ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BSPB_POPDE (Q09117) Bark storage protein B precursor 48 8e-06
2BSPA_POPDE (Q07469) Bark storage protein A precursor 47 1e-05
3Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor 33 0.28
4SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-dete... 29 3.1
5NCKX_DROME (Q9U6A0) Sodium/potassium/calcium exchanger (Na(+)/K(... 29 4.0
6KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier fami... 28 9.0

>BSPB_POPDE (Q09117) Bark storage protein B precursor|
          Length = 312

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +3

Query: 3   NMDIQGRXFXFGTIXGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWG 155
           ++DI GR F  GT+ G S+V V TG   +N   T Q+LL+ F + G++++G
Sbjct: 56  SVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMATTLQILLARFSIHGVIYFG 106



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>BSPA_POPDE (Q07469) Bark storage protein A precursor|
          Length = 312

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +3

Query: 3   NMDIQGRXFXFGTIXGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWG 155
           ++DI GR F  GT+ G S+V V TG   +N   T Q+LL  F + G++++G
Sbjct: 56  SVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYFG 106



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>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor|
          Length = 246

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 21  RXFXFGTIXGQSVVMVMTGLSMLNAGLTTQMLLSLF 128
           R +  G+I G+ V++ MTG+ ++NA  TT+   + F
Sbjct: 69  RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARF 104



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>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   HGHPRAXVSLWNHXRPKRRHGHDRTEHAQRWSDHP 109
           H H +    L NH   +++  HD  +  Q++ DHP
Sbjct: 206 HDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240



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>NCKX_DROME (Q9U6A0) Sodium/potassium/calcium exchanger|
           (Na(+)/K(+)/Ca(2+)-exchange protein)
          Length = 856

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 143 DALHPEQAQQHLGGQTSVEHAQSCHDHDDALAXDGSKXKXSPLD 12
           DA  P  A+QH GG  S    Q+  +H+D L   G+  + S  D
Sbjct: 214 DAAKPRPAKQHFGGSNSNSPNQN-QNHNDVLGGVGAPSQTSGED 256



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>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 476

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   HGHPRAXVSLWNHXRPKRRHGHDRTE-HAQRWSDHPDAAEPVPGEGH 142
           HGH     S+W+       HGH R E H      H   +    G GH
Sbjct: 69  HGHGHTHESIWHGHAHSHDHGHSREELHHGHSHGHSHDSLHHGGHGH 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,821,785
Number of Sequences: 219361
Number of extensions: 313860
Number of successful extensions: 1253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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