>STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homolog (EC|
           2.7.11.1)
          Length = 1230

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
 Frame = +2

Query: 134 RVLEQLSFPPLQDQDIPDARMDAIPY--ETSFPPVSEQQSRYALALNQSSRGSARLGDES 307
           R+L        + Q  P A MD + +  +TS  P      ++    N+SS  S+   +E+
Sbjct: 504 RLLSASGITKKEQQQHPQAVMDIVAFYQDTSENPDDAAFKKFHFDNNKSS--SSGWSNEN 561

Query: 308 LFPPLPGSSNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARS-----QTAENPE 472
             P  PG SN GS S   G  S    T  S + +++    KV+  ++S     ++ ++  
Sbjct: 562 TPPATPGGSNSGSGSGGGGAPSSPHRTPPSSIIEKNNVEQKVITPSQSMPTKTESKQSEN 621

Query: 473 IVPHVSTSTQTWPK 514
             PH   +TQ  P+
Sbjct: 622 QHPHEDNATQYTPR 635

>PAPOA_HUMAN (P51003) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)|
           (Polynucleotide adenylyltransferase alpha)
          Length = 744

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 260 ALNQSSRGSARLGDESLFPPLPGSSNK----GSASTQQGLQSLAKNTLASRLQ--QRSKG 421
           ALN SS   +   D S+  P P S+ K     S+ + QG  S A    A+ +   Q ++ 
Sbjct: 516 ALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEV 575

Query: 422 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDNGLMPSA 601
           +V  + S+ S    + E +P  +T     P P   +    SS  R+V    R +G   +A
Sbjct: 576 SVPQVNSSESSGGTSSESIPQTATQPAISPPPKPTVSRVVSS-TRLVNPPPRSSG--NAA 632

Query: 602 SSGSA 616
           +SG+A
Sbjct: 633 TSGNA 637

>PAPOA_MOUSE (Q61183) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)|
           (Polynucleotide adenylyltransferase)
          Length = 738

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
 Frame = +2

Query: 260 ALNQSSRGSARLGDESLFPPLPGSSNK----GSASTQQGLQSLAKNTLASRLQ--QRSKG 421
           ALN SS   +   D S+  P P S+ K     S+ + QG  S A    A+ +   Q S+ 
Sbjct: 516 ALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEV 575

Query: 422 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDNG 586
           +V    S+ S    + E +P  +T     P P   +    SS  R+V  S R +G
Sbjct: 576 SVPQANSSESPGGPSSESIPQTATQPAISPPPKPTVSRVVSS-TRLVNPSPRPSG 629

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
 Frame = +2

Query: 233  SEQQSRYALALNQSSRGSARLGDESLFPPLPGSSNKGSASTQQ----GLQSLAKNTLASR 400
            +E Q++  L   Q++ G  +    S      G++++   + QQ    GLQ   +    +R
Sbjct: 3738 AEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQAR 3797

Query: 401  LQQRSKGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRD 580
            LQQ+S+ T +    A SQ A  P+  P  +T  Q    P +    +GS       Q  R 
Sbjct: 3798 LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQP-AGPPRAEQTNGSKGTAKAPQQGRA 3856

Query: 581  NGLMPSASSGSA 616
                P+   G A
Sbjct: 3857 PQAQPTPGPGPA 3868

>SWP82_YEAST (P43554) SWI/SNF global transcription activator complex component|
           SWP82
          Length = 623

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 317 PLPGSSNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARSQTAENPEIVPHVSTS 496
           PL  + N G     +GL    KNTL  RL+Q +   +K L         N  +       
Sbjct: 430 PLKSAENSGKQQYYRGLPLYEKNTLLERLKQLTPNEIKELEHLHDAVFVNTGLQNVRKVR 489

Query: 497 TQTWPK 514
           T+ W K
Sbjct: 490 TKKWKK 495

>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)|
          Length = 619

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +2

Query: 224 PPVSEQQSRYALALNQ------SSRGSARLGDESLFPPLPGSSNKGSASTQQGLQSLAKN 385
           PPV+  QS +  +L+        S  S   G  + FP  P SS+ GSA T   +Q     
Sbjct: 270 PPVAGNQSLFHSSLSHLGPQLLPSGPSTSSGASASFPSGPSSSSPGSAPTTVPVQM---- 325

Query: 386 TLASRLQQRSKGTVKVL 436
             ASR+QQ   G   VL
Sbjct: 326 PKASRVQQALAGMTSVL 342

>ATL4K_ARATH (Q940Q4) RING-H2 finger protein ATL4K (RING-H2 finger protein|
           ATL13)
          Length = 472

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 29/105 (27%)
 Frame = +2

Query: 422 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQST--------- 574
           T+KV  S + Q+++N  +  H +  ++    P   L  SGS  +RIV ++          
Sbjct: 315 TLKVHVSTKKQSSKNRGLPGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEKNVVERES 374

Query: 575 --------------------RDNGLMPSASSGSAWNSRASNKMKH 649
                               +++  + S+SSG A++ R SN+  H
Sbjct: 375 FSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNH 419

>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2514

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
 Frame = +2

Query: 137  VLEQLSFPPLQDQDIPDARMDAIPYETSFPPVSEQQS----RYALALNQSSRGSARLGDE 304
            V EQ + PP QD++ P+A        T  PP ++  S      +L ++ SS G       
Sbjct: 1675 VPEQPAAPPAQDEEAPEA------VATPAPPAADNTSLDVTDISLDMDDSSEG------- 1721

Query: 305  SLFPPLPGSSNKGSASTQ--QGLQSLAKNTLA---------------SRLQQRSKGTVKV 433
            SLF    GS N  +   +   G  SL +  +                 RL++ ++     
Sbjct: 1722 SLFSSFSGSDNSITCMDRWSSGPSSLDRRQVVVADVHAVQEPAPIPPPRLKKMAR----- 1776

Query: 434  LYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLS 538
              +A S+T E P  +P  STS+      D+ LHLS
Sbjct: 1777 -LAAASKTQEEP--IPPASTSS-----ADESLHLS 1803

>UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 37)
           (Ubiquitin-specific-processing protease 37)
           (Deubiquitinating enzyme 37)
          Length = 979

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
 Frame = +2

Query: 266 NQSS--RGSARLGDESLFPPLPGSSNKGSASTQQG------LQSLAKNT--LASRLQQRS 415
           NQ+S  RGS    D+  F  + G+  +GS  T  G      + SL   +  L S L +  
Sbjct: 142 NQASAKRGSLETKDDIPFRKVLGNPGRGSIKTVAGSGIARTIPSLTSTSTPLRSGLLENR 201

Query: 416 KGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQG-LHLSGSSQLRI-VTQSTRDNGL 589
               K + S  S+  E+       S++ +    P +  L  S   QL +  ++  R +GL
Sbjct: 202 TEKRKRMISTGSELNEDYPKEDGSSSNNKAMTDPSRKYLTSSREKQLSLKQSEENRTSGL 261

Query: 590 MPSASSGSAWNSRASNKMKHSTSTPN 667
           +P  SS S + SRA +K +HS+   N
Sbjct: 262 LPLQSS-SFYGSRAGSK-EHSSGGTN 285

>HXA10_HETFR (Q9IA27) Homeobox protein Hox-A10|
          Length = 271

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
 Frame = +2

Query: 218 SFPPVSEQQSRYALALNQSSRGSARLGDESLFPPLPGSSNKGSASTQQGLQSLAKNTLAS 397
           SFP   ++++ Y L  ++    SA   D S FP L   S   + +T  G   +      S
Sbjct: 28  SFPQNIKEENAYCLYDSEKCPKSAAATDLSTFPRLTSESCSNNDTTTSGGVPVPGYFRLS 87

Query: 398 RLQQRSKGTVKVLYSARSQTAENPEIVPH-----------VSTSTQTWPKPDQGL---HL 535
           +    SK T   LYS   Q   +P  VP             ST T+   K  +G    HL
Sbjct: 88  QAYPTSKQT---LYSNTGQVGASP-FVPQSQIRFGTPPSSASTPTELGRKGSEGTSPGHL 143

Query: 536 SGSSQLR----IVTQSTRDNGLMPSASSGSAWNSRASNKMK 646
           + SS+        + +  ++  +PS S+ ++       ++K
Sbjct: 144 TCSSEREEAEAAASSANEESSPVPSESNKNSPEKETKGEVK 184

>PKCB1_HUMAN (Q9ULU4) Protein kinase C-binding protein 1 (Rack7) (Cutaneous T-cell|
            lymphoma associated antigen se14-3) (CTCL tumor antigen
            se14-3) (Zinc finger MYND domain containing protein 8)
          Length = 1186

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 401  LQQRSKGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRD 580
            L + S+G+     SA S+TA   +      TS +   +    L LSGS +         +
Sbjct: 1082 LNKSSQGSSSSTQSAPSETASASK---EKETSAEKSKESGSTLDLSGSRETPSSILLGSN 1138

Query: 581  NGLMPSASSGSAWNS----RASNKMKHSTST 661
             G   S S+ S+W+S    R S +  H+TST
Sbjct: 1139 QGSDHSRSNKSSWSSSDEKRGSTRSDHNTST 1169

>RFX1_YEAST (P48743) RFX-like DNA-binding protein RFX1|
          Length = 811

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
 Frame = +2

Query: 149 LSFPPLQDQDIPDARMDAIPYETSFPPVSEQQSRYALALNQSSRGSARLGDESLFPPL-- 322
           L+ P    Q  P +     P   + PP++ + S     L+QSS          + PPL  
Sbjct: 74  LNAPKYSSQPPPASHTYLPPMSVNIPPIASKSSSIYSLLHQSSPRPET--PNPILPPLIG 131

Query: 323 --PGSSNKGSASTQQGLQSLAKNTLAS--------RLQQRSKGTVKVLYSARSQTAENPE 472
             PGS       TQ   Q   +   A+         L + +     + + +      NP 
Sbjct: 132 SGPGSHKPSPTPTQPPAQPATQRQPATYSVYPASISLNRSNSSAYPLSFKSEETLNNNP- 190

Query: 473 IVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDN 583
             P  +  T T+P          +SQ + ++  +R N
Sbjct: 191 --PTAAKRTNTFPSIPSSTKKQKTSQEKRISSISRRN 225

>ARGC_BUCAP (Q8KA61) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 334

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 261 LLIRAQGVLQGLVMNHYSLHCLGQVTRVLLQHNRGCKVLLRTHLHQGFNNVVRAP 425
           L++ A G     ++N+ + H   ++ ++ +  N      L + LHQ F N++  P
Sbjct: 5   LIVGASGYSGAELVNYINRHMFSKIKKIFVSENSSHIGKLFSELHQEFKNIIDLP 59

>DDEF2_MOUSE (Q7SIG6) Development and differentiation-enhancing factor 2 (Pyk2|
            C-terminus associated protein) (PAP) (Paxillin-associated
            protein with ARFGAP activity 3) (PAG3)
          Length = 958

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 32/127 (25%), Positives = 50/127 (39%)
 Frame = +2

Query: 152  SFPPLQDQDIPDARMDAIPYETSFPPVSEQQSRYALALNQSSRGSARLGDESLFPPLPGS 331
            S PPL     P   +   P  T+ PP   + S    A+NQ S+ S     +S  PPLP  
Sbjct: 786  SAPPL-----PPRNVGKDPLTTTPPPPVAKTSGTLEAMNQPSKSSQPGTSQSKPPPLPPQ 840

Query: 332  SNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARSQTAENPEIVPHVSTSTQTWP 511
                    +    +     L ++ Q R       L +A     + P  +P  S +T++ P
Sbjct: 841  PPSRLPQKKPASGTDKPTPLTNKGQPRGPEASGPLSNA--MALQPPAPMPRKSQATKSKP 898

Query: 512  KPDQGLH 532
            K  + L+
Sbjct: 899  KRVKALY 905

>MED14_SCHPO (Q9P7Y4) RNA polymerase II mediator complex subunit 14 (RNA|
           polymerase II mediator complex protein pmc1)
          Length = 879

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +3

Query: 147 NCLFLHFKTRIFLMLGWMPFPMKPRFLPSQSSN-----QGMRWLLIRAQGVLQGLVMNHY 311
           N   LHF  R        PF +  +FL    S+     Q +R ++ R +GVL    + + 
Sbjct: 719 NTFTLHFFNR------HSPFHLISQFLQDTFSDGPSAIQPLRVIMDRTRGVLVAQELGYV 772

Query: 312 SLHCLGQVTRVLLQHNRGCKVLLRTH 389
            L    +  R++L  N G +VLL  H
Sbjct: 773 VLARSLRQYRIILSKNHGIQVLLNRH 798

>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 442

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +2

Query: 263 LNQSSRGSARLGDESLFPPLPGSSNKGSASTQQGLQSLAKNT---LASRLQQRSKGTVKV 433
           LN+S   +A  G ESL P    SSN  +A+T    +     T   L+S     S  +V  
Sbjct: 325 LNKSKTPAAPSGSESLPPASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSS--SVSQ 382

Query: 434 LYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDNGLMPSASSGS 613
            +S  + +   P I P +S            L LS       V+QS +      ++S   
Sbjct: 383 TFSVSAMSGHGPSIHPVLS-----------ALKLSPQGYASPVSQSPQ------TSSKQD 425

Query: 614 AWNS 625
           +WNS
Sbjct: 426 SWNS 429

>SSH3_RAT (Q5XIS1) Protein phosphatase Slingshot homolog 3 (EC 3.1.3.48) (EC|
           3.1.3.16) (SSH-3L)
          Length = 652

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +2

Query: 314 PPLPGSSNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARSQTAENPEIVPHVST 493
           PP PG S +G    Q+G Q   K  L  R +   +G ++ +  +  + +  PE       
Sbjct: 498 PPEPGGSGEGMVMGQKGSQETPKEELGLRPRINLRGVMRSI--SLLEPSSEPESTTEAGD 555

Query: 494 STQTWPKPDQGLH 532
             + +   ++ LH
Sbjct: 556 LPEVFSSDEEPLH 568


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,619,135
Number of Sequences: 219361
Number of extensions: 2258351
Number of successful extensions: 5619
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5615
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)