ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.32
3emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.32
4emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, comple... 40 4.9
5ref|NM_066804.2| Caenorhabditis elegans K03H1.5 (K03H1.5) mRNA, ... 40 4.9
6gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome... 40 4.9
7emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-8... 40 4.9
8emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chr... 40 4.9

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 10      gtagagatcggggacttcatccatca 35
               ||||||||||||||| ||||||||||
Sbjct: 2846127 gtagagatcggggacctcatccatca 2846102



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 10      gtagagatcggggacttcatccatca 35
               ||||||||||||||| ||||||||||
Sbjct: 2846071 gtagagatcggggacctcatccatca 2846046



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>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 10    gtagagatcggggacttcatccatca 35
             ||||||||||||||| ||||||||||
Sbjct: 24320 gtagagatcggggacctcatccatca 24345



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>emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, complete sequence
          Length = 34583

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   cgttgcattatgccaatgtt 156
             ||||||||||||||||||||
Sbjct: 12225 cgttgcattatgccaatgtt 12244



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>ref|NM_066804.2| Caenorhabditis elegans K03H1.5 (K03H1.5) mRNA, complete cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  cgttgcattatgccaatgtt 156
            ||||||||||||||||||||
Sbjct: 1534 cgttgcattatgccaatgtt 1553



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>gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome 9, complete sequence
          Length = 194303

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    taaaaactttggcattggca 186
              ||||||||||||||||||||
Sbjct: 134824 taaaaactttggcattggca 134843



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>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201587

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ggcggttcctcaaaatgctc 211
             ||||||||||||||||||||
Sbjct: 49367 ggcggttcctcaaaatgctc 49348



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>emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chromosome 4, complete
              sequence
          Length = 200933

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    gcagaggtgagagctgaaat 332
              ||||||||||||||||||||
Sbjct: 138961 gcagaggtgagagctgaaat 138942


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,274,883
Number of Sequences: 3902068
Number of extensions: 3274883
Number of successful extensions: 48438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48378
Number of HSP's gapped (non-prelim): 60
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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