase subunit B) (Anaerobic G3Pdhase B) Length = 432 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 43 NHLHDVPTGTWLRRDLNVIGFGLI--GWLAPSSIPLINGN 156 N LH G+ + V G G + WL+P+S+P + GN Sbjct: 101 NELHLDLIGSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 279 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 172 +D PR Q + LES RGE+ +LAD EE Sbjct: 3474 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3509
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 28.1 bits (61), Expect = 9.7 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +3 Query: 123 GAVEHPADQ---RQQLDGALLLQHRRGARPLPLAPGSPVAVLAVVGDVAPGSVHRAHLRP 293 G++ PA + R+QLD LLL+ + L P P VL + PGS R P Sbjct: 3048 GSLSQPASRYSSREQLD--LLLRRQLSKERLEEVP-VPAPVLHPLS--RPGSQERLDTAP 3102 Query: 294 DRVQGQDRG 320 R++ +DRG Sbjct: 3103 ARLEARDRG 3111
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 279 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 172 +D PR Q + LES RGE+ +LAD EE Sbjct: 3470 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3505
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 279 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 172 +D PR Q + LES RGE+ +LAD EE Sbjct: 3481 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3516
>HEATR_ARATH (Q9C8Z4) Hypothetical protein At3g06530| Length = 1830 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 25/81 (30%) Frame = -2 Query: 254 VTNHSQNCDWRAGGEGKWASS-SPMLEKKSPVKL---------------------LPLIS 141 +T + +N D+R+ G WA ++ KK P +L L ++S Sbjct: 365 MTQYQKNSDFRSSTSGSWAKKFLVVVSKKYPAELRAAVPKFLEATEVQSKKEDLKLEMLS 424 Query: 140 GMLDG---ASHPISPNPITFR 87 MLDG SHP + + FR Sbjct: 425 CMLDGNSDMSHPFVDSKLWFR 445 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,514,923 Number of Sequences: 219361 Number of extensions: 1234322 Number of successful extensions: 4208 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4203 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
