ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3g08 |
|---|---|
| Clone Library Name | barley_pub |
>DGUOK_HUMAN (Q16854) Deoxyguanosine kinase, mitochondrial precursor (EC| 2.7.1.113) (dGK) Length = 277 Score = 58.5 bits (140), Expect = 1e-08 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDI----------GPDHFNILDA 472 +EGNI+VGKSTF++ + E + EPVA WQ+I N+LD Sbjct: 43 IEGNIAVGKSTFVKLLTKTYPEWH----VATEPVATWQNIQAAGTQKACTAQSLGNLLDM 98 Query: 473 FYAEPQRYAYTFQNYVFVTRVMQERESF 556 Y EP R++YTFQ + F++R+ + E F Sbjct: 99 MYREPARWSYTFQTFSFLSRLKVQLEPF 126
>DCK2_FOWPV (Q9J579) Probable deoxycytidine kinase FPV151 (EC 2.7.1.74) (dCK)| Length = 235 Score = 56.6 bits (135), Expect = 5e-08 Identities = 32/93 (34%), Positives = 50/93 (53%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAY 502 +EGNIS GKST + +++ +V EP+ +W+ N+LD Y +P R+AY Sbjct: 28 IEGNISAGKSTLINILSDNGYN------VVQEPLEQWRGN-----NLLDKLYKDPSRWAY 76 Query: 503 TFQNYVFVTRVMQERESFKWNKASPADGKEVFS 601 TFQ++ F TR ++ NK + + VFS Sbjct: 77 TFQSHAFWTRTKTYIDALNKNKGNIILERSVFS 109
>DGUOK_MOUSE (Q9QX60) Deoxyguanosine kinase, mitochondrial precursor (EC| 2.7.1.113) (dGK) Length = 277 Score = 56.2 bits (134), Expect = 7e-08 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%) Frame = +2 Query: 320 CVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHF----------NILD 469 C+EGNI+VGKSTF++ + E ++ EP+A WQ+I N+L+ Sbjct: 42 CIEGNIAVGKSTFVKLLMKTHPEW----QVATEPIAAWQNIQAAGAQKDGTSKRLGNLLE 97 Query: 470 AFYAEPQRYAYTFQNYVFVTRVMQERE 550 Y EP R++YTFQ F++R+ + E Sbjct: 98 MMYQEPARWSYTFQTLSFMSRLKVQLE 124
>DCK_HUMAN (P27707) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 13/90 (14%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGP--DHF-----------NI 463 +EGNI+ GKSTF+ N +L + E+VPEPVA+W ++ D F N+ Sbjct: 26 IEGNIAAGKSTFV----NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 Query: 464 LDAFYAEPQRYAYTFQNYVFVTRVMQERES 553 L Y +P+R+++TFQ Y ++R+ + S Sbjct: 82 LQMMYEKPERWSFTFQTYACLSRIRAQLAS 111
>DCK_MOUSE (P43346) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 13/90 (14%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGP--DHF-----------NI 463 +EGNI+ GKSTF+ + + + E+VPEPVA+W ++ + F N+ Sbjct: 26 IEGNIAAGKSTFVNILKQASEDW----EVVPEPVARWCNVQSTQEEFEELTTSQKSGGNV 81 Query: 464 LDAFYAEPQRYAYTFQNYVFVTRVMQERES 553 L Y +P+R+++TFQ+Y ++R+ + S Sbjct: 82 LQMMYEKPERWSFTFQSYACLSRIRAQLAS 111
>KITH_ICHV1 (P28855) Thymidine kinase (EC 2.7.1.21)| Length = 228 Score = 52.8 bits (125), Expect = 8e-07 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Frame = +2 Query: 311 LTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQ 490 L FCVEGNI GKST ++ + V +V EPV +W + + N L+ Y +P Sbjct: 17 LVFCVEGNIGCGKSTLVKALMERV--AGSGVNVVEEPVDQW--VNHNGKNYLELSYTDPT 72 Query: 491 RYAYTFQNYVFVTRV-MQERESFKWNKASPADGKEVF 598 YA FQN VF + V +Q ++ + SP VF Sbjct: 73 GYAVPFQNLVFDSYVNVQRLQNPDIMERSPMSATRVF 109
>DCK_RAT (P48769) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 13/90 (14%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGP--DHF-----------NI 463 +EGNI+ GKSTF+ N ++ + E+VPEPVA+W ++ D F N+ Sbjct: 26 IEGNIAAGKSTFV----NILKQVCEDWEVVPEPVARWCNVQSTQDEFEELTTSQKSGGNV 81 Query: 464 LDAFYAEPQRYAYTFQNYVFVTRVMQERES 553 L Y +P+R+++ FQ+Y ++R+ + S Sbjct: 82 LQMMYEKPERWSFIFQSYACLSRIRAQLAS 111
>KITM_MOUSE (Q9R088) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 270 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/81 (35%), Positives = 46/81 (56%) Frame = +2 Query: 299 EKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFY 478 ++K+ C+EGNI+ GK+T L+ +N T VE++ EPV KW+++ N L Y Sbjct: 52 KEKKAVVCIEGNIASGKTTCLEFFSNTTD-----VEVLMEPVLKWRNV--HGHNPLSLMY 104 Query: 479 AEPQRYAYTFQNYVFVTRVMQ 541 + R+ T Q YV +T + Q Sbjct: 105 HDASRWGLTLQTYVQLTMLDQ 125
>KITM_MACFA (Q9N0C5) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 265 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/77 (36%), Positives = 45/77 (58%) Frame = +2 Query: 299 EKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFY 478 ++K+ CVEGNI+ GK+T L+ +N T +E++ EPV+KW+++ N L Y Sbjct: 47 KEKKSVICVEGNIASGKTTCLEFFSNATD-----IEVLTEPVSKWRNV--RGHNPLGLMY 99 Query: 479 AEPQRYAYTFQNYVFVT 529 + R+ T Q YV +T Sbjct: 100 QDASRWGLTLQTYVQLT 116
>KITM_HUMAN (O00142) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 266 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/77 (37%), Positives = 45/77 (58%) Frame = +2 Query: 299 EKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFY 478 ++K+ CVEGNI+ GK+T L+ +N T VE++ EPV+KW+++ N L Y Sbjct: 47 KEKKSVICVEGNIASGKTTCLEFFSNATD-----VEVLTEPVSKWRNV--RGHNPLGLMY 99 Query: 479 AEPQRYAYTFQNYVFVT 529 + R+ T Q YV +T Sbjct: 100 HDASRWGLTLQTYVQLT 116
>DNK_DROME (Q9XZT6) Deoxynucleoside kinase (EC 2.7.1.145) (Deoxyribonucleoside| kinase) (Dm-dNK) (Multispecific deoxynucleoside kinase) Length = 250 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/96 (31%), Positives = 55/96 (57%) Frame = +2 Query: 314 TFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQR 493 T +EGNI GK+T+L N + ++ + ++ EPV KW+++ + N+L+ Y +P++ Sbjct: 22 TVLIEGNIGSGKTTYL----NHFEKYKNDICLLTEPVEKWRNV--NGVNLLELMYKDPKK 75 Query: 494 YAYTFQNYVFVTRVMQERESFKWNKASPADGKEVFS 601 +A FQ+YV +T M + + NK + +FS Sbjct: 76 WAMPFQSYVTLT--MLQSHTAPTNKKLKIMERSIFS 109
>EZRA_STRP8 (Q8P1M3) Septation ring formation regulator ezrA| Length = 574 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/77 (31%), Positives = 32/77 (41%) Frame = +2 Query: 341 VGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYV 520 V S L R TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 197 VEASEVLDRAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKN 256 Query: 521 FVTRVMQERESFKWNKA 571 R + RES + N + Sbjct: 257 IEARFQEIRESIRANSS 273
>EZRA_STRP6 (Q5XD04) Septation ring formation regulator ezrA| Length = 574 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/77 (31%), Positives = 32/77 (41%) Frame = +2 Query: 341 VGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYV 520 V S L R TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 197 VEASEVLDRAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKN 256 Query: 521 FVTRVMQERESFKWNKA 571 R + RES + N + Sbjct: 257 IEARFQEIRESIRANSS 273
>EZRA_STRP3 (Q8K839) Septation ring formation regulator ezrA| Length = 574 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/77 (31%), Positives = 32/77 (41%) Frame = +2 Query: 341 VGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYV 520 V S L R TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 197 VEASEVLDRAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKN 256 Query: 521 FVTRVMQERESFKWNKA 571 R + RES + N + Sbjct: 257 IEARFQEIRESIRANSS 273
>EZRA_STRP1 (Q9A0K9) Septation ring formation regulator ezrA| Length = 574 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/77 (31%), Positives = 32/77 (41%) Frame = +2 Query: 341 VGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYV 520 V S L R TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 197 VEASEVLDRAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKN 256 Query: 521 FVTRVMQERESFKWNKA 571 R + RES + N + Sbjct: 257 IEARFQEIRESIRANSS 273
>BAF1_CAEEL (Q03565) Barrier-to-autointegration factor 1| Length = 89 Score = 35.0 bits (79), Expect = 0.17 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = +1 Query: 40 GSGELLAIPGVGPRNQRKLVEKGFDGVAPLKQLYRDKFFGRSDDKMVEFLQSSVGIIHKN 219 G E+ I G+GP KL + GFD L Y + +D +E+L+ + G+ N Sbjct: 16 GDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQY--LLLKKDEDLFIEWLKETAGVT-AN 72 Query: 220 HAESITLFIKESVDE 264 HA++ + E D+ Sbjct: 73 HAKTAFNCLNEWADQ 87
>RAN_DICDI (P33519) GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like| protein TC4) Length = 212 Score = 34.3 bits (77), Expect = 0.29 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = +2 Query: 293 LAEKKRLTFCVEGNISVGKSTFLQRIANETIELRDL--VEIVPEPVAKWQDIGPDHFNIL 466 +AEK+++ + G+ VGK+TF+QR E R + + + P+ + + G HFN+ Sbjct: 1 MAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVW 60 Query: 467 D 469 D Sbjct: 61 D 61
>DCK1_FOWPV (P21974) Probable deoxycytidine kinase FPV059 (EC 2.7.1.74) (dCK)| Length = 219 Score = 33.1 bits (74), Expect = 0.64 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +2 Query: 323 VEGNISVGKSTFLQ--RIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRY 496 +EGNIS GK+ L R N + D VE P+ K ++ F+ P R+ Sbjct: 14 IEGNISSGKTDVLNILRNINNVVSFHD-VEDRYTPIEK---------ELIRKFHENPSRW 63 Query: 497 AYTFQNYVFVTRVMQERESF 556 +Y Q + + RV E F Sbjct: 64 SYALQTHYCMKRVRMHLECF 83
>EZRA_STRMU (Q8DTQ3) Septation ring formation regulator ezrA| Length = 574 Score = 32.7 bits (73), Expect = 0.84 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = +2 Query: 341 VGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYV 520 V S L R TI L + E +P VAK +D PD + L++ Y Y F Sbjct: 197 VEASEILDRAEEHTIALGQMTEKIPAIVAKLEDDFPDQLDDLESGYRRLLEENYHFPEKN 256 Query: 521 FVTRVMQERES 553 R + RE+ Sbjct: 257 IEERFQEVREA 267
>UVRC_XANOR (Q5H0H5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 618 Score = 32.7 bits (73), Expect = 0.84 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 10 GQRGRGDAATGSGELLAIPGVGPRNQRKLVEKGFDGVAPLK 132 G RGR A + +L IPG+GPR + L+ K F G+ LK Sbjct: 540 GHRGRRQKARMTSKLEDIPGIGPRRRASLL-KHFGGLVGLK 579
>UVRC_XANC8 (Q4UV60) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 618 Score = 32.7 bits (73), Expect = 0.84 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 10 GQRGRGDAATGSGELLAIPGVGPRNQRKLVEKGFDGVAPLK 132 G RGR A + +L IPG+GPR + L+ K F G+ LK Sbjct: 540 GHRGRRQKARMTSKLEDIPGIGPRRRASLL-KHFGGLVGLK 579
>EZRA_STRA5 (Q8E0U6) Septation ring formation regulator ezrA| Length = 574 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/72 (29%), Positives = 30/72 (41%) Frame = +2 Query: 350 STFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYVFVT 529 S L + TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 200 SEVLNKAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKDIEQ 259 Query: 530 RVMQERESFKWN 565 R + RE+ + N Sbjct: 260 RFQEVREAIRSN 271
>EZRA_STRA3 (Q8E6G4) Septation ring formation regulator ezrA| Length = 574 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/72 (29%), Positives = 30/72 (41%) Frame = +2 Query: 350 STFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPQRYAYTFQNYVFVT 529 S L + TI L + E +P VAK +D PD + L+ Y Y F Sbjct: 200 SEVLNKAEEHTIALGQITEQIPAIVAKLEDDFPDQLDDLETGYRRLLEENYHFPEKDIEQ 259 Query: 530 RVMQERESFKWN 565 R + RE+ + N Sbjct: 260 RFQEVREAIRSN 271
>UVRC_XANC5 (Q3BTC3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 619 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 10 GQRGRGDAATGSGELLAIPGVGPRNQRKLVEKGFDGVAPLK 132 G RGR A + +L IPG+GPR + L+ K F G+ LK Sbjct: 540 GHRGRRHKARMTSKLEDIPGIGPRRRASLL-KHFGGLVGLK 579
>RADA_NANEQ (Q74MX9) DNA repair and recombination protein radA| Length = 325 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +1 Query: 49 ELLAIPGVGPRNQRKLVEKGFDGVAPLKQLYRDKFFGRSD------DKMVEFLQSSVGII 210 ++ ++PGVGP+ KL+ G+D + + ++ +D K++E +G++ Sbjct: 12 DIRSLPGVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLL 71 Query: 211 HKNHAESI 234 AE + Sbjct: 72 EFKTAEEV 79
>YAAF_BACSU (P37529) Hypothetical protein yaaF| Length = 217 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/85 (24%), Positives = 35/85 (41%) Frame = +2 Query: 305 KRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAE 484 K V G + VGKST + +A L E+ DH L+ FY + Sbjct: 8 KNSIITVAGTVGVGKSTLTKTLAKRLGFKTSLEEV-------------DHNPYLEKFYHD 54 Query: 485 PQRYAYTFQNYVFVTRVMQERESFK 559 +R+++ Q Y R +++ F+ Sbjct: 55 FERWSFHLQIYFLAERFKEQKTIFE 79
>FEPC_ECOLI (P23878) Ferric enterobactin transport ATP-binding protein fepC| Length = 271 Score = 31.2 bits (69), Expect = 2.4 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Frame = -1 Query: 264 LINALFNEQSYTLSMVLVYDAN*TLQELNHLIIR---------PAKELIPIELLERRNAI 112 L++ L E+ YTL+ VL +D N + +HLI KE++ EL+ER + Sbjct: 185 LLSELNREKGYTLAAVL-HDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGL 243 Query: 111 ESLLNELPLVPRPYSRNGKQLPTPRRRIAPASLPS 7 ++ + P+ G L P R AP++ S Sbjct: 244 RCMIIDDPVA-------GTPLVVPLGRTAPSTANS 271
>CBIO3_BACC1 (Q734T1) Putative cobalt import ATP-binding protein cbiO 3| Length = 553 Score = 30.8 bits (68), Expect = 3.2 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 15/107 (14%) Frame = +2 Query: 272 KTLTHLSLAEKKRLTFCVEGNISVGKSTFLQRIANETIEL----------RDLVEIVPEP 421 K L H+SL+ +K + G GK+T L+ + E + + L+E VP+ Sbjct: 22 KALQHISLSVQKGEFIALAGGSGSGKTTLLKHLKKELLPIGKRTGDTYYDGTLLENVPDL 81 Query: 422 VAKWQDIG-----PDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQER 547 ++ Q+IG P++ ++D Q A++ +N + ++Q+R Sbjct: 82 LSA-QEIGMVFQNPENQLVMDTVI---QELAFSLENIGLPSHIIQKR 124
>DNJ16_ARATH (Q8VXV4) Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1)| (AtJ16) (AtDjB16) Length = 436 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 192 LQELNHLIIRPAKELIPI-ELLERRNAIESLLNELPLVPRPYSRNGKQLPTPRRRIAPAS 16 L + + R A+E+ I ELL++RN I S +PL+ R S+N + + ++ A A Sbjct: 322 LVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKRSSSKNRMRKSSFKKAAAKAP 381 Query: 15 LPS 7 P+ Sbjct: 382 APT 384
>IF2_CLOAB (Q97I51) Translation initiation factor IF-2| Length = 693 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%) Frame = +1 Query: 124 PLKQLYR-DKFFGRSDDKMVEFLQSSVGIIHKNH--------AESITLFIKESVDEEVK 273 P ++Y K GRS +++ L GI+ KNH AE I + ES DE+ K Sbjct: 2 PKVRIYELSKELGRSSKELINILHDEFGIVVKNHMSVIDEEDAELIKEMLSESNDEDKK 60
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -3 Query: 106 PSQRASSGSAALLQEWQAAPHSPSPHRPGLSALVP 2 PS S+ S +L+ W A H P PHRP L P Sbjct: 358 PSTSTSTTSTSLI--WPAQTHPPQPHRPTRPQLSP 390
>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3637 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +1 Query: 118 VAPLKQLYRDKFFGRSDDKMVEFLQSSVGIIHKNHAESITLFIKESVDEEVKDTDTSKPC 297 V P+K+ YR++ R D V+FL+S ++ + + +T + ++ VD + D+S+ C Sbjct: 3148 VNPIKKFYREELVSRGPDTGVKFLKS-----YQPYGQVLTPYHRDRVDGAI-TIDSSQGC 3201
>CBIO4_BACAN (Q81N53) Putative cobalt import ATP-binding protein cbiO 4| Length = 551 Score = 30.0 bits (66), Expect = 5.4 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 15/107 (14%) Frame = +2 Query: 272 KTLTHLSLAEKKRLTFCVEGNISVGKSTFLQRIANETIEL----------RDLVEIVPEP 421 K L H+SL+ +K + G GK+T L+ E + + L+E VP+ Sbjct: 20 KALQHISLSVQKGEFIALAGGSGSGKTTLLKHFKKELLPIGKRTGDTYYDGTLLENVPDL 79 Query: 422 VAKWQDIG-----PDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQER 547 ++ Q+IG P++ ++D Q A++ +N + ++Q+R Sbjct: 80 LSA-QEIGMVFQNPENQLVMDTVI---QELAFSLENIGLPSHIIQKR 122
>TRAD1_ECOLI (P09130) Protein traD| Length = 717 Score = 29.6 bits (65), Expect = 7.1 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 317 FCVEGNISVGKSTFLQRIANETIELRDLVEI 409 FC+ G + GKS ++R+AN + D+V I Sbjct: 188 FCLHGTVGAGKSEVIRRLANYARQRGDMVVI 218
>PKH3_YEAST (Q03306) Serine/threonine-protein kinase PKH3 (EC 2.7.11.1)| (Pkb-activating kinase homolog 3) Length = 898 Score = 29.6 bits (65), Expect = 7.1 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +3 Query: 291 ALQKKRGSPSVLKGISVSGSLHSFKELPTRLSNYVTLWK*YLNLLQNGRILGLITLTY 464 AL KK SP+ + I V H KE + YVT+ K +NLL G+I L Y Sbjct: 28 ALDKK--SPNKIYAIKVCSKKHIIKEAKVK---YVTIEKNTMNLLAQKHHAGIIKLYY 80
>TRAD2_ECOLI (P22708) Protein traD| Length = 738 Score = 29.6 bits (65), Expect = 7.1 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 317 FCVEGNISVGKSTFLQRIANETIELRDLVEI 409 FC+ G + GKS ++R+AN + D+V I Sbjct: 188 FCLHGTVGAGKSEVIRRLANYARQRGDMVVI 218
>KITH_HHV23 (P04407) Thymidine kinase (EC 2.7.1.21)| Length = 376 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2 Query: 323 VEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIG 445 ++G VGK+T ++ E + RD + VPEP+ WQ +G Sbjct: 54 IDGPHGVGKTTTSAQLM-EALGPRDNIVYVPEPMTYWQVLG 93
>KITH_HHV1K (P17402) Thymidine kinase (EC 2.7.1.21)| Length = 376 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +2 Query: 263 RR*KTLTHLSLAEKKR--LTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQ 436 RR + T + L +K L ++G +GK+T Q + + RD + VPEP+ WQ Sbjct: 32 RRQQEATEVRLEQKMPTLLRVYIDGPHGMGKTTTTQLLV--ALGSRDDIVYVPEPMTYWQ 89 Query: 437 DIG 445 +G Sbjct: 90 VLG 92
>KITH_HHV1C (P06478) Thymidine kinase (EC 2.7.1.21)| Length = 376 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +2 Query: 263 RR*KTLTHLSLAEKKR--LTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQ 436 RR + T + L +K L ++G +GK+T Q + + RD + VPEP+ WQ Sbjct: 32 RRQQEATEVRLEQKMPTLLRVYIDGPHGMGKTTTTQLLV--ALGSRDDIVYVPEPMTYWQ 89 Query: 437 DIG 445 +G Sbjct: 90 VLG 92
>KITH_HHV1 (Q9QNF7) Thymidine kinase (EC 2.7.1.21)| Length = 376 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +2 Query: 263 RR*KTLTHLSLAEKKR--LTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQ 436 RR + T + L +K L ++G +GK+T Q + + RD + VPEP+ WQ Sbjct: 32 RRQQEATEVRLEQKMPTLLRVYIDGPHGMGKTTTTQLLV--ALGSRDDIVYVPEPMTYWQ 89 Query: 437 DIG 445 +G Sbjct: 90 VLG 92
>SUCD_CLOKL (P38947) Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC| 1.2.1.16) Length = 472 Score = 29.6 bits (65), Expect = 7.1 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +1 Query: 4 ARGQRGRGDAATGSGELLAIPGVGPRNQRKLVEKGFD 114 A G GR AA SG GVGP N + +V+KG+D Sbjct: 188 ATGGAGRVKAAYSSGR--PAYGVGPGNSQVIVDKGYD 222
>RADA_HALVO (Q48328) DNA repair and recombination protein radA| Length = 343 Score = 29.6 bits (65), Expect = 7.1 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 49 ELLAIPGVGPRNQRKLVEKGFD 114 +L ++PGVGP KLVE G+D Sbjct: 5 DLESLPGVGPATADKLVESGYD 26
>UVRC_PSEAE (Q9I0Q1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 608 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 10 GQRGRGDAATGSGELLAIPGVGPRNQRKLVEKGFDGVAPLKQLYRDK 150 G R R A + L +PGVGP+ +R L+ K F G+ L + D+ Sbjct: 541 GHRARRGKARRTSTLEDVPGVGPKRRRDLL-KHFGGLQELSRASIDE 586
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 29.3 bits (64), Expect = 9.3 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = +1 Query: 76 PRNQRKLVEKGFDGVAPLKQLYRDKF---FGRSDDKMVEFLQSSVGIIHKNHAESITLFI 246 P ++ V K + L + + +K FG SDD VE +SS GI + SIT+ I Sbjct: 465 PVENKQTVPKAHTKIRALVRAHSEKDQPPFGDSDDS-VEADKSSPGIHLERSQASITVDI 523 Query: 247 KESVDEEV 270 V+EEV Sbjct: 524 NTQVEEEV 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,672,618 Number of Sequences: 219361 Number of extensions: 1831876 Number of successful extensions: 6106 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 5895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6086 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
