Clone Information

BLAST Search Result

Clone Name	basd3g24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	165	1e-41
2	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	85	2e-16
3	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	85	2e-16
4	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	85	2e-16
5	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	84	3e-16
6	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	83	5e-16
7	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	83	6e-16
8	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	79	9e-15
9	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	79	1e-14
10	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	79	1e-14
11	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	78	2e-14
12	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	69	7e-12
13	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	69	9e-12
14	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	67	5e-11
15	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	59	9e-09
16	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	59	1e-08
17	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	41	0.003
18	LARK_DROME (Q94901) RNA-binding protein lark	38	0.017
19	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	37	0.038
20	RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"	36	0.066
21	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	35	0.11
22	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	35	0.15
23	SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr...	34	0.25
24	SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr...	34	0.25
25	RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w...	34	0.33
26	NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3	33	0.56
27	RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated w...	33	0.73
28	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	32	1.2
29	UL24_HHV6Z (P52545) Protein U49	31	2.1
30	IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R...	31	2.8
31	HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (...	31	2.8
32	HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1...	31	2.8
33	HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1...	31	2.8
34	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	31	2.8
35	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	30	3.6
36	DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-depen...	30	3.6
37	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	30	3.6
38	YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ...	30	3.6
39	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	30	3.6
40	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	30	4.7
41	RECA_MYCMY (P42446) Protein recA (Recombinase A)	30	4.7
42	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	30	4.7
43	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	30	4.7
44	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	30	6.1
45	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	29	8.0
46	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	29	8.0
47	KAPR_CANAL (Q9HEW1) cAMP-dependent protein kinase regulatory sub...	29	8.0
48	ATPG_PSYAR (Q4FQ36) ATP synthase gamma chain (EC 3.6.3.14) (ATP ...	29	8.0
49	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	29	8.0

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  165 bits (418), Expect(2) = 1e-41
 Identities = 77/99 (77%), Positives = 88/99 (88%)
 Frame = +2

Query: 221 MGQAAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLR 400
           M   + IAAAFGG LPPG+TGTNDRCT++VSNLN+D ID DKLFNLFS+YGNIVRIK+LR
Sbjct: 220 MANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLR 279

Query: 401 NKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 517
           NKPDHALVQM DG Q ELA+H+LKGAML G++LEVNFSK
Sbjct: 280 NKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSK 318



 Score = 24.3 bits (51), Expect(2) = 1e-41
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 520 PSITPAPDAHDY 555
           P+ITP  D+HDY
Sbjct: 320 PNITPGTDSHDY 331

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 44/102 (43%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PGV+   +   L+VSNLN + +    LF LF +YG++ R+K+L NK 
Sbjct: 317 AAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKK 375

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           D AL+QMADG Q++LA+++L G  + G+ + V  SK + + L
Sbjct: 376 DSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQL 417

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 44/102 (43%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PGV+   +   L+VSNLN + +    LF LF +YG++ R+K+L NK 
Sbjct: 317 AAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKK 375

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           D AL+QMADG Q++LA+++L G  + G+ + V  SK + + L
Sbjct: 376 DSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQL 417

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 44/102 (43%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PGV+   +   L+VSNLN + +    LF LF +YG++ R+K+L NK 
Sbjct: 317 AAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKK 375

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           D AL+QMADG Q++LA+++L G  + G+ + V  SK + + L
Sbjct: 376 DSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQL 417

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 45/102 (44%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PG+ G  +   L+VSNLN +++    LF LF +YG++ R+KVL NK 
Sbjct: 316 AAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKK 374

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           ++ALVQMADG Q +LA+ +L G  L G+ + +  SK + + L
Sbjct: 375 ENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQL 416

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 44/102 (43%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PG+ G  +   L+VSNLN +++    LF LF +YG++ R+K+L NK 
Sbjct: 316 AAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK 374

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           ++ALVQMADG Q +LA+ +L G  L G+ + +  SK + + L
Sbjct: 375 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL 416

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 43/102 (42%), Positives = 65/102 (63%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PG+ G  +   L+VSNLN +++    LF LF +YG++ R+K+L NK 
Sbjct: 340 AAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK 398

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           ++ALV+MADG Q +LA+ +L G  L G+ + +  SK + + L
Sbjct: 399 ENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQL 440

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 43/102 (42%), Positives = 64/102 (62%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           AA  AAA G    PG+ G  +   L+VSNLN +++    LF LF +Y ++ R+K+L NK 
Sbjct: 342 AAARAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKK 400

Query: 410 DHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
           ++ALVQMADG Q +LA+ +L G  L G+ + +  SK + + L
Sbjct: 401 ENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQL 442

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
 Frame = +2

Query: 221 MGQAAVIAAAFGGTLP-PGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL 397
           +G   + ++A  G +  PG +G      L+V+NLN D I    LF LF +YG++ R+K++
Sbjct: 301 LGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIM 360

Query: 398 RNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
            NK ++ALVQMAD  Q +LA+++L G  L G+ L    SK + + L
Sbjct: 361 FNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQL 406

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
 Frame = +2

Query: 221 MGQAAVIAAAFGGTLP-PGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL 397
           +G   + ++A  G +  PG +G      L+V+NLN D I    LF LF +YG++ R+K++
Sbjct: 303 LGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIM 362

Query: 398 RNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
            NK ++ALVQMAD  Q +LA+++L G  L G+ L    SK + + L
Sbjct: 363 FNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQL 408

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
 Frame = +2

Query: 221 MGQAAVIAAAFGGTLP-PGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL 397
           +G   + ++A  G +  PG +G      L+V+NLN D I    LF LF +YG++ R+K++
Sbjct: 303 LGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIM 362

Query: 398 RNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLPL 535
            NK ++ALVQMAD  Q ++A+++L G  L G+ L    SK + + L
Sbjct: 363 FNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQL 408

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 33/84 (39%), Positives = 52/84 (61%)
 Frame = +2

Query: 266 PPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQ 445
           PP      D   L+V  L+  K++ D++FN+F +YGN+ ++K +++KP  A+V+MADG  
Sbjct: 341 PPEYGPHADSPVLMVYGLDQSKMNGDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 400

Query: 446 TELAIHYLKGAMLLGQKLEVNFSK 517
            + AI +L    + GQKL V  SK
Sbjct: 401 VDRAITHLNNNFMFGQKLNVCVSK 424

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 32/84 (38%), Positives = 52/84 (61%)
 Frame = +2

Query: 266 PPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQ 445
           PP      D   L+V  L+  K++ D++FN+F +YGN+ ++K +++KP  A+V+MADG  
Sbjct: 338 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 397

Query: 446 TELAIHYLKGAMLLGQKLEVNFSK 517
            + AI +L    + GQK+ V  SK
Sbjct: 398 VDRAITHLNNNFMFGQKMNVCVSK 421

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 34/75 (45%), Positives = 49/75 (65%)
 Frame = +2

Query: 230 AAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP 409
           +A  AAA      PG+ G  +   L+VSNLN +++    LF LF +YG++ R+K+L NK 
Sbjct: 314 SAAAAAAASRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK 372

Query: 410 DHALVQMADGLQTEL 454
           ++ALVQMADG Q +L
Sbjct: 373 ENALVQMADGSQAQL 387

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 29/79 (36%), Positives = 47/79 (59%)
 Frame = +2

Query: 281 GTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAI 460
           G+     ++VS L+  K++  ++FNLF +YGNI ++K ++  P  ALV+M D    E A+
Sbjct: 379 GSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAV 438

Query: 461 HYLKGAMLLGQKLEVNFSK 517
            +L    L G++L V  SK
Sbjct: 439 THLNNVKLFGKRLNVCVSK 457

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 46/79 (58%)
 Frame = +2

Query: 281 GTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAI 460
           G      ++VS L+  K++  ++FNLF +YGNI ++K ++  P  ALV+M D    E A+
Sbjct: 330 GNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAV 389

Query: 461 HYLKGAMLLGQKLEVNFSK 517
            +L    L G++L V  SK
Sbjct: 390 THLNNVKLFGKRLNVCVSK 408

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/72 (36%), Positives = 35/72 (48%)
 Frame = +2

Query: 308 VSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLL 487
           V NL +DK+  D L   F+ YG +  + +  N P  A V+       E A   L G+ LL
Sbjct: 11  VGNL-TDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELL 69

Query: 488 GQKLEVNFSKSR 523
           G +L V  SK R
Sbjct: 70  GSQLRVEISKGR 81

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 32/106 (30%), Positives = 48/106 (45%)
 Frame = +2

Query: 215 YLMGQAAVIAAAFGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKV 394
           Y + + A+   A      P    T     + V NL +DK  A ++  LF  YG +V   +
Sbjct: 63  YTLNEFAIKVEAAKSRRAPNTPTTK----IFVGNL-TDKTRAPEVRELFQKYGTVVECDI 117

Query: 395 LRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKSRVLP 532
           +RN   +  V +      + AI  L G ++ GQ L+V  S SRV P
Sbjct: 118 VRN---YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRP 160

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +2

Query: 296 CTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNK-PDHALVQMADGL-------QTE 451
           CTL + NLN D  + +KL  +FS  G +    + + K     L+ M  G        Q +
Sbjct: 730 CTLFIKNLNFDTTE-EKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQ 788

Query: 452 LAIHYLKGAMLLGQKLEVNFSKSRVLPLLLM 544
            A+  L+G ++ G KLEV  S+    P + +
Sbjct: 789 KALKQLQGHVVDGHKLEVRISERATKPAVTL 819

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>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
 Frame = +2

Query: 299 TLIVSNLNSDKIDADKL----FNLFSIYGNIVRIKVLRNKP--DHALVQMADGLQTELAI 460
           TL V+NLN DKI+ + L    + LFS YG +V I  L+       A V   D     +A+
Sbjct: 5   TLYVNNLN-DKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63

Query: 461 HYLKGAMLLGQKLEVNF--SKSRVL 529
             LK  +  G+++++ +  SKS+++
Sbjct: 64  KALKNFIFFGKEMKIQYAHSKSKII 88

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>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 281 GTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAI 460
           G +    + V NL +      +L   FS YG +  + + RN P  A V+  D    E A+
Sbjct: 35  GGDSETKVYVGNLGTGA-GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93

Query: 461 HYLKGAMLLGQKLEVNFS 514
             L G ++ G ++ V  S
Sbjct: 94  RGLDGKVICGSRVRVELS 111

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>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 344 KLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFS 514
           +L   FS YG +  + + RN P  A V+  D    E A+  L G ++ G ++ V  S
Sbjct: 26  ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82

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>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20) (X16 protein)
          Length = 164

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +2

Query: 296 CTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKG 475
           C + V NL ++  +  +L   F  YG +  + V RN P  A V+  D      A+  L G
Sbjct: 10  CKVYVGNLGNNG-NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68

Query: 476 AMLLGQKLEVNFS 514
             L G ++ V  S
Sbjct: 69  RTLCGCRVRVELS 81

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>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20)
          Length = 164

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +2

Query: 296 CTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKG 475
           C + V NL ++  +  +L   F  YG +  + V RN P  A V+  D      A+  L G
Sbjct: 10  CKVYVGNLGNNG-NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68

Query: 476 AMLLGQKLEVNFS 514
             L G ++ V  S
Sbjct: 69  RTLCGCRVRVELS 81

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>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow protein) (Maternally expressed hnRNP C-related
           protein)
          Length = 312

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +2

Query: 275 VTGTND----RCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGL 442
           VT  ND       + + NLN+  +    +  +FS YG +    V +    +A VQ A+  
Sbjct: 10  VTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKG---YAFVQYANER 66

Query: 443 QTELAIHYLKGAMLLGQKLEVNFS 514
               A+    G +L GQ L++N +
Sbjct: 67  HARAAVLGENGRVLAGQTLDINMA 90

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>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3|
          Length = 802

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           L + NL    +  + LF +FS YG+I++I +   K     +Q  +      AI      M
Sbjct: 332 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEM 388

Query: 482 LLGQKLEVNFSKSRVLP 532
             G+KL +  S S   P
Sbjct: 389 NFGKKLILEVSSSNARP 405

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>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow homolog) (Autoantigen p542)
          Length = 306

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +2

Query: 275 VTGTND----RCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGL 442
           VT  ND       + + NLN+  +    +  +FS YG +    V +    +A VQ ++  
Sbjct: 10  VTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKG---YAFVQYSNER 66

Query: 443 QTELAIHYLKGAMLLGQKLEVNFS 514
               A+    G +L GQ L++N +
Sbjct: 67  HARAAVLGENGRVLAGQTLDINMA 90

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           + V NL S    A+++ +LFS YG I    +++N      V M    + + AI  L   M
Sbjct: 4   IFVGNL-SPNTTAEEIRSLFSQYGKISECDIVKN---FGFVHMDSKSEADEAIQNLHHYM 59

Query: 482 LLGQKLEVNFSKSRVLPLLLMHM 550
           L G  + V  SK +      +H+
Sbjct: 60  LNGMAMNVEMSKGKPKTSTKLHV 82

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>UL24_HHV6Z (P52545) Protein U49|
          Length = 252

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 165 LFREAQNEAVKTTSPISKYRSFYGL---HTDVYRVR-TKISKRHIFRNGGSNRQSA 10
           LF  +Q+ AV++   I  Y +F      HTD+YR R  K SK  + +  G NR  A
Sbjct: 173 LFARSQDGAVQSLLSIPNYTNFRRACQKHTDLYRRRYQKASKSVLTKTSGENRSRA 228

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>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 287 NDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDH-----ALVQMADGLQTE 451
           +D CTL +  +N +  +      L   +  I R+ V+RNK        A V  +     E
Sbjct: 188 DDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAE 247

Query: 452 LAIHYLKGAMLLGQKLEVNFSKSRV 526
            A+ +L G   +   L V +SK +V
Sbjct: 248 QALRFLDGRGYMNLILRVEWSKPKV 272

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>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core|
           protein C)
          Length = 282

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           + + NLN+  +    +  +FS YG IV   V +     A VQ ++      A+    G M
Sbjct: 19  VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKG---FAFVQFSNERTARTAVAGEDGRM 75

Query: 482 LLGQKLEVNFS 514
           + GQ L++N +
Sbjct: 76  IAGQVLDINLA 86

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>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /|
           hnRNP C2)
          Length = 306

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           + + NLN+  +    +  +FS YG IV   V +     A VQ  +      A+    G M
Sbjct: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG---FAFVQYVNERNARAAVAGEDGRM 74

Query: 482 LLGQKLEVNFS 514
           + GQ L++N +
Sbjct: 75  IAGQVLDINLA 85

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>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /|
           hnRNP C2)
          Length = 313

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           + + NLN+  +    +  +FS YG IV   V +     A VQ  +      A+    G M
Sbjct: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG---FAFVQYVNERNARAAVAGEDGRM 74

Query: 482 LLGQKLEVNFS 514
           + GQ L++N +
Sbjct: 75  IAGQVLDINLA 85

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>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +2

Query: 266 PPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL---RNKPDHALVQMAD 436
           P   +G +    L VSN+     D D L  +F  +G +  ++++   R       V M  
Sbjct: 143 PSTSSGPDGPKRLHVSNIPFRFRDPD-LKTMFEKFGVVSDVEIIFNERGSKGFGFVTMER 201

Query: 437 GLQTELAIHYLKGAMLLGQKLEVNFSKSRV 526
               E A   L G+M+ G+K+EVN + +RV
Sbjct: 202 PQDAERARQELHGSMIEGRKIEVNCATARV 231

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>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 308 VSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPD-----HALVQMADGLQTELAIHYLK 472
           VS L+S     D L NLFS YG +V  KV+ N        +  V M+   +    I++L 
Sbjct: 432 VSGLSSTTRATD-LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490

Query: 473 GAMLLGQKLEVNFSKS 520
              L G+ + V  +KS
Sbjct: 491 KTELHGKMISVEKAKS 506

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>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 729

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAM 481
           +I+   +   +  D LF L          +VLRN+PD  LV M+  L+ E    Y  GA 
Sbjct: 188 IILDEAHERTLATDVLFGLLK--------EVLRNRPDLKLVVMSATLEAEKFQEYFSGAP 239

Query: 482 LL 487
           L+
Sbjct: 240 LM 241

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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +2

Query: 272 GVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPD-----HALVQMAD 436
           G  G+     L VS L+S     D L NLFS YG +V  KV+ N        +  V M+ 
Sbjct: 399 GRVGSGSGRNLWVSGLSSTTRATD-LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMST 457

Query: 437 GLQTELAIHYLKGAMLLGQKLEVNFSKS 520
             +    I +L    L G+ + V  +K+
Sbjct: 458 SDEATKCISHLHRTELHGRMISVEKAKN 485

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>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
 Frame = +2

Query: 257 GTLPPGVTGTNDR-----CTLIVS---NLNSDKIDADKLFNLFSIYGNIVRIKVLR---N 403
           GT+    T T  R     C  + S    L+ D++      N F  YG++ R+KVLR   N
Sbjct: 76  GTVTTTSTSTESRGRPSSCIFVASLAAALSDDELCLSVTEN-FKKYGDLARVKVLRDNAN 134

Query: 404 KPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 517
           +P +A VQ  +    + A+   +G +L G++L    +K
Sbjct: 135 RP-YAFVQYNNDHDAKHALIRAQGTLLNGRRLRCEPAK 171

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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRN 403
           L + NL+ D +D +KL  +FS YGN+   KV+ N
Sbjct: 334 LYLKNLD-DSVDDEKLKEMFSEYGNVTSSKVMLN 366

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>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL---RNKPDHALVQMADGLQTELAIHYLK 472
           L VSN+     D D L  +F  +G I+ ++++   R       V   +    + A   L 
Sbjct: 118 LHVSNIPFRFRDPD-LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176

Query: 473 GAMLLGQKLEVNFSKSRVL 529
           G ++ G+K+EVN + +RV+
Sbjct: 177 GTVVEGRKIEVNNATARVM 195

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>RECA_MYCMY (P42446) Protein recA (Recombinase A)|
          Length = 345

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 278 TGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQMADGLQTELA 457
           T T  +     S++  +   A+ + N + I GN ++IKV++NK             T ++
Sbjct: 223 TTTGGKALKFFSSIRLEVRKAENILNNYEIIGNKIKIKVVKNK------TAIPFKTTTIS 276

Query: 458 IHYLKGAMLLGQKLEV 505
           + Y KG   LG+ +++
Sbjct: 277 LLYNKGIDKLGELVDL 292

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>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL---RNKPDHALVQMADGLQTELAIHYLK 472
           L VSN+     D D L  +F  +G I+ ++++   R       V   +    + A   L 
Sbjct: 123 LHVSNIPFRFRDPD-LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181

Query: 473 GAMLLGQKLEVNFSKSRVL 529
           G ++ G+K+EVN + +RV+
Sbjct: 182 GTVVEGRKIEVNNATARVM 200

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>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVL---RNKPDHALVQMADGLQTELAIHYLK 472
           L VSN+     D D L  +F  +G I+ ++++   R       V   +    + A   L 
Sbjct: 119 LHVSNIPFRFRDPD-LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177

Query: 473 GAMLLGQKLEVNFSKSRVL 529
           G ++ G+K+EVN + +RV+
Sbjct: 178 GTVVEGRKIEVNNATARVM 196

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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKP----DHALVQMADGLQTELAIHYL 469
           L + NL+ D ++ +KL  +FS YGN+   KV+ N          V  ++  +  LA+  +
Sbjct: 330 LYLKNLD-DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388

Query: 470 KGAMLLGQKLEVNFSKSR 523
            G M+  + L V  ++ +
Sbjct: 389 NGKMIGRKPLYVALAQRK 406

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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 302 LIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNK 406
           L V NL+ D ID D+L   FS YGNI   KV+ ++
Sbjct: 289 LYVKNLD-DTIDDDRLRIAFSPYGNITSAKVMTDE 322

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>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
 Frame = +2

Query: 290 DRCTLIVSNLN--SDKIDADKLFNLFSIYGNIVRIKVLRNKPD-----------HALVQM 430
           D  T+ V NLN  + + +  K+F     Y + V    +R KPD              V+ 
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAV----IRAKPDPKRPGKYLSMGFGFVEF 672

Query: 431 ADGLQTELAIHYLKGAMLLGQKLEVNFSKSRV 526
            D      A+H + G +L G KLE+  S   V
Sbjct: 673 KDKASAVAAMHAMNGFVLDGHKLEIKLSHQGV 704

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>KAPR_CANAL (Q9HEW1) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit) (PKA-R)
          Length = 459

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
 Frame = +2

Query: 137 TASFCASLNNISISHVAFTYAATMFLYLMGQAAVIAAAFGGTLPPGVTGTNDRCTLIVSN 316
           T  F  +   +S S    ++     +Y   +AA   AA             D     +  
Sbjct: 264 TVDFYVNDAKVSSSSEGSSFGELALMYNSPRAATAVAA------------TDVVCWALDR 311

Query: 317 LNSDKIDADKLFNLFSIYGNIVR-IKVLRNKPDHALVQMADGLQTELAIHYLKG 475
           L   +I  +  FN   +Y + ++ I+VL++  DHA  ++AD L TE+   Y KG
Sbjct: 312 LTFRRILLEGTFNKRLMYEDFLKDIEVLKSLSDHARSKLADALSTEM---YHKG 362

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>ATPG_PSYAR (Q4FQ36) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 293

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
 Frame = +2

Query: 251 FGGTLPPGVTGTNDRCTL---------IVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRN 403
           FGG +   VT   D+ T          ++ + ++ KID  +++ +++ + N +  K   N
Sbjct: 129 FGGKVTSAVTDYGDKPTFEQLNSPVQAMLEDYSNGKID--RIYVVYNKFVNAMTQKPTIN 186

Query: 404 K----PDHALVQMADGLQTELAIHYL 469
           +    PD A  +   G+QTEL+  Y+
Sbjct: 187 QLVPLPDSAFAEEESGIQTELSWDYI 212

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>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 308 VSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPD-----HALVQMADGLQTELAIHYLK 472
           VS L+S     D L NLFS YG +V  KV+ N        +  V M+   +    I++L 
Sbjct: 410 VSGLSSTTRATD-LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query: 473 GAMLLGQKLEVNFSKS 520
              L G+ + V  +K+
Sbjct: 469 KTELHGKMISVEKAKN 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,364,757
Number of Sequences: 219361
Number of extensions: 1561438
Number of successful extensions: 4306
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 4208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4300
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result