ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC107627.3| Homo sapiens chromosome 1 clone RP1-281L18, compl... 44 0.48
2gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complet... 44 0.48
3dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related... 44 0.48
4gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Canc... 44 0.48
5gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
6gb|AC140206.2| Mus musculus BAC clone RP24-446O8 from chromosome... 42 1.9
7gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome... 42 1.9
8gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome... 42 1.9
9gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.9
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
12gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.5
13gb|AC166097.5| Mus musculus BAC clone RP24-447P10 from chromosom... 40 7.5
14gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 40 7.5
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
16gb|AC132590.3| Mus musculus BAC clone RP24-273G1 from chromosome... 40 7.5
17emb|Z73899.1|CEZK829 Caenorhabditis elegans Cosmid ZK829, comple... 40 7.5
18gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 40 7.5
19gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Can... 40 7.5
20ref|XM_784828.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
21emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chr... 40 7.5
22emb|AL160253.16| Human DNA sequence from clone RP11-421D6 on chr... 40 7.5
23emb|AL161723.12| Human DNA sequence from clone RP13-172P13 on ch... 40 7.5
24emb|AL035467.23|HS288M22 Human DNA sequence from clone RP1-288M2... 40 7.5
25gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosom... 40 7.5
26gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, c... 40 7.5
27gb|AC160863.10| Mus musculus 10 BAC RP23-234F23 (Roswell Park Ca... 40 7.5
28gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can... 40 7.5
29gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, co... 40 7.5
30gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosom... 40 7.5
31gb|AC153937.11| Mus musculus 10 BAC RP24-458J4 (Roswell Park Can... 40 7.5
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
34dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
35gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complet... 40 7.5
36dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
37gb|AC009479.4|AC009479 Homo sapiens BAC clone RP11-278L6 from Y,... 40 7.5
38dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 40 7.5
40emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chr... 40 7.5
41emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 7.5
42gb|AC151533.3| Mus musculus BAC clone RP24-92D11 from 14, comple... 40 7.5
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
44emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310... 40 7.5
45emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573... 40 7.5
46gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, comple... 40 7.5
47emb|AL929083.8| Mouse DNA sequence from clone RP23-436E15 on chr... 40 7.5
48emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chr... 40 7.5
49emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chro... 40 7.5 
>gb|AC107627.3| Homo sapiens chromosome 1 clone RP1-281L18, complete sequence
          Length = 90509

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 481   aaatgaccattttgccattttttcca 506
             ||||||||||||| ||||||||||||
Sbjct: 10281 aaatgaccattttaccattttttcca 10306
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>gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complete sequence
          Length = 168448

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 405   tgattccaaagcccacgtcttc 426
             ||||||||||||||||||||||
Sbjct: 39383 tgattccaaagcccacgtcttc 39404
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>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon
              cluster
          Length = 249555

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 472    atagagtgaaaatgaccattttgcca 497
              ||||||| ||||||||||||||||||
Sbjct: 121847 atagagtaaaaatgaccattttgcca 121822
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>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 155839

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 476    agtgaaaatgaccattttgcca 497
              ||||||||||||||||||||||
Sbjct: 109577 agtgaaaatgaccattttgcca 109598
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>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0018J01, complete sequence
          Length = 82510

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  cctttttgcagattggtccct 359
            |||||||||||||||||||||
Sbjct: 8178 cctttttgcagattggtccct 8158
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>gb|AC140206.2| Mus musculus BAC clone RP24-446O8 from chromosome 16, complete sequence
          Length = 195790

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    cagagagagagaaaggaggcc 177
              |||||||||||||||||||||
Sbjct: 114359 cagagagagagaaaggaggcc 114339
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>gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome 16, complete sequence
          Length = 183323

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   cagagagagagaaaggaggcc 177
             |||||||||||||||||||||
Sbjct: 24278 cagagagagagaaaggaggcc 24258
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>gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome 16, complete sequence
          Length = 215805

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cagagagagagaaaggaggcc 177
              |||||||||||||||||||||
Sbjct: 214346 cagagagagagaaaggaggcc 214366
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 310     tttgccgccaggggcttgtttgtga 334
               |||||||||| ||||||||||||||
Sbjct: 1519948 tttgccgccaagggcttgtttgtga 1519924
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 339     cctttttgcagattggtccct 359
               |||||||||||||||||||||
Sbjct: 4212632 cctttttgcagattggtccct 4212652
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 339     cctttttgcagattggtccct 359
               |||||||||||||||||||||
Sbjct: 4221326 cctttttgcagattggtccct 4221346
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 1      ggcgggaaggggctgcgagcccatcccc 28
              ||||||||||| ||||||| ||||||||
Sbjct: 790802 ggcgggaagggcctgcgagaccatcccc 790775
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>gb|AC166097.5| Mus musculus BAC clone RP24-447P10 from chromosome 9, complete sequence
          Length = 196951

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ccagagagagagaaaggagg 175
              ||||||||||||||||||||
Sbjct: 157470 ccagagagagagaaaggagg 157489
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   gtgaaaatgaccattttgcc 496
             ||||||||||||||||||||
Sbjct: 40095 gtgaaaatgaccattttgcc 40076
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 27795965 gtgaaaatgaccattttgcc 27795946
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>gb|AC132590.3| Mus musculus BAC clone RP24-273G1 from chromosome 14, complete sequence
          Length = 161371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    cagagagagagaaaggaggc 176
              ||||||||||||||||||||
Sbjct: 124548 cagagagagagaaaggaggc 124567
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>emb|Z73899.1|CEZK829 Caenorhabditis elegans Cosmid ZK829, complete sequence
          Length = 32538

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 484  tgaccattttgccatttttt 503
            ||||||||||||||||||||
Sbjct: 7661 tgaccattttgccatttttt 7642
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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gagagagagaaaggaggccc 178
              ||||||||||||||||||||
Sbjct: 100833 gagagagagaaaggaggccc 100852
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>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 153084

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   tcagccagagagagagaaaggagg 175
             |||||||| |||||||||||||||
Sbjct: 36863 tcagccagggagagagaaaggagg 36840
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>ref|XM_784828.1| PREDICTED: Strongylocentrotus purpuratus similar to CG30437-PA,
           isoform A (LOC584984), partial mRNA
          Length = 1776

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 tgatgatatcattttcacaa 464
           ||||||||||||||||||||
Sbjct: 310 tgatgatatcattttcacaa 291
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>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    tgattccaaagcccacgtct 424
              ||||||||||||||||||||
Sbjct: 114694 tgattccaaagcccacgtct 114713
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>emb|AL160253.16| Human DNA sequence from clone RP11-421D6 on chromosome 13, complete
             sequence
          Length = 183580

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   agccagagagagagaaagga 173
             ||||||||||||||||||||
Sbjct: 50293 agccagagagagagaaagga 50274
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>emb|AL161723.12| Human DNA sequence from clone RP13-172P13 on chromosome X, complete
              sequence
          Length = 155725

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    gccagagagagagaaaggaggccc 178
              ||||||||||||| ||||||||||
Sbjct: 134082 gccagagagagagcaaggaggccc 134059
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>emb|AL035467.23|HS288M22 Human DNA sequence from clone RP1-288M22 on chromosome 6q12-13
            Contains a novel gene, the gene for a novel protein
            (FLJ13189) and a CpG Island, complete sequence
          Length = 155960

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  agaaattagaaggcgaattt 241
            ||||||||||||||||||||
Sbjct: 8164 agaaattagaaggcgaattt 8183
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>gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosome 9, complete sequence
          Length = 215002

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    ccagagagagagaaaggagg 175
              ||||||||||||||||||||
Sbjct: 182827 ccagagagagagaaaggagg 182808
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>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aaaatacgttttcagaaatt 228
              ||||||||||||||||||||
Sbjct: 161143 aaaatacgttttcagaaatt 161162
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>gb|AC160863.10| Mus musculus 10 BAC RP23-234F23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 189718

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    agccagagagagagaaagga 173
              ||||||||||||||||||||
Sbjct: 142920 agccagagagagagaaagga 142939
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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 472    atagagtgaaaatgaccattttgc 495
              ||||||| ||||||||||||||||
Sbjct: 123415 atagagtaaaaatgaccattttgc 123392
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>gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, complete sequence
          Length = 212092

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    tgaccattttgccatttttt 503
              ||||||||||||||||||||
Sbjct: 132188 tgaccattttgccatttttt 132207
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>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete
             sequence
          Length = 159755

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tcagccagagagagagaaag 171
             ||||||||||||||||||||
Sbjct: 28410 tcagccagagagagagaaag 28391
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>gb|AC153937.11| Mus musculus 10 BAC RP24-458J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 195695

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   agccagagagagagaaagga 173
             ||||||||||||||||||||
Sbjct: 49177 agccagagagagagaaagga 49196
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 24689896 gtgaaaatgaccattttgcc 24689877



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 24137498 gtgaaaatgaccattttgcc 24137517
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 27887289 gtgaaaatgaccattttgcc 27887270
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 21076850 gtgaaaatgaccattttgcc 21076831
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>gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complete sequence
          Length = 159249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    tgaaaatgaccattttgcca 497
              ||||||||||||||||||||
Sbjct: 144298 tgaaaatgaccattttgcca 144317
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144D11
          Length = 157943

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   gtgaaaatgaccattttgcc 496
             ||||||||||||||||||||
Sbjct: 44395 gtgaaaatgaccattttgcc 44376
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>gb|AC009479.4|AC009479 Homo sapiens BAC clone RP11-278L6 from Y, complete sequence
          Length = 155299

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    gccagagagagagaaaggaggccc 178
              ||||||||||||| ||||||||||
Sbjct: 140300 gccagagagagagcaaggaggccc 140277
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>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1014_G12
          Length = 158830

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    gtgaaaatgaccattttgcc 496
              ||||||||||||||||||||
Sbjct: 140052 gtgaaaatgaccattttgcc 140033
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   gtgaaaatgaccattttgcc 496
             ||||||||||||||||||||
Sbjct: 17928 gtgaaaatgaccattttgcc 17947
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>emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chromosome 13, complete
             sequence
          Length = 230723

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   tcagccagagagagagaaag 171
             ||||||||||||||||||||
Sbjct: 79129 tcagccagagagagagaaag 79148
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     agccagagagagagaaagga 173
               ||||||||||||||||||||
Sbjct: 1547062 agccagagagagagaaagga 1547043
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>gb|AC151533.3| Mus musculus BAC clone RP24-92D11 from 14, complete sequence
          Length = 230285

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   cagagagagagaaaggaggc 176
             ||||||||||||||||||||
Sbjct: 62620 cagagagagagaaaggaggc 62639
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 24618102 gtgaaaatgaccattttgcc 24618083



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 477      gtgaaaatgaccattttgcc 496
                ||||||||||||||||||||
Sbjct: 24065704 gtgaaaatgaccattttgcc 24065723
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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   gtgaaaatgaccattttgcc 496
             ||||||||||||||||||||
Sbjct: 22189 gtgaaaatgaccattttgcc 22208
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>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 143895

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    gtgaaaatgaccattttgcc 496
              ||||||||||||||||||||
Sbjct: 134762 gtgaaaatgaccattttgcc 134743
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>gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, complete sequence
          Length = 168588

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ccagagagagagaaaggagg 175
             ||||||||||||||||||||
Sbjct: 16617 ccagagagagagaaaggagg 16636
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>emb|AL929083.8| Mouse DNA sequence from clone RP23-436E15 on chromosome 2, complete
            sequence
          Length = 84875

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ccagagagagagaaaggagg 175
            ||||||||||||||||||||
Sbjct: 4728 ccagagagagagaaaggagg 4709
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>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete
             sequence
          Length = 202474

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   aaatgaccattttgccattt 500
             ||||||||||||||||||||
Sbjct: 63886 aaatgaccattttgccattt 63905
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>emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chromosome X, complete
             sequence
          Length = 123180

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tcagccagagagagagaaag 171
             ||||||||||||||||||||
Sbjct: 17043 tcagccagagagagagaaag 17024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,221,344
Number of Sequences: 3902068
Number of extensions: 13221344
Number of successful extensions: 191966
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 191325
Number of HSP's gapped (non-prelim): 641
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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