ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016226.1| Zea mays clone Contig59 mRNA sequence 371 2e-99
2gb|AY105562.1| Zea mays PCO069731 mRNA sequence 371 2e-99
3ref|XM_467481.1| Oryza sativa (japonica cultivar-group), mRNA 363 4e-97
4dbj|AK065836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 4e-97
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 323 3e-85
6dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 323 3e-85
7dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 323 3e-85
8emb|CR691112.2|CNS0FW7O Tetraodon nigroviridis full-length cDNA 44 0.44
9gb|AC004926.2| Homo sapiens PAC clone RP5-910H9 from 7, complete... 42 1.7
10gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.7
11ref|XM_476085.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
12gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
13ref|XM_465025.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
14gb|BT019037.1| Zea mays clone Contig554.F mRNA sequence 40 6.9
15gb|AY196994.1| Streptomyces griseoruber heda cluster, complete s... 40 6.9
16gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, co... 40 6.9
17gb|AC149067.3| Mus musculus BAC clone RP23-56C20 from chromosome... 40 6.9
18gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
19emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23... 40 6.9
20emb|AJ938012.1| Aeromonas caviae transposon Tn903-interrupted se... 40 6.9
21emb|BX927244.11| Zebrafish DNA sequence from clone CH211-116O3 i... 40 6.9
22emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in ... 40 6.9
23gb|AC087269.5| Homo sapiens chromosome 8, clone RP11-211C9, comp... 40 6.9
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
27dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
28gb|AF363793.1| Caiman crocodilus apaporiensis L-lactate dehydrog... 40 6.9
29dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
30dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
31dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
32dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
33emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.9
34dbj|AK066342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
35dbj|AK065628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
36emb|CR848009.9| Zebrafish DNA sequence from clone CH211-210O21 i... 40 6.9
37emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.9
38dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.9
39gb|AC110885.14| Mus musculus chromosome 7, clone RP24-342P18, co... 40 6.9
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9 
>gb|BT016226.1| Zea mays clone Contig59 mRNA sequence
          Length = 820

 Score =  371 bits (187), Expect = 2e-99
 Identities = 377/439 (85%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  gatggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgc 115
           |||||||||||||||||||   ||||||||| ||||||| || | ||| || || |||||
Sbjct: 164 gatggaggatgactcgccgctgacgaagacgatgaagggtgcggtgacaggactcgccgc 223

                                                                       
Query: 116 gggcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgcca 175
           ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 224 ggggaccatctggggcaccgtcgtcgccacctggtacgacgtgccccgtgtggagcgcca 283

                                                                       
Query: 176 cgtcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcacttt 235
           |||||||||||| |||||  |||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 284 cgtcgcgctccctggccttatccggacgctcaagatgtgcggcacctacggggccacctt 343

                                                                       
Query: 236 cgccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaa 295
           |||| || |||| || || |||||||| || |||||| | ||||||||||||||||||||
Sbjct: 344 cgccaccatcgggggcctctacatcggcgtcgagcagctcgtgcagagccagcgcaagaa 403

                                                                       
Query: 296 gcgcgacttcgtcaacggggccatcggcgccttcgtctccggcgccaccgtctatggcta 355
           |||||||||||||||||||||| ||||||| |||||  |||| ||| | ||||  |||||
Sbjct: 404 gcgcgacttcgtcaacggggccgtcggcgcgttcgttgccggagcctctgtctgcggcta 463

                                                                       
Query: 356 cagaggaaagagcattaagtctgccctcatcggtggttctagcctggcattcacatctgc 415
           |||||||||||| ||| |||| ||||||||||| || ||  | ||||| |||||||||||
Sbjct: 464 cagaggaaagagtattcagtcagccctcatcggaggctcctgtctggctttcacatctgc 523

                                                                       
Query: 416 catcctggacgttggtggtaatactacccagagtggacaatggcaaagcgtaccatgcat 475
             | |||||| |||| || ||||| | ||||||| ||||| ||||||| |||| |||| |
Sbjct: 524 tgtgctggacattggcggcaatacga-ccagagttgacaacggcaaagagtactatgcct 582

                              
Query: 476 acacaatggaaaagaagcc 494
           ||||||  || ||||||||
Sbjct: 583 acacaactgagaagaagcc 601
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>gb|AY105562.1| Zea mays PCO069731 mRNA sequence
          Length = 1026

 Score =  371 bits (187), Expect = 2e-99
 Identities = 377/439 (85%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  gatggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgc 115
           |||||||||||||||||||   ||||||||| ||||||| || | ||| || || |||||
Sbjct: 329 gatggaggatgactcgccgctgacgaagacgatgaagggtgcggtgacaggactcgccgc 388

                                                                       
Query: 116 gggcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgcca 175
           ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 389 ggggaccatctggggcaccgtcgtcgccacctggtacgacgtgccccgtgtggagcgcca 448

                                                                       
Query: 176 cgtcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcacttt 235
           |||||||||||| |||||  |||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 449 cgtcgcgctccctggccttatccggacgctcaagatgtgcggcacctacggggccacctt 508

                                                                       
Query: 236 cgccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaa 295
           |||| || |||| || || |||||||| || |||||| | ||||||||||||||||||||
Sbjct: 509 cgccaccatcgggggcctctacatcggcgtcgagcagctcgtgcagagccagcgcaagaa 568

                                                                       
Query: 296 gcgcgacttcgtcaacggggccatcggcgccttcgtctccggcgccaccgtctatggcta 355
           |||||||||||||||||||||| ||||||| |||||  |||| ||| | ||||  |||||
Sbjct: 569 gcgcgacttcgtcaacggggccgtcggcgcgttcgttgccggagcctctgtctgcggcta 628

                                                                       
Query: 356 cagaggaaagagcattaagtctgccctcatcggtggttctagcctggcattcacatctgc 415
           |||||||||||| ||| |||| ||||||||||| || ||  | ||||| |||||||||||
Sbjct: 629 cagaggaaagagtattcagtcagccctcatcggaggctcctgtctggctttcacatctgc 688

                                                                       
Query: 416 catcctggacgttggtggtaatactacccagagtggacaatggcaaagcgtaccatgcat 475
             | |||||| |||| || ||||| | ||||||| ||||| ||||||| |||| |||| |
Sbjct: 689 tgtgctggacattggcggcaatacga-ccagagttgacaacggcaaagagtactatgcct 747

                              
Query: 476 acacaatggaaaagaagcc 494
           ||||||  || ||||||||
Sbjct: 748 acacaactgagaagaagcc 766
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>ref|XM_467481.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 994

 Score =  363 bits (183), Expect = 4e-97
 Identities = 355/411 (86%), Gaps = 1/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 58  tggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgcgg 117
           ||||||| ||| ||||||  |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 337 tggaggaggacacgccggtgacgaagacggtgaaggccgcggcgacggggctggccgcgg 396

                                                                       
Query: 118 gcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgccacg 177
           | ||||||||||||||  ||||||| || ||| |||||||||||||||| ||||||||||
Sbjct: 397 ggaccatctggggcacggtcgtcgcgacatggcacgacgtgccccgggtcgagcgccacg 456

                                                                       
Query: 178 tcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcactttcg 237
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 457 tcgcgctcccggggctcatccggacgctcaagatgtgcggcagctacggggccacgttcg 516

                                                                       
Query: 238 ccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaagc 297
           |||||||||| || || |||||||| || |||||| | |||| |||||||||||||||| 
Sbjct: 517 ccgccgtcgggggcctctacatcggcgtcgagcagctcgtgctgagccagcgcaagaaga 576

                                                                       
Query: 298 gcgacttcgtcaacggggccatcggcgccttcgtctccggcgccaccgtctatggctaca 357
            ||||| ||||||||||||| |||||||||||||| ||||||||||| | |  |||||||
Sbjct: 577 acgactacgtcaacggggccgtcggcgccttcgtcgccggcgccaccatattcggctaca 636

                                                                       
Query: 358 gaggaaagagcattaagtctgccctcatcggtggttctagcctggcattcacatctgcca 417
            ||||| ||||||    ||||| ||||| | ||||||| ||||||| || ||||||||  
Sbjct: 637 aaggaaggagcatcccttctgcgctcatagctggttcttgcctggcttttacatctgctg 696

                                                              
Query: 418 tcctggacgttggtggtaatactacccagagtggacaatggcaaagcgtac 468
             ||||||||||| || || |||| ||||||||||||||||||||| ||||
Sbjct: 697 cgctggacgttggcggcaacacta-ccagagtggacaatggcaaagagtac 746
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>dbj|AK065836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037P14, full
           insert sequence
          Length = 995

 Score =  363 bits (183), Expect = 4e-97
 Identities = 355/411 (86%), Gaps = 1/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 58  tggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgcgg 117
           ||||||| ||| ||||||  |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 337 tggaggaggacacgccggtgacgaagacggtgaaggccgcggcgacggggctggccgcgg 396

                                                                       
Query: 118 gcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgccacg 177
           | ||||||||||||||  ||||||| || ||| |||||||||||||||| ||||||||||
Sbjct: 397 ggaccatctggggcacggtcgtcgcgacatggcacgacgtgccccgggtcgagcgccacg 456

                                                                       
Query: 178 tcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcactttcg 237
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 457 tcgcgctcccggggctcatccggacgctcaagatgtgcggcagctacggggccacgttcg 516

                                                                       
Query: 238 ccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaagc 297
           |||||||||| || || |||||||| || |||||| | |||| |||||||||||||||| 
Sbjct: 517 ccgccgtcgggggcctctacatcggcgtcgagcagctcgtgctgagccagcgcaagaaga 576

                                                                       
Query: 298 gcgacttcgtcaacggggccatcggcgccttcgtctccggcgccaccgtctatggctaca 357
            ||||| ||||||||||||| |||||||||||||| ||||||||||| | |  |||||||
Sbjct: 577 acgactacgtcaacggggccgtcggcgccttcgtcgccggcgccaccatattcggctaca 636

                                                                       
Query: 358 gaggaaagagcattaagtctgccctcatcggtggttctagcctggcattcacatctgcca 417
            ||||| ||||||    ||||| ||||| | ||||||| ||||||| || ||||||||  
Sbjct: 637 aaggaaggagcatcccttctgcgctcatagctggttcttgcctggcttttacatctgctg 696

                                                              
Query: 418 tcctggacgttggtggtaatactacccagagtggacaatggcaaagcgtac 468
             ||||||||||| || || |||| ||||||||||||||||||||| ||||
Sbjct: 697 cgctggacgttggcggcaacacta-ccagagtggacaatggcaaagagtac 746
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  323 bits (163), Expect = 3e-85
 Identities = 256/287 (89%)
 Strand = Plus / Plus

                                                                            
Query: 58       tggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgcgg 117
                ||||||| ||| ||||||  |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 29774839 tggaggaggacacgccggtgacgaagacggtgaaggccgcggcgacggggctggccgcgg 29774898

                                                                            
Query: 118      gcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgccacg 177
                | ||||||||||||||  ||||||| || ||| |||||||||||||||| ||||||||||
Sbjct: 29774899 ggaccatctggggcacggtcgtcgcgacatggcacgacgtgccccgggtcgagcgccacg 29774958

                                                                            
Query: 178      tcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcactttcg 237
                ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 29774959 tcgcgctcccggggctcatccggacgctcaagatgtgcggcagctacggggccacgttcg 29775018

                                                                            
Query: 238      ccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaagc 297
                |||||||||| || || |||||||| || |||||| | |||| |||||||||||||||| 
Sbjct: 29775019 ccgccgtcgggggcctctacatcggcgtcgagcagctcgtgctgagccagcgcaagaaga 29775078

                                                               
Query: 298      gcgacttcgtcaacggggccatcggcgccttcgtctccggcgccacc 344
                 ||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 29775079 acgactacgtcaacggggccgtcggcgccttcgtcgccggcgccacc 29775125



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 79/94 (84%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                            
Query: 375      tctgccctcatcggtggttctagcctggcattcacatctgccatcctggacgttggtggt 434
                ||||| ||||| | ||||||| ||||||| || ||||||||    ||||||||||| || 
Sbjct: 29776679 tctgcgctcatagctggttcttgcctggcttttacatctgctgcgctggacgttggcggc 29776738

                                                  
Query: 435      aatactacccagagtggacaatggcaaagcgtac 468
                || |||||| ||||||||||||||||||| ||||
Sbjct: 29776739 aacactacc-agagtggacaatggcaaagagtac 29776771



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 2        ctccgcctccggctccgcctcggc 25
                ||||||||||| ||||||||||||
Sbjct: 10996323 ctccgcctccgcctccgcctcggc 10996346



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 2       ctccgcctccggctccgcctcggc 25
               ||||||||||| ||||||||||||
Sbjct: 9622746 ctccgcctccgcctccgcctcggc 9622723
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score =  323 bits (163), Expect = 3e-85
 Identities = 256/287 (89%)
 Strand = Plus / Plus

                                                                         
Query: 58    tggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgcgg 117
             ||||||| ||| ||||||  |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 31184 tggaggaggacacgccggtgacgaagacggtgaaggccgcggcgacggggctggccgcgg 31243

                                                                         
Query: 118   gcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgccacg 177
             | ||||||||||||||  ||||||| || ||| |||||||||||||||| ||||||||||
Sbjct: 31244 ggaccatctggggcacggtcgtcgcgacatggcacgacgtgccccgggtcgagcgccacg 31303

                                                                         
Query: 178   tcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcactttcg 237
             ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 31304 tcgcgctcccggggctcatccggacgctcaagatgtgcggcagctacggggccacgttcg 31363

                                                                         
Query: 238   ccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaagc 297
             |||||||||| || || |||||||| || |||||| | |||| |||||||||||||||| 
Sbjct: 31364 ccgccgtcgggggcctctacatcggcgtcgagcagctcgtgctgagccagcgcaagaaga 31423

                                                            
Query: 298   gcgacttcgtcaacggggccatcggcgccttcgtctccggcgccacc 344
              ||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 31424 acgactacgtcaacggggccgtcggcgccttcgtcgccggcgccacc 31470



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 79/94 (84%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                         
Query: 375   tctgccctcatcggtggttctagcctggcattcacatctgccatcctggacgttggtggt 434
             ||||| ||||| | ||||||| ||||||| || ||||||||    ||||||||||| || 
Sbjct: 33024 tctgcgctcatagctggttcttgcctggcttttacatctgctgcgctggacgttggcggc 33083

                                               
Query: 435   aatactacccagagtggacaatggcaaagcgtac 468
             || |||||| ||||||||||||||||||| ||||
Sbjct: 33084 aacactacc-agagtggacaatggcaaagagtac 33116
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score =  323 bits (163), Expect = 3e-85
 Identities = 256/287 (89%)
 Strand = Plus / Plus

                                                                          
Query: 58     tggaggatgactcgccggccacgaagacggtgaagggcgccgcgacgggtctggccgcgg 117
              ||||||| ||| ||||||  |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 143818 tggaggaggacacgccggtgacgaagacggtgaaggccgcggcgacggggctggccgcgg 143877

                                                                          
Query: 118    gcaccatctggggcaccatcgtcgccacctggtacgacgtgccccgggtggagcgccacg 177
              | ||||||||||||||  ||||||| || ||| |||||||||||||||| ||||||||||
Sbjct: 143878 ggaccatctggggcacggtcgtcgcgacatggcacgacgtgccccgggtcgagcgccacg 143937

                                                                          
Query: 178    tcgcgctcccgggcctcgtccggacgctcaagatgtgcggcagctacggggtcactttcg 237
              ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 143938 tcgcgctcccggggctcatccggacgctcaagatgtgcggcagctacggggccacgttcg 143997

                                                                          
Query: 238    ccgccgtcggaggactttacatcggggtggagcagattgtgcagagccagcgcaagaagc 297
              |||||||||| || || |||||||| || |||||| | |||| |||||||||||||||| 
Sbjct: 143998 ccgccgtcgggggcctctacatcggcgtcgagcagctcgtgctgagccagcgcaagaaga 144057

                                                             
Query: 298    gcgacttcgtcaacggggccatcggcgccttcgtctccggcgccacc 344
               ||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 144058 acgactacgtcaacggggccgtcggcgccttcgtcgccggcgccacc 144104



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 79/94 (84%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                          
Query: 375    tctgccctcatcggtggttctagcctggcattcacatctgccatcctggacgttggtggt 434
              ||||| ||||| | ||||||| ||||||| || ||||||||    ||||||||||| || 
Sbjct: 145658 tctgcgctcatagctggttcttgcctggcttttacatctgctgcgctggacgttggcggc 145717

                                                
Query: 435    aatactacccagagtggacaatggcaaagcgtac 468
              || |||||| ||||||||||||||||||| ||||
Sbjct: 145718 aacactacc-agagtggacaatggcaaagagtac 145750
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>emb|CR691112.2|CNS0FW7O Tetraodon nigroviridis full-length cDNA
          Length = 1273

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1    gctccgcctccggctccgcctc 22
            ||||||||||||||||||||||
Sbjct: 1234 gctccgcctccggctccgcctc 1213
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>gb|AC004926.2| Homo sapiens PAC clone RP5-910H9 from 7, complete sequence
          Length = 153556

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 431   tggtaatactacccagagtgg 451
             |||||||||||||||||||||
Sbjct: 67774 tggtaatactacccagagtgg 67754
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 328     tcgtctccggcgccaccgtct 348
               |||||||||||||||||||||
Sbjct: 3396133 tcgtctccggcgccaccgtct 3396153
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>ref|XM_476085.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  cgcgctcccgggcctcgtcc 198
            ||||||||||||||||||||
Sbjct: 1326 cgcgctcccgggcctcgtcc 1345
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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   cgcgctcccgggcctcgtcc 198
             ||||||||||||||||||||
Sbjct: 34368 cgcgctcccgggcctcgtcc 34387
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>ref|XM_465025.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2621

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   ctccgcctccggctccgcctcggc 25
           ||||||||||| ||||||||||||
Sbjct: 224 ctccgcctccgcctccgcctcggc 201
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>gb|BT019037.1| Zea mays clone Contig554.F mRNA sequence
          Length = 1184

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  ccgcctccggctccgcctcg 23
          ||||||||||||||||||||
Sbjct: 13 ccgcctccggctccgcctcg 32
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>gb|AY196994.1| Streptomyces griseoruber heda cluster, complete sequence
          Length = 45603

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   cttcgtctccggcgccaccg 345
             ||||||||||||||||||||
Sbjct: 16985 cttcgtctccggcgccaccg 16966
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>gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, complete sequence
          Length = 189787

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      ctccgcctccggctccgcctcggc 25
              ||||||||||| ||||||||||||
Sbjct: 177331 ctccgcctccgcctccgcctcggc 177308
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>gb|AC149067.3| Mus musculus BAC clone RP23-56C20 from chromosome 7, complete sequence
          Length = 267610

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ggagcagattgtgcagagcc 285
              ||||||||||||||||||||
Sbjct: 103956 ggagcagattgtgcagagcc 103975
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>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0035B18, complete sequence
          Length = 123425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     ctccgcctccggctccgcctcggc 25
             ||||||||||| ||||||||||||
Sbjct: 25585 ctccgcctccgcctccgcctcggc 25562
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>emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23 on chromosome 22q12.1-12.2,
             complete sequence
          Length = 114600

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   tctgccctcatcggtggttctagc 398
             ||||||||||| ||||||||||||
Sbjct: 82966 tctgccctcatgggtggttctagc 82943
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>emb|AJ938012.1| Aeromonas caviae transposon Tn903-interrupted sequence, partial
           fstC gene for putative colicin receptor
          Length = 331

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gcgccttcgtctccggcgcc 341
           ||||||||||||||||||||
Sbjct: 62  gcgccttcgtctccggcgcc 81
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>emb|BX927244.11| Zebrafish DNA sequence from clone CH211-116O3 in linkage group 15,
             complete sequence
          Length = 152919

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   cagagtggacaatggcaaag 463
             ||||||||||||||||||||
Sbjct: 91664 cagagtggacaatggcaaag 91683
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>emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in linkage group 10,
              complete sequence
          Length = 215862

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    catgcatacacaatggaaaa 488
              ||||||||||||||||||||
Sbjct: 162405 catgcatacacaatggaaaa 162424
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>gb|AC087269.5| Homo sapiens chromosome 8, clone RP11-211C9, complete sequence
          Length = 187924

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gcaggaagtaggaaagggag 54
              ||||||||||||||||||||
Sbjct: 117759 gcaggaagtaggaaagggag 117740
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 2       ctccgcctccggctccgcctcggc 25
               ||||||||||| ||||||||||||
Sbjct: 1406790 ctccgcctccgcctccgcctcggc 1406767
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     cgcgctcccgggcctcgtcc 198
               ||||||||||||||||||||
Sbjct: 5827604 cgcgctcccgggcctcgtcc 5827623
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 2       ctccgcctccggctccgcctcggc 25
               ||||||||||| ||||||||||||
Sbjct: 9764206 ctccgcctccgcctccgcctcggc 9764229
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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025D05
          Length = 145684

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     ctccgcctccggctccgcctcggc 25
             ||||||||||| ||||||||||||
Sbjct: 28456 ctccgcctccgcctccgcctcggc 28479
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>gb|AF363793.1| Caiman crocodilus apaporiensis L-lactate dehydrogenase B (LDH-B)
          mRNA, complete cds
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  ctccgcctccggctccgcctcggc 25
          ||||||||||| ||||||||||||
Sbjct: 21 ctccgcctccgcctccgcctcggc 44
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>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0693E08
          Length = 157969

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     ctccgcctccggctccgcctcggc 25
             ||||||||||| ||||||||||||
Sbjct: 86964 ctccgcctccgcctccgcctcggc 86941
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>dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1086_G08
          Length = 59883

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     ctccgcctccggctccgcctcggc 25
             ||||||||||| ||||||||||||
Sbjct: 22986 ctccgcctccgcctccgcctcggc 23009
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      ctccgcctccggctccgcctcggc 25
              ||||||||||| ||||||||||||
Sbjct: 202522 ctccgcctccgcctccgcctcggc 202545
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>dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M07, full
           insert sequence
          Length = 1309

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 2   ctccgcctccggctccgcctcggc 25
           ||||||||||| ||||||||||||
Sbjct: 161 ctccgcctccgcctccgcctcggc 184
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     cgccttcgtctccggcgcca 342
               ||||||||||||||||||||
Sbjct: 2363975 cgccttcgtctccggcgcca 2363956
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>dbj|AK066342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068I02, full
           insert sequence
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   ctccgcctccggctccgcctcggc 25
           ||||||||||| ||||||||||||
Sbjct: 191 ctccgcctccgcctccgcctcggc 168
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>dbj|AK065628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027K22, full
           insert sequence
          Length = 2621

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   ctccgcctccggctccgcctcggc 25
           ||||||||||| ||||||||||||
Sbjct: 224 ctccgcctccgcctccgcctcggc 201
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>emb|CR848009.9| Zebrafish DNA sequence from clone CH211-210O21 in linkage group 15,
             complete sequence
          Length = 157273

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   cagagtggacaatggcaaag 463
             ||||||||||||||||||||
Sbjct: 38694 cagagtggacaatggcaaag 38675
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
             sequence
          Length = 131195

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ccgcctccggctccgcctcg 23
             ||||||||||||||||||||
Sbjct: 61717 ccgcctccggctccgcctcg 61736
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>dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-334E6, complete
              sequences
          Length = 191362

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aggaaagggagcgatggagg 63
              ||||||||||||||||||||
Sbjct: 113160 aggaaagggagcgatggagg 113141
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>gb|AC110885.14| Mus musculus chromosome 7, clone RP24-342P18, complete sequence
          Length = 223826

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 352    gctacagaggaaagagcattaagt 375
              |||||||||||||||||| |||||
Sbjct: 135777 gctacagaggaaagagcagtaagt 135754
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 2       ctccgcctccggctccgcctcggc 25
               ||||||||||| ||||||||||||
Sbjct: 1404511 ctccgcctccgcctccgcctcggc 1404488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,250,622
Number of Sequences: 3902068
Number of extensions: 3250622
Number of successful extensions: 78036
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77540
Number of HSP's gapped (non-prelim): 494
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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