ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 471 ggggaagaagcccggtctgtcgcaaagcgcctccttcccggcgagaggg 519 |||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct: 102939 ggggaagaagcccgcgctgtcgcagagcgcgtcgttcccggcgagaggg 102987
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 471 ggggaagaagcccggtctgtcgcaaagcgcctccttcccggcgagaggg 519 |||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct: 20560145 ggggaagaagcccgcgctgtcgcagagcgcgtcgttcccggcgagaggg 20560193
>dbj|AK073940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076E07, full insert sequence Length = 1865 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 471 ggggaagaagcccggtctgtcgcaaagcgcctccttcccggcgagaggg 519 |||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct: 494 ggggaagaagcccgcgctgtcgcagagcgcgtcgttcccggcgagaggg 542
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 471 ggggaagaagcccggtctgtcgcaaagcgcctccttcccggcgagaggg 519 |||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct: 20870380 ggggaagaagcccgcgctgtcgcagagcgcgtcgttcccggcgagaggg 20870428
>emb|AL583807.20| Human DNA sequence from clone RP11-105C7 on chromosome 9 Contains the 5' end of the LAMC3 gene for laminin gamma 3 and a CpG island, complete sequence Length = 92607 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 25 ctccccctcacccactcctgcttct 49 ||||||||||||||||||||||||| Sbjct: 88528 ctccccctcacccactcctgcttct 88504
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 32 tcacccactcctgcttcttcttc 54 ||||||||||||||||||||||| Sbjct: 573610 tcacccactcctgcttcttcttc 573632
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 aggtggtgtcagcctcggcggc 464 |||||||||||||||||||||| Sbjct: 571 aggtggtgtcagcctcggcggc 550
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 403 gacgcgggcgggaggaagaaggggaa 428 ||||| |||||||||||||||||||| Sbjct: 97789 gacgccggcgggaggaagaaggggaa 97814
>gb|AC103890.1| 16q24.3 clone, complete sequence Length = 129848 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 410 gcgggaggaagaaggggaatgtgctg 435 ||||||||||||||||| |||||||| Sbjct: 26209 gcgggaggaagaagggggatgtgctg 26234
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 403 gacgcgggcgggaggaagaaggggaa 428 ||||| |||||||||||||||||||| Sbjct: 20457641 gacgccggcgggaggaagaaggggaa 20457666
>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence Length = 129785 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 410 gcgggaggaagaaggggaatgtgctg 435 ||||||||||||||||| |||||||| Sbjct: 103577 gcgggaggaagaagggggatgtgctg 103552
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 403 gacgcgggcgggaggaagaaggggaa 428 ||||| |||||||||||||||||||| Sbjct: 20468913 gacgccggcgggaggaagaaggggaa 20468938
>gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosynthetic gene cluster, complete sequence Length = 25306 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 tcgccgtggccgcgccggtgga 284 |||||||||||||||||||||| Sbjct: 13700 tcgccgtggccgcgccggtgga 13679
>gb|AF192912.1| Homo sapiens OC120 (OC120) mRNA, complete cds Length = 1648 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 240 gcctcggcggcaccgcggggg 220
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 tcgtcgtcaaggcccgcaagg 256 ||||||||||||||||||||| Sbjct: 309084 tcgtcgtcaaggcccgcaagg 309064 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggacgtcgccgtggccgcgc 277 |||||||||||||||||||| Sbjct: 435547 ggacgtcgccgtggccgcgc 435566
>ref|NM_016274.3| Homo sapiens pleckstrin homology domain containing, family O member 1 (PLEKHO1), mRNA Length = 1633 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 231 gcctcggcggcaccgcggggg 211
>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the 5' end of the ZA20D1 gene for zinc finger, A20 domain containing 1, a ribosomal protein L6 (RPL6) pseudogene, the VPS45A gene for vacuolar protein sorting 45A (yeast), the gene for CK2 interacting protein 1; HQ0024c protein (CKIP-1), a novel gene and a CpG island, complete sequence Length = 188211 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 37812 gcctcggcggcaccgcggggg 37832
>gb|AC162385.4| Mus musculus 10 BAC RP24-397D18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202541 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cctcacccactcctgcttctt 50 ||||||||||||||||||||| Sbjct: 178342 cctcacccactcctgcttctt 178362
>emb|AL669888.8| Mouse DNA sequence from clone RP23-31B23 on chromosome 11, complete sequence Length = 91074 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 21 tcgtctccccctcacccactcctgcttcttcttctct 57 ||||||||||||| ||| | ||| ||||||||||||| Sbjct: 37001 tcgtctccccctccccccccccttcttcttcttctct 36965
>emb|CR621946.1| full-length cDNA clone CS0DH007YG05 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1233 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 111 gcctcggcggcaccgcggggg 91
>emb|CR620142.1| full-length cDNA clone CS0DJ014YD12 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1457 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 86 gcctcggcggcaccgcggggg 66
>emb|CR618253.1| full-length cDNA clone CS0DC002YK07 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1651 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 264 gcctcggcggcaccgcggggg 244
>emb|CR609398.1| full-length cDNA clone CS0DN002YG18 of Adult brain of Homo sapiens (human) Length = 1383 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 35 gcctcggcggcaccgcggggg 15
>emb|CR596096.1| full-length cDNA clone CS0DJ013YB19 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1464 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 92 gcctcggcggcaccgcggggg 72
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cccgcaaggaggacgtcgccg 268 ||||||||||||||||||||| Sbjct: 22925523 cccgcaaggaggacgtcgccg 22925543
>gb|AF291105.1|AF291105 Homo sapiens c-Jun binding protein JBP mRNA, complete cds Length = 1633 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 231 gcctcggcggcaccgcggggg 211
>gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188305 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 cctcacccactcctgcttctt 50 ||||||||||||||||||||| Sbjct: 79248 cctcacccactcctgcttctt 79228
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cccgcaaggaggacgtcgccg 268 ||||||||||||||||||||| Sbjct: 129080 cccgcaaggaggacgtcgccg 129100
>gb|AF168676.1|AF168676 Homo sapiens TNF intracellular domain-interacting protein mRNA, complete cds Length = 1416 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 35 gcctcggcggcaccgcggggg 15
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 tcgccgtggccgcgccggtggatgt 287 ||||||||||||||| ||||||||| Sbjct: 551494 tcgccgtggccgcgcaggtggatgt 551470
>gb|BC010149.2| Homo sapiens pleckstrin homology domain containing, family O member 1, mRNA (cDNA clone MGC:19483 IMAGE:4330014), complete cds Length = 1417 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcggggg 474 ||||||||||||||||||||| Sbjct: 31 gcctcggcggcaccgcggggg 11
>dbj|AP006135.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT30O01, TM0233, complete sequence Length = 126062 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 cttcttctctccctaatttcc 68 ||||||||||||||||||||| Sbjct: 123586 cttcttctctccctaatttcc 123606
>emb|AJ310966.1|HHE310966 Herniaria hemistemon partial 18S rRNA gene, internal transcribed spacer 1, 5.8S rRNA gene, internal transcribed spacer 2 and partial 28S rRNA gene Length = 629 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 gtctccccctcacccactcct 43 ||||||||||||||||||||| Sbjct: 432 gtctccccctcacccactcct 452
>gb|AC129477.11| Mus musculus chromosome 13, clone RP23-98D15, complete sequence Length = 251066 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 213501 ctcacccactcctgcttctt 213482
>gb|AC161184.5| Mus musculus chromosome 8, clone RP24-210P13, complete sequence Length = 156491 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 131908 ctcacccactcctgcttctt 131927 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 38284 ctcacccactcctgcttctt 38303
>gb|AC166039.6| Mus musculus chromosome 8, clone RP23-285M10, complete sequence Length = 168321 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 81619 ctcacccactcctgcttctt 81638
>gb|AC164310.2| Mus musculus BAC clone RP23-139E15 from chromosome 8, complete sequence Length = 204269 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 200762 ctcacccactcctgcttctt 200781
>ref|XM_464169.1| Oryza sativa (japonica cultivar-group), mRNA Length = 180 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtggatgtggatggtg 295 |||||||||||||||||||| Sbjct: 160 gccggtggatgtggatggtg 179
>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence Length = 210022 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 55014 ctcacccactcctgcttctt 55033
>gb|AC134533.3| Mus musculus BAC clone RP24-560C15 from chromosome 8, complete sequence Length = 152896 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 16013 ctcacccactcctgcttctt 15994
>gb|AF280831.1| Uncultured bacterium tbr4-15 16S ribosomal RNA gene, partial sequence Length = 1513 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1420 ccgcaaggaggacgtcgccg 1439
>gb|AC112142.4| Mus musculus BAC clone RP23-4P23 from chromosome 14, complete sequence Length = 230847 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 1265 ctcacccactcctgcttctt 1284
>gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome 13, complete sequence Length = 208298 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 53671 ctcacccactcctgcttctt 53652
>gb|AC138716.2| Mus musculus BAC clone RP23-241B5 from chromosome 14, complete sequence Length = 167083 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 4707 ctcacccactcctgcttctt 4688
>gb|AC142213.3| Mus musculus BAC clone RP24-460K23 from chromosome 17, complete sequence Length = 166244 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 39242 ctcacccactcctgcttctt 39261
>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence Length = 366816 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctgcttcttcttctctccct 61 |||||||||||||||||||| Sbjct: 195528 ctgcttcttcttctctccct 195547
>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence Length = 222692 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 213180 ctcacccactcctgcttctt 213199
>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence Length = 198984 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 108159 ctcacccactcctgcttctt 108178
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence Length = 248320 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 92926 ctcacccactcctgcttctt 92907
>gb|AF371753.1| Uncultured bacterium clone p-241-o5 16S ribosomal RNA gene, partial sequence Length = 1429 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1389 ccgcaaggaggacgtcgccg 1408
>gb|AF371752.1| Uncultured bacterium clone p-422-o3 16S ribosomal RNA gene, partial sequence Length = 1428 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1388 ccgcaaggaggacgtcgccg 1407
>gb|AF371715.1| Uncultured bacterium clone p-2559-9F5 16S ribosomal RNA gene, partial sequence Length = 1435 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1412 ccgcaaggaggacgtcgccg 1431
>gb|U58258.1|ULU58258 Unidentified low G+C gram-positive bacterium small subunit ribosomal RNA gene, partial sequence Length = 324 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 275 ccgcaaggaggacgtcgccg 294
>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 63712 ctcacccactcctgcttctt 63693
>gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, complete sequence Length = 205639 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 199834 ctcacccactcctgcttctt 199853
>gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, complete sequence Length = 205819 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 188117 ctcacccactcctgcttctt 188136
>gb|AC155314.2| Mus musculus BAC clone RP23-275G21 from chromosome 15, complete sequence Length = 205639 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 31383 ctcacccactcctgcttctt 31364
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ggaagaaggggaatgtgctg 435 |||||||||||||||||||| Sbjct: 31489533 ggaagaaggggaatgtgctg 31489514
>gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, complete sequence Length = 208461 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 139028 ctcacccactcctgcttctt 139047
>gb|AC131178.11| Mus musculus chromosome 15, clone RP23-376I10, complete sequence Length = 170753 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 124619 ctcacccactcctgcttctt 124638
>gb|AC121852.4| Mus musculus chromosome 3 clone RP24-93P18, complete sequence Length = 206414 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 115477 ctcacccactcctgcttctt 115458
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ggaagaaggggaatgtgctg 435 |||||||||||||||||||| Sbjct: 103063 ggaagaaggggaatgtgctg 103082
>emb|CR936842.21| Mouse DNA sequence from clone CH29-189K17 on chromosome 1, complete sequence Length = 208212 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 4410 ctcacccactcctgcttctt 4391
>emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chromosome 12, complete sequence Length = 181654 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 107783 ctcacccactcctgcttctt 107764
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete sequence Length = 221525 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 73121 ctcacccactcctgcttctt 73102
>gb|AC130212.4| Mus musculus BAC clone RP23-461L3 from chromosome 15, complete sequence Length = 170741 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 97710 ctcacccactcctgcttctt 97729
>gb|AC125318.4| Mus musculus BAC clone RP24-301F13 from chromosome 8, complete sequence Length = 152405 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 79091 ctcacccactcctgcttctt 79072
>gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosome 8, complete sequence Length = 155270 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 20799 ctcacccactcctgcttctt 20780
>gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosome 15, complete sequence Length = 195429 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 173050 ctcacccactcctgcttctt 173069
>gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosome 8, complete sequence Length = 202899 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 24901 ctcacccactcctgcttctt 24882
>gb|AC116180.4| Mus musculus BAC clone RP24-167M11 from chromosome 9, complete sequence Length = 149442 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 52744 ctcacccactcctgcttctt 52763
>gb|AC124562.4| Mus musculus BAC clone RP23-175B1 from 13, complete sequence Length = 198817 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 48071 ctcacccactcctgcttctt 48052
>gb|AC125217.3| Mus musculus BAC clone RP23-112D14 from 8, complete sequence Length = 191344 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 132784 ctcacccactcctgcttctt 132803
>gb|AC156953.9| Mus musculus 6 BAC RP24-568F14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173297 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 140856 ctcacccactcctgcttctt 140837
>gb|AC129174.3| Mus musculus BAC clone RP23-63H3 from chromosome 8, complete sequence Length = 209360 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 110941 ctcacccactcctgcttctt 110960 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 17315 ctcacccactcctgcttctt 17334
>gb|AY756145.2| Anaerobic bacterium Glu3 16S ribosomal RNA gene, partial sequence Length = 1520 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1494 ccgcaaggaggacgtcgccg 1513
>gb|AC161261.5| Mus musculus BAC clone RP23-376D23 from chromosome 17, complete sequence Length = 190041 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 180681 ctcacccactcctgcttctt 180700
>gb|AC157940.5| Mus musculus BAC clone RP24-439N9 from chromosome 17, complete sequence Length = 167247 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 73148 ctcacccactcctgcttctt 73167
>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence Length = 181487 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 160059 ctcacccactcctgcttctt 160040
>gb|AC102399.11| Mus musculus chromosome 3, clone RP24-217J3, complete sequence Length = 168566 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 30551 ctcacccactcctgcttctt 30570
>ref|XM_784414.1| PREDICTED: Strongylocentrotus purpuratus similar to chromatin assembly factor 1, subunit B (p60) (LOC584554), mRNA Length = 1212 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tccccctcacccactcctgc 45 |||||||||||||||||||| Sbjct: 508 tccccctcacccactcctgc 527
>gb|AC046185.14| Homo sapiens chromosome 17, clone RP11-51F16, complete sequence Length = 173637 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 ggcaaagcaagccaagccag 577 |||||||||||||||||||| Sbjct: 115884 ggcaaagcaagccaagccag 115903
>emb|AL136371.8| Human DNA sequence from clone RP11-110P20 on chromosome 1q31.1 Contains STSs, GSSs and a CpG island, complete sequence Length = 147784 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 tcttcttctctccctaatttcccc 70 ||||||||| |||||||||||||| Sbjct: 36505 tcttcttctttccctaatttcccc 36528
>ref|XM_790713.1| PREDICTED: Strongylocentrotus purpuratus similar to Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (Chromatin assembly factor I p60 subunit) (CAF-I 60 kDa subunit) (CAF-Ip60) (M-phase phosphoprotein 7) (LOC591133), mRNA Length = 1923 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tccccctcacccactcctgc 45 |||||||||||||||||||| Sbjct: 1213 tccccctcacccactcctgc 1232
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ggaagaaggggaatgtgctg 435 |||||||||||||||||||| Sbjct: 6267 ggaagaaggggaatgtgctg 6286
>gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, complete sequence Length = 174676 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggcgggaggaagaaggggaa 428 |||||||||||||||||||| Sbjct: 57320 ggcgggaggaagaaggggaa 57339
>gb|DQ125677.1| Uncultured bacterium clone AKAU3750 16S ribosomal RNA gene, partial sequence Length = 1442 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1397 ccgcaaggaggacgtcgccg 1416
>gb|DQ125655.1| Uncultured bacterium clone AKAU3717 16S ribosomal RNA gene, partial sequence Length = 1494 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1455 ccgcaaggaggacgtcgccg 1474
>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete sequence Length = 122811 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 102814 ctcacccactcctgcttctt 102795
>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence Length = 148650 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 aacatcgtcgtcaaggcccgcaag 255 |||||||||| ||||||||||||| Sbjct: 5538 aacatcgtcgacaaggcccgcaag 5515
>emb|AL645757.13| Mouse DNA sequence from clone DN-340J1 on chromosome 3, complete sequence Length = 134040 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctgcttcttcttctctccct 61 |||||||||||||||||||| Sbjct: 105376 ctgcttcttcttctctccct 105395
>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence Length = 208510 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 83374 ctcacccactcctgcttctt 83355
>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete sequence Length = 206110 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 186262 ctcacccactcctgcttctt 186281
>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete sequence Length = 208230 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 cccactcctgcttcttcttc 54 |||||||||||||||||||| Sbjct: 21747 cccactcctgcttcttcttc 21766
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cgtcgccgtggccgcgccgg 280 |||||||||||||||||||| Sbjct: 3784795 cgtcgccgtggccgcgccgg 3784814
>gb|AC117588.11| Mus musculus chromosome 15, clone RP23-177B8, complete sequence Length = 211177 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 69747 ctcacccactcctgcttctt 69728
>gb|AC152161.4| Mus musculus chromosome 19, clone RP23-162O21, complete sequence Length = 194652 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 58809 ctcacccactcctgcttctt 58828
>gb|DQ346669.1| Rhodococcus sp. DK17 succinyl CoA:3-oxoadipate CoA transferase beta subunit (pcaJ), succinyl CoA:3-oxoadipate CoA transferase alpha subunit (pcaI), protocatechuate 3,4 dioxygenase beta subunit (pcaH), protocatechuate 3,4 dioxygenase alpha subunit (pcaG), 3-carboxymuconate cycloisomerase (pcaB), 3-oxoadipate enol-lactone hydrolase (pcaL), and PcaR genes, complete cds Length = 6372 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcgggg 473 |||||||||||||||||||| Sbjct: 2601 gcctcggcggcaccgcgggg 2582
>gb|AC117257.4| Mus musculus BAC clone RP24-484F21 from chromosome 17, complete sequence Length = 187399 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 152920 ctcacccactcctgcttctt 152901
>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence Length = 185522 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 127137 ctcacccactcctgcttctt 127118
>gb|AC040914.5|AC040914 Homo sapiens chromosome 8, clone RP11-343P9, complete sequence Length = 183067 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 gacctccctggcaaagcaag 568 |||||||||||||||||||| Sbjct: 67563 gacctccctggcaaagcaag 67544
>gb|AC156285.9| Mus musculus 6 BAC RP24-405H19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145190 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 81328 ctcacccactcctgcttctt 81309
>gb|AC158673.10| Mus musculus 6 BAC RP23-124O23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 193221 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 73067 ctcacccactcctgcttctt 73048
>dbj|AB200629.1| uncultured bacterium gene for 16S rRNA, partial sequence, clone: C82 Length = 954 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 911 ccgcaaggaggacgtcgccg 930
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ggaggacgtcgccgtggccg 274 |||||||||||||||||||| Sbjct: 1923931 ggaggacgtcgccgtggccg 1923912
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ggaagaaggggaatgtgctg 435 |||||||||||||||||||| Sbjct: 31580049 ggaagaaggggaatgtgctg 31580030
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtggatgtggatggtg 295 |||||||||||||||||||| Sbjct: 2674019 gccggtggatgtggatggtg 2674038
>gb|AY169427.1| Faecalibacterium prausnitzii clone 1-79 16S ribosomal RNA gene, partial sequence Length = 1473 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1411 ccgcaaggaggacgtcgccg 1430
>dbj|AB011057.1| Clostridium josui gene for 16S rRNA, partial sequence Length = 1565 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1524 ccgcaaggaggacgtcgccg 1543
>dbj|AP000051.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 22/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tggatgtggatggtggtgat 300 |||||||||||||||||||| Sbjct: 39478 tggatgtggatggtggtgat 39497
>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence Length = 194165 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 78373 ctcacccactcctgcttctt 78354
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 tgaacctgctnatcccctttcgt 24 |||||||||| |||||||||||| Sbjct: 591053 tgaacctgctaatcccctttcgt 591075
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ggaggacgtcgccgtggccg 274 |||||||||||||||||||| Sbjct: 52711 ggaggacgtcgccgtggccg 52692
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ggaggacgtcgccgtggccg 274 |||||||||||||||||||| Sbjct: 124409 ggaggacgtcgccgtggccg 124390
>emb|BX678769.4| Mouse DNA sequence from clone RP23-435C20 on chromosome X, complete sequence Length = 205524 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 158033 ctcacccactcctgcttctt 158052
>dbj|BS000188.1| Pan troglodytes chromosome 22 clone:RP43-084B17, map 22, complete sequences Length = 170687 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tggatgtggatggtggtgat 300 |||||||||||||||||||| Sbjct: 21703 tggatgtggatggtggtgat 21722
>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0479D12 Length = 148362 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtggatgtggatggtg 295 |||||||||||||||||||| Sbjct: 76241 gccggtggatgtggatggtg 76260
>emb|AJ229250.1|CSA229250 Clostridium from anoxic bulk soil 16S rRNA gene (strain FCB90-2) Length = 1434 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1401 ccgcaaggaggacgtcgccg 1420
>emb|X71852.1|CP16SRNAA C.papyrosolvens gene for 16S ribosomal RNA Length = 1514 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1418 ccgcaaggaggacgtcgccg 1437
>emb|X71847.1|CC16SRNAB C.cellulolyticum gene for 16S ribosomal RNA Length = 1642 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1548 ccgcaaggaggacgtcgccg 1567
>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence Length = 163565 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 87693 ctcacccactcctgcttctt 87674
>gb|AY105843.1| Zea mays PCO073973 mRNA sequence Length = 1351 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 490 tcgcaaagcgcctccttcccggcg 513 ||||| |||||||||||||||||| Sbjct: 49 tcgcagagcgcctccttcccggcg 72
>dbj|AP000317.2| Homo sapiens genomic DNA, chromosome 21 clone:RP1-24517, complete sequence Length = 97831 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tggatgtggatggtggtgat 300 |||||||||||||||||||| Sbjct: 39478 tggatgtggatggtggtgat 39497
>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tggatgtggatggtggtgat 300 |||||||||||||||||||| Sbjct: 160687 tggatgtggatggtggtgat 160706
>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete sequence Length = 155441 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cctgcttcttcttctctccc 60 |||||||||||||||||||| Sbjct: 115885 cctgcttcttcttctctccc 115866
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gggaggacaacatcgtcgtc 243 |||||||||||||||||||| Sbjct: 463022 gggaggacaacatcgtcgtc 463003
>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete sequence Length = 198814 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 33907 ctcacccactcctgcttctt 33888
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gccggccagggcgcctacca 385 |||||||||||||||||||| Sbjct: 1970960 gccggccagggcgcctacca 1970979
>gb|AF003947.1|AF003947 Rhodococcus opacus succinyl CoA:3-oxoadipate CoA transferase subunit homolog (pcaI') gene, partial cds, protocatechuate dioxygenase beta subunit (pcaH), protocatechuate dioxygenase alpha subunit (pcaG), 3-carboxy-cis,cis-muconate cycloisomerase homolog (pcaB), 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase (pcaL) and PcaR (pcaR) genes, complete cds, and 3-oxoadipyl CoA thiolase homolog (pcaF') gene, partial cds Length = 5475 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 gcctcggcggcaccgcgggg 473 |||||||||||||||||||| Sbjct: 1422 gcctcggcggcaccgcgggg 1403
>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete sequence Length = 211944 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 42466 ctcacccactcctgcttctt 42485
>emb|AL805930.16| Mouse DNA sequence from clone RP23-455B8 on chromosome 4, complete sequence Length = 174746 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 42127 ctcacccactcctgcttctt 42146
>gb|AC117775.8| Mus musculus chromosome 16, clone RP24-535F23, complete sequence Length = 127815 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 77270 ctcacccactcctgcttctt 77289
>emb|CT009759.12| Mouse DNA sequence from clone RP23-213P21 on chromosome 13, complete sequence Length = 199967 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 141474 ctcacccactcctgcttctt 141455
>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence Length = 171550 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 1351 ctcacccactcctgcttctt 1332
>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete sequence Length = 178341 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tccccctcacccactcctgc 45 |||||||||||||||||||| Sbjct: 76699 tccccctcacccactcctgc 76680
>gb|AC133094.4| Mus musculus BAC clone RP23-479K21 from 8, complete sequence Length = 183826 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 149685 ctcacccactcctgcttctt 149704 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 5614 ctcacccactcctgcttctt 5633
>gb|AC151975.1| Mus musculus BAC clone RP24-423F11 from 8, complete sequence Length = 198686 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 169737 ctcacccactcctgcttctt 169718
>gb|AC154348.1| Mus musculus BAC clone RP24-531G19 from 16, complete sequence Length = 139363 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 122899 ctcacccactcctgcttctt 122880
>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence Length = 214005 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 190304 ctcacccactcctgcttctt 190285
>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence Length = 204919 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ccctcacccactcctgcttc 48 |||||||||||||||||||| Sbjct: 170116 ccctcacccactcctgcttc 170135
>gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complete sequence Length = 197633 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 99893 ctcacccactcctgcttctt 99874
>gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, complete sequence Length = 212119 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 151132 ctcacccactcctgcttctt 151113
>gb|AC173479.1| Mus musculus BAC clone RP23-428F8 from chromosome 3, complete sequence Length = 198897 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 actcctgcttcttcttctct 57 |||||||||||||||||||| Sbjct: 161274 actcctgcttcttcttctct 161293
>gb|AC154851.3| Mus musculus BAC clone RP23-28P10 from chromosome 13, complete sequence Length = 234202 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 163976 ctcacccactcctgcttctt 163957
>gb|AC172194.1| Mus musculus BAC clone CH36-165I3 from chromosome 9, complete sequence Length = 197712 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 125399 ctcacccactcctgcttctt 125380
>gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, complete sequence Length = 146054 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 88962 ctcacccactcctgcttctt 88943
>gb|AC091313.11| Mus musculus chromosome 3, clone RP23-173I1, complete sequence Length = 202531 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 178589 ctcacccactcctgcttctt 178608
>gb|AC164435.3| Mus musculus BAC clone RP23-151F4 from chromosome 3, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 actcctgcttcttcttctct 57 |||||||||||||||||||| Sbjct: 194870 actcctgcttcttcttctct 194851
>emb|Y15986.1|CSPY15986 Clostridium sp. partial 16S rRNA gene, strain RCel1 Length = 1453 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccgcaaggaggacgtcgccg 268 |||||||||||||||||||| Sbjct: 1393 ccgcaaggaggacgtcgccg 1412
>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete sequence Length = 187418 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 24140 ctcacccactcctgcttctt 24159
>emb|AL596283.10| Mouse DNA sequence from clone DN-257N2 on chromosome 1, complete sequence Length = 162143 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 14997 ctcacccactcctgcttctt 15016
>emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chromosome 2, complete sequence Length = 178656 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 86015 ctcacccactcctgcttctt 85996
>emb|AL772194.6| Mouse DNA sequence from clone RP23-331M18 on chromosome 4, complete sequence Length = 176496 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 45063 ctcacccactcctgcttctt 45082
>emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on chromosome 4, complete sequence Length = 211580 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 31569 ctcacccactcctgcttctt 31588
>emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chromosome X, complete sequence Length = 197638 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 34168 ctcacccactcctgcttctt 34149
>emb|AL731725.8| Mouse DNA sequence from clone RP23-146P19 on chromosome X, complete sequence Length = 213743 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 71259 ctcacccactcctgcttctt 71278
>dbj|AP000166.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 2/9, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tggatgtggatggtggtgat 300 |||||||||||||||||||| Sbjct: 31446 tggatgtggatggtggtgat 31465
>emb|AL691436.7| Mouse DNA sequence from clone RP23-357M4 on chromosome 3, complete sequence Length = 66628 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctgcttcttcttctctccct 61 |||||||||||||||||||| Sbjct: 19106 ctgcttcttcttctctccct 19125
>emb|AL713916.13| Mouse DNA sequence from clone RP23-129N3 on chromosome 1, complete sequence Length = 102194 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 5910 ctcacccactcctgcttctt 5929
>emb|AL671896.4| Mouse DNA sequence from clone RP23-354F16 on chromosome X, complete sequence Length = 78197 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctcacccactcctgcttctt 50 |||||||||||||||||||| Sbjct: 42097 ctcacccactcctgcttctt 42078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,899,178 Number of Sequences: 3902068 Number of extensions: 4899178 Number of successful extensions: 119759 Number of sequences better than 10.0: 160 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118726 Number of HSP's gapped (non-prelim): 1033 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
