ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h16 |
|---|---|
| Clone Library Name | barley_pub |
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 44.7 bits (104), Expect = 3e-04 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = +1 Query: 226 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 366 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 367 GLNLXXXXXXXXIERPHVEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 546 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 547 RGGLREE 567 R EE Sbjct: 158 RREREEE 164 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +1 Query: 205 KCQHH-----KVPARKKQCVDECHSREHHHPSRASCERK 306 +CQ H + P RK+QCV EC R +P R E + Sbjct: 126 ECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 42.0 bits (97), Expect = 0.002 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Frame = +1 Query: 166 RPVDD--QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 339 R DD Q + C +CQ + R + D+C R E + DP R+ Sbjct: 32 RSEDDPQQRYEDCRKRCQ---LETRGQTEQDKCEDRSETQLK----EEQQRDGEDPQRRY 84 Query: 340 Q-CVQQCMRYGLNLXXXXXXXXIERPHVEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVD 513 Q C Q C + L E+ ++ + D+ C +CQ + P RK+QCV Sbjct: 85 QDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVK 144 Query: 514 ECHRREHHHPSRG 552 EC + P +G Sbjct: 145 ECREQYQEDPWKG 157 Score = 33.9 bits (76), Expect = 0.44 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1 Query: 178 DQGNDSCDIKCQ-HHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 339 D+ C +CQ + P RK+QCV EC + P + E K WR+ +E Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 37.7 bits (86), Expect = 0.031 Identities = 30/147 (20%), Positives = 53/147 (36%) Frame = +1 Query: 196 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 375 C+ + + K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1064 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK---- 1118 Query: 376 LXXXXXXXXIERPHVEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRGG 555 E + C+ + K A KK+C + + + Sbjct: 1119 ------------------EKEAAEKKRCEEAAKREKEAAEKKKCAEAAKKEKE------- 1153 Query: 556 LREEV*PLERPDKEGTVRAKRACATAS 636 E+ E KE K+ CA A+ Sbjct: 1154 ATEKQKCAEAAKKEKEAAEKKKCAEAA 1180 Score = 37.7 bits (86), Expect = 0.031 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 22/174 (12%) Frame = +1 Query: 181 QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ--- 351 +G C + K A KK+C E +E ++ CE + ++ A K+QC + Sbjct: 963 KGKKKCKKLGKKSKRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAK 1021 Query: 352 ---------QCMRYGLNLXXXXXXXXIERPHVEEVEVDDQSNDSCDHKCQHHKVPARKKQ 504 QC L E + E +Q C+ + + K A KKQ Sbjct: 1022 KLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQ 1079 Query: 505 CVDECHRREHHHPSRGGLREEV*PL----------ERPDKEGTVRAKRACATAS 636 C +E ++E + E L ER KE K+ C A+ Sbjct: 1080 C-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKKEKEAAEKKRCEEAA 1132
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 33.1 bits (74), Expect = 0.76 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +1 Query: 268 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHVEEVEVDDQS 447 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 448 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRGGLREE 567 + + Q H+ +++ E HR+E H +G E+ Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>PBL9F_EUGGR (P84740) Photoactivated adenylate cyclase beta-subunit-like protein| 1224-5/9F Length = 855 Score = 32.0 bits (71), Expect = 1.7 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -1 Query: 589 RVSPMATLPLASRPCSGDDAPVCGTRPRT 503 RV LP++ RP DD P C RPRT Sbjct: 408 RVGQYEALPISQRPPIFDDTPKCNPRPRT 436
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +1 Query: 424 EVEVDDQSNDSCDHKCQHHKVPARKKQCV-----DECHRREHHHPSRGGLREEV*PLERP 588 EV D N HK + HK ++ K+ D + +H H + R+EV +E Sbjct: 31 EVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSSEEDRDKKHKHKHKHKKHKRKEV--IEAS 88 Query: 589 DKEGTVRAKR 618 DKEG AKR Sbjct: 89 DKEGLSPAKR 98
>TICN1_MOUSE (Q62288) Testican-1 precursor (SPOCK protein)| Length = 442 Score = 31.6 bits (70), Expect = 2.2 Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 12/125 (9%) Frame = +1 Query: 178 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC--- 345 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 83 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPC 142 Query: 346 --VQQCMRYGLNLXXXXXXXXIERPHVEEVEVDDQSNDSCDHKC------QHHKVPARKK 501 Q M G + +E N CD C + K A K Sbjct: 143 PVAQSAMVCGSDGHTYTSKCKLE---FHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKS 199 Query: 502 QCVDE 516 C D+ Sbjct: 200 ACTDK 204
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +1 Query: 424 EVEVDDQSNDSCDHKCQHHKVPARKKQCV-----DECHRREHHHPSRGGLREEV*PLERP 588 EV D N HK + HK ++ K+ D+ + +H H + R+EV ++ Sbjct: 30 EVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHKHKKHKRKEV--IDAS 87 Query: 589 DKEGTVRAKR 618 DKEG AKR Sbjct: 88 DKEGMSPAKR 97
>TICN1_HUMAN (Q08629) Testican-1 precursor (SPOCK protein)| Length = 439 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = +1 Query: 178 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC 345 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 80 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKC 136
>MACA1_RHOOP (O84992) Maleylacetate reductase 1 (EC 1.3.1.32) (Maleylacetate| reductase I) Length = 357 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -1 Query: 352 AARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRRRTVSSSPE--LYDV 212 AART L Y S TP LG+ G T R T++ PE +YDV Sbjct: 109 AARTGVDQVILPTTYAGSEVTPVLGETVEGRKTTRSTLAVLPETVIYDV 157
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = +1 Query: 193 SCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRY 366 +CD CQH+ P K+ C E SC+ +C R+ C QC +Y Sbjct: 45 NCDYNCQHYMECCPDFKRVCSPEL-----------SCKGRCFESFARGRECDCDSQCKQY 93 Query: 367 G 369 G Sbjct: 94 G 94
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Frame = +1 Query: 271 HHHPSRASCERKCS---HWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHVEEVEV 435 H HPSRA C R+ S W R+ C Y N ++R V V V Sbjct: 535 HRHPSRAPCPRRPSPRTAWITCRRRISTRIWCRIYSSNTAAVAATTTVQRGQVVRVRV 592 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,906,862 Number of Sequences: 219361 Number of extensions: 1592929 Number of successful extensions: 5167 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5151 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
