Clone Name | basd3f16 |
---|---|
Clone Library Name | barley_pub |
>gb|AC006126.1|AC006126 Homo sapiens chromosome 19, cosmid F18718, complete sequence Length = 46100 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Plus Query: 25 ctctcctccctccgaccctccctcttc 51 ||||||||||||| ||||||||||||| Sbjct: 9820 ctctcctccctcccaccctccctcttc 9846
>gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete sequence Length = 167771 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 ggaggcatggagccttcagagt 308 |||||||||||||||||||||| Sbjct: 103944 ggaggcatggagccttcagagt 103923
>ref|XM_389637.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09461.1) partial mRNA Length = 1731 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 acatggctgtagcggcggcgc 259 ||||||||||||||||||||| Sbjct: 1517 acatggctgtagcggcggcgc 1537
>gb|AC129492.6| Homo sapiens chromosome 17, clone RP11-599B13, complete sequence Length = 196037 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 cccctcctcctgccggtggcc 329 ||||||||||||||||||||| Sbjct: 67872 cccctcctcctgccggtggcc 67892
>gb|AC131702.3| Mus musculus BAC clone RP24-177J5 from chromosome 7, complete sequence Length = 154632 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 cctgggatctctcctccctcc 37 ||||||||||||||||||||| Sbjct: 38407 cctgggatctctcctccctcc 38427
>gb|AC091297.3| Sus scrofa clone RP44-52N13, complete sequence Length = 142057 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 24 tctctcctccctccgaccctccctc 48 |||||||||||||| |||||||||| Sbjct: 92833 tctctcctccctcccaccctccctc 92809
>emb|AL603764.27| Human DNA sequence from clone RP11-481L19 on chromosome 10 Contains the 3' end of the PRSS11 gene for protease serine 11 (IGF binding) and the DMBT1 gene for deleted in malignant brain tumors 1, complete sequence Length = 191741 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 ctctcctccctccgaccctccctct 49 |||||||||||||||||| |||||| Sbjct: 157377 ctctcctccctccgacccaccctct 157353
>gb|AC107913.7| Homo sapiens chromosome 17, clone CTD-3051C7, complete sequence Length = 128953 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 cccctcctcctgccggtggcc 329 ||||||||||||||||||||| Sbjct: 50223 cccctcctcctgccggtggcc 50203
>gb|AC104762.7| Homo sapiens chromosome 17, clone RP11-769H22, complete sequence Length = 162678 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 cccctcctcctgccggtggcc 329 ||||||||||||||||||||| Sbjct: 67872 cccctcctcctgccggtggcc 67892
>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179283 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 caatttcggggcaaatgataaaaag 215 |||||||||||| |||||||||||| Sbjct: 114215 caatttcggggcgaatgataaaaag 114191
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 gctgtagcggcggcgcagctc 264 ||||||||||||||||||||| Sbjct: 985101 gctgtagcggcggcgcagctc 985081
>gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, complete sequence Length = 164151 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 aaatgataaaaagtcctgtttcacc 227 ||||| ||||||||||||||||||| Sbjct: 56053 aaatgttaaaaagtcctgtttcacc 56077
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 caatttcggggcaaatgataaaaag 215 |||||||||||| |||||||||||| Sbjct: 157232 caatttcggggcgaatgataaaaag 157208
>emb|AJ305027.1|HSA305027 Homo sapiens partial ALOX12B gene for arachidonate 12R-lipoxygenase, exons 3 to 14 and partial ALOX15P pseudogene for arachidonate 15-lipoxygenase, exons 11 to 14 Length = 13652 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 cccctcctcctgccggtggcc 329 ||||||||||||||||||||| Sbjct: 10644 cccctcctcctgccggtggcc 10624
>gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, complete sequence Length = 189849 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ggagtgagtgggaagctgttt 396 ||||||||||||||||||||| Sbjct: 16985 ggagtgagtgggaagctgttt 16965
>gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, complete sequence Length = 213731 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cctccctccgaccctccctc 48 |||||||||||||||||||| Sbjct: 110527 cctccctccgaccctccctc 110546
>ref|XM_366649.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02725.4) partial mRNA Length = 1320 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 cccctcctcctgccggtggccacg 332 ||||||||||||||||||| |||| Sbjct: 1142 cccctcctcctgccggtgggcacg 1119
>gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome 1, complete sequence Length = 172848 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttttcagtttctaccagtgg 377 |||||||||||||||||||| Sbjct: 132788 ttttcagtttctaccagtgg 132769
>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence Length = 198564 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 caccaatttgggcaaatcat 179 |||||||||||||||||||| Sbjct: 4062 caccaatttgggcaaatcat 4081
>gb|AC027342.5| Homo sapiens chromosome 5 clone CTD-2294O13, complete sequence Length = 112904 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 caccaatttgggcaaatcat 179 |||||||||||||||||||| Sbjct: 74405 caccaatttgggcaaatcat 74424
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 ctctcctccctccgaccctccctc 48 ||||||||||||| |||||||||| Sbjct: 22181595 ctctcctccctcctaccctccctc 22181572
>gb|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC 6J18, genomic sequence Length = 111865 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 cccctcctcctgccggtggccacg 332 ||||||||||||||||||| |||| Sbjct: 71995 cccctcctcctgccggtgggcacg 71972
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 ctctcctccctccgaccctccctc 48 ||||||||||||| |||||||||| Sbjct: 98894 ctctcctccctcctaccctccctc 98871
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 gccaaggcgacagcgacggcaagg 141 ||||| |||||||||||||||||| Sbjct: 2590892 gccaaagcgacagcgacggcaagg 2590915
>gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, complete sequence Length = 215765 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttttcagtttctaccagtgg 377 |||||||||||||||||||| Sbjct: 201978 ttttcagtttctaccagtgg 201959
>gb|AC131699.4| Mus musculus BAC clone RP23-440F17 from 1, complete sequence Length = 200544 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttttcagtttctaccagtgg 377 |||||||||||||||||||| Sbjct: 52990 ttttcagtttctaccagtgg 52971
>gb|AC167197.6| Mus musculus chromosome 1, clone RP23-62B14, complete sequence Length = 220763 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttttcagtttctaccagtgg 377 |||||||||||||||||||| Sbjct: 35511 ttttcagtttctaccagtgg 35492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,132,561 Number of Sequences: 3902068 Number of extensions: 3132561 Number of successful extensions: 68070 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67932 Number of HSP's gapped (non-prelim): 138 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)