ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 285 5e-74
2dbj|AK073946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 5e-74
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 285 5e-74
4emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388... 285 5e-74
5ref|NM_101567.2| Arabidopsis thaliana nucleic acid binding AT1G1... 42 1.4
6gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 geno... 42 1.4
7gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 42 1.4
8gb|AC165151.2| Mus musculus BAC clone RP24-77O15 from chromosome... 40 5.3
9gb|AE009129.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.3
10gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 5.3
11ref|XM_755548.1| Ustilago maydis 521 hypothetical protein (UM044... 40 5.3
12emb|AL590730.6| Human DNA sequence from clone RP11-92J19 on chro... 40 5.3
13gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.3
14gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, compl... 40 5.3
15gb|AF367637.1| Horatia klecakiana cytochrome c oxidase subunit I... 40 5.3
16ref|XM_624178.1| PREDICTED: Apis mellifera similar to RE72245p (... 40 5.3
17gb|AF240629.1|AF240629 Homo sapiens chromosome 21 map 21q21 clon... 40 5.3
18gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete seq... 40 5.3
19emb|AL049833.5|CNS0000D Human chromosome 14 DNA sequence BAC R-9... 40 5.3
20dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.3
21gb|AC171202.1| Mus musculus BAC clone RP24-288C12 from chromosom... 40 5.3
22gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 40 5.3
23gb|L12694.1|CHKEN1A01 Gallus gallus engrailed protein (En-1) gen... 40 5.3
24dbj|AP000957.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.3 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  285 bits (144), Expect = 5e-74
 Identities = 297/348 (85%)
 Strand = Plus / Minus

                                                                            
Query: 20       cgagcaggaacaggatgagcagcccacacttgtccaaaaggtgattgacatgcgagggcc 79
                ||||||||| ||||| |||||||| ||  |||| || |||||||| ||||||||||||||
Sbjct: 26159494 cgagcaggagcaggacgagcagcctacggttgtgcagaaggtgatcgacatgcgagggcc 26159435

                                                                            
Query: 80       tcaggctcgtgtgttgacagacttgaaggggttgagtactgaacatgagatggaggcaaa 139
                |||||| || ||| | || |||||||||||| | |     || || ||||||||||| ||
Sbjct: 26159434 tcaggcacgcgtgctaacggacttgaaggggctcaacgtggagcaggagatggaggcgaa 26159375

                                                                            
Query: 140      tgatgtgccaatgccggagttgcaatacaatgtgcggctgcttgttgatgagactgaggc 199
                 |||||||| ||||| |||||||||||||||||| |||||||||| |||||| |  ||||
Sbjct: 26159374 cgatgtgccgatgccagagttgcaatacaatgtgaggctgcttgtcgatgaggccaaggc 26159315

                                                                            
Query: 200      tgatattgtcaggttggatgggcagctgcgacgggagcaggagaaggtggctagtttggt 259
                ||||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 26159314 tgatattgtgaggctggatgggcagctgcgacgggagcaggagaaggtggcaagcttagt 26159255

                                                                            
Query: 260      gcgtgagaaggagaaagtagcaaagcaggaggctttgcagaaacaccagctgcaagttat 319
                ||| |||||||||||||| ||||| ||||||||||||||||||| ||| || ||||||||
Sbjct: 26159254 gcgggagaaggagaaagtggcaaaacaggaggctttgcagaaacgccaactacaagttat 26159195

                                                                
Query: 320      ggagacaattgcaaatgtgctggagaaggtccgggttgatgacactgc 367
                |||||  ||||||   ||||||||| ||||||| || ||||| |||||
Sbjct: 26159194 ggagaagattgcaggagtgctggagcaggtccgagtggatgatactgc 26159147
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>dbj|AK073946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N19, full
            insert sequence
          Length = 2778

 Score =  285 bits (144), Expect = 5e-74
 Identities = 297/348 (85%)
 Strand = Plus / Plus

                                                                        
Query: 20   cgagcaggaacaggatgagcagcccacacttgtccaaaaggtgattgacatgcgagggcc 79
            ||||||||| ||||| |||||||| ||  |||| || |||||||| ||||||||||||||
Sbjct: 905  cgagcaggagcaggacgagcagcctacggttgtgcagaaggtgatcgacatgcgagggcc 964

                                                                        
Query: 80   tcaggctcgtgtgttgacagacttgaaggggttgagtactgaacatgagatggaggcaaa 139
            |||||| || ||| | || |||||||||||| | |     || || ||||||||||| ||
Sbjct: 965  tcaggcacgcgtgctaacggacttgaaggggctcaacgtggagcaggagatggaggcgaa 1024

                                                                        
Query: 140  tgatgtgccaatgccggagttgcaatacaatgtgcggctgcttgttgatgagactgaggc 199
             |||||||| ||||| |||||||||||||||||| |||||||||| |||||| |  ||||
Sbjct: 1025 cgatgtgccgatgccagagttgcaatacaatgtgaggctgcttgtcgatgaggccaaggc 1084

                                                                        
Query: 200  tgatattgtcaggttggatgggcagctgcgacgggagcaggagaaggtggctagtttggt 259
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 1085 tgatattgtgaggctggatgggcagctgcgacgggagcaggagaaggtggcaagcttagt 1144

                                                                        
Query: 260  gcgtgagaaggagaaagtagcaaagcaggaggctttgcagaaacaccagctgcaagttat 319
            ||| |||||||||||||| ||||| ||||||||||||||||||| ||| || ||||||||
Sbjct: 1145 gcgggagaaggagaaagtggcaaaacaggaggctttgcagaaacgccaactacaagttat 1204

                                                            
Query: 320  ggagacaattgcaaatgtgctggagaaggtccgggttgatgacactgc 367
            |||||  ||||||   ||||||||| ||||||| || ||||| |||||
Sbjct: 1205 ggagaagattgcaggagtgctggagcaggtccgagtggatgatactgc 1252
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  285 bits (144), Expect = 5e-74
 Identities = 297/348 (85%)
 Strand = Plus / Minus

                                                                            
Query: 20       cgagcaggaacaggatgagcagcccacacttgtccaaaaggtgattgacatgcgagggcc 79
                ||||||||| ||||| |||||||| ||  |||| || |||||||| ||||||||||||||
Sbjct: 26087670 cgagcaggagcaggacgagcagcctacggttgtgcagaaggtgatcgacatgcgagggcc 26087611

                                                                            
Query: 80       tcaggctcgtgtgttgacagacttgaaggggttgagtactgaacatgagatggaggcaaa 139
                |||||| || ||| | || |||||||||||| | |     || || ||||||||||| ||
Sbjct: 26087610 tcaggcacgcgtgctaacggacttgaaggggctcaacgtggagcaggagatggaggcgaa 26087551

                                                                            
Query: 140      tgatgtgccaatgccggagttgcaatacaatgtgcggctgcttgttgatgagactgaggc 199
                 |||||||| ||||| |||||||||||||||||| |||||||||| |||||| |  ||||
Sbjct: 26087550 cgatgtgccgatgccagagttgcaatacaatgtgaggctgcttgtcgatgaggccaaggc 26087491

                                                                            
Query: 200      tgatattgtcaggttggatgggcagctgcgacgggagcaggagaaggtggctagtttggt 259
                ||||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 26087490 tgatattgtgaggctggatgggcagctgcgacgggagcaggagaaggtggcaagcttagt 26087431

                                                                            
Query: 260      gcgtgagaaggagaaagtagcaaagcaggaggctttgcagaaacaccagctgcaagttat 319
                ||| |||||||||||||| ||||| ||||||||||||||||||| ||| || ||||||||
Sbjct: 26087430 gcgggagaaggagaaagtggcaaaacaggaggctttgcagaaacgccaactacaagttat 26087371

                                                                
Query: 320      ggagacaattgcaaatgtgctggagaaggtccgggttgatgacactgc 367
                |||||  ||||||   ||||||||| ||||||| || ||||| |||||
Sbjct: 26087370 ggagaagattgcaggagtgctggagcaggtccgagtggatgatactgc 26087323
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>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144241

 Score =  285 bits (144), Expect = 5e-74
 Identities = 297/348 (85%)
 Strand = Plus / Minus

                                                                         
Query: 20    cgagcaggaacaggatgagcagcccacacttgtccaaaaggtgattgacatgcgagggcc 79
             ||||||||| ||||| |||||||| ||  |||| || |||||||| ||||||||||||||
Sbjct: 49732 cgagcaggagcaggacgagcagcctacggttgtgcagaaggtgatcgacatgcgagggcc 49673

                                                                         
Query: 80    tcaggctcgtgtgttgacagacttgaaggggttgagtactgaacatgagatggaggcaaa 139
             |||||| || ||| | || |||||||||||| | |     || || ||||||||||| ||
Sbjct: 49672 tcaggcacgcgtgctaacggacttgaaggggctcaacgtggagcaggagatggaggcgaa 49613

                                                                         
Query: 140   tgatgtgccaatgccggagttgcaatacaatgtgcggctgcttgttgatgagactgaggc 199
              |||||||| ||||| |||||||||||||||||| |||||||||| |||||| |  ||||
Sbjct: 49612 cgatgtgccgatgccagagttgcaatacaatgtgaggctgcttgtcgatgaggccaaggc 49553

                                                                         
Query: 200   tgatattgtcaggttggatgggcagctgcgacgggagcaggagaaggtggctagtttggt 259
             ||||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 49552 tgatattgtgaggctggatgggcagctgcgacgggagcaggagaaggtggcaagcttagt 49493

                                                                         
Query: 260   gcgtgagaaggagaaagtagcaaagcaggaggctttgcagaaacaccagctgcaagttat 319
             ||| |||||||||||||| ||||| ||||||||||||||||||| ||| || ||||||||
Sbjct: 49492 gcgggagaaggagaaagtggcaaaacaggaggctttgcagaaacgccaactacaagttat 49433

                                                             
Query: 320   ggagacaattgcaaatgtgctggagaaggtccgggttgatgacactgc 367
             |||||  ||||||   ||||||||| ||||||| || ||||| |||||
Sbjct: 49432 ggagaagattgcaggagtgctggagcaggtccgagtggatgatactgc 49385
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>ref|NM_101567.2| Arabidopsis thaliana nucleic acid binding AT1G17070 mRNA, complete
            cds
          Length = 2679

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  gatgtgccaatgccggagttgcaatacaa 169
            ||||| |||||||||||||||||| ||||
Sbjct: 1081 gatgttccaatgccggagttgcaacacaa 1109
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>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 141   gatgtgccaatgccggagttgcaatacaa 169
             ||||| |||||||||||||||||| ||||
Sbjct: 84767 gatgttccaatgccggagttgcaacacaa 84739
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
            sequence
          Length = 93677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  gatgtgccaatgccggagttgcaatacaa 169
            ||||| |||||||||||||||||| ||||
Sbjct: 8963 gatgttccaatgccggagttgcaacacaa 8935
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>gb|AC165151.2| Mus musculus BAC clone RP24-77O15 from chromosome 16, complete sequence
          Length = 177446

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   aggagaaagtagcaaagcag 287
             ||||||||||||||||||||
Sbjct: 11497 aggagaaagtagcaaagcag 11516
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>gb|AE009129.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 155
           of 256 of the complete sequence
          Length = 10232

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 18  gccgagcaggaacaggatgagcag 41
           ||||| ||||||||||||||||||
Sbjct: 496 gccgatcaggaacaggatgagcag 519
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    caattgcaaatgtgctggagaagg 348
              |||||| |||||||||||||||||
Sbjct: 834230 caattgtaaatgtgctggagaagg 834207
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>ref|XM_755548.1| Ustilago maydis 521 hypothetical protein (UM04494.1) partial mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 tgttgatgagactgaggctg 201
           ||||||||||||||||||||
Sbjct: 901 tgttgatgagactgaggctg 882
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>emb|AL590730.6| Human DNA sequence from clone RP11-92J19 on chromosome 10 Contains a
             NADH dehydrogenase 5 (MTND5) pseudogene, a pseudogene
             similar to part of NADH dehydrogenase 4 (MTND4), a novel
             gene and a novel protein similar to Pre-B cell enhancing
             factor (PBEF) (LOC283016) (probable pseudogene), complete
             sequence
          Length = 186300

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ggcaaatgatgtgccaatgc 153
             ||||||||||||||||||||
Sbjct: 91231 ggcaaatgatgtgccaatgc 91212
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 18      gccgagcaggaacaggatgagcag 41
               ||||| ||||||||||||||||||
Sbjct: 1711295 gccgatcaggaacaggatgagcag 1711318
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>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence
          Length = 164550

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    agaaagtagcaaagcaggag 290
              ||||||||||||||||||||
Sbjct: 134387 agaaagtagcaaagcaggag 134406
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>gb|AF367637.1| Horatia klecakiana cytochrome c oxidase subunit I (COI) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 aaagtagcaaagcaggaggc 292
           ||||||||||||||||||||
Sbjct: 277 aaagtagcaaagcaggaggc 258
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>ref|XM_624178.1| PREDICTED: Apis mellifera similar to RE72245p (LOC551793), partial
           mRNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 attgcaaatgtgctggagaa 346
           ||||||||||||||||||||
Sbjct: 593 attgcaaatgtgctggagaa 612
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>gb|AF240629.1|AF240629 Homo sapiens chromosome 21 map 21q21 clone B47C12, complete sequence
          Length = 151696

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tggaggcaaatgatgtgcca 149
             ||||||||||||||||||||
Sbjct: 56820 tggaggcaaatgatgtgcca 56801
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>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence
          Length = 153357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    caattgcaaatgtgctggagaagg 348
              |||||| |||||||||||||||||
Sbjct: 137236 caattgtaaatgtgctggagaagg 137213
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>emb|AL049833.5|CNS0000D Human chromosome 14 DNA sequence BAC R-907D1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 203266

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ggaacaggatgagcagccca 45
             ||||||||||||||||||||
Sbjct: 96559 ggaacaggatgagcagccca 96578
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>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tggaggcaaatgatgtgcca 149
              ||||||||||||||||||||
Sbjct: 242710 tggaggcaaatgatgtgcca 242691
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>gb|AC171202.1| Mus musculus BAC clone RP24-288C12 from chromosome 16, complete sequence
          Length = 194527

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    aggagaaagtagcaaagcag 287
              ||||||||||||||||||||
Sbjct: 181496 aggagaaagtagcaaagcag 181515
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>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tgtgccaatgccggagttgc 162
             ||||||||||||||||||||
Sbjct: 71178 tgtgccaatgccggagttgc 71197
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>gb|L12694.1|CHKEN1A01 Gallus gallus engrailed protein (En-1) gene, 5' end
          Length = 688

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 agctgcgacgggagcaggag 242
           ||||||||||||||||||||
Sbjct: 273 agctgcgacgggagcaggag 292
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>dbj|AP000957.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B781M3,
             LL56-APP region, complete sequence
          Length = 190937

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tggaggcaaatgatgtgcca 149
             ||||||||||||||||||||
Sbjct: 14799 tggaggcaaatgatgtgcca 14780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,443,813
Number of Sequences: 3902068
Number of extensions: 3443813
Number of successful extensions: 71867
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71792
Number of HSP's gapped (non-prelim): 75
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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